CV884209

Overview
NameCV884209
Unique NameCV884209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6947 contig Csv1_Contig6947:1109..1983. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV884209 vs. ExPASy Swiss-Prot
Match: ASPL1_ARATH (Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.375e-52
Identity = 104/206 (50.49%), Postives = 138/206 (66.99%), Query Frame = -1 
Query:  267 GSVFFGDQGPATQQSTSFLPI-GEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGI--IGQNFMMGHRMVFDRENLKLAWSHSKCEEVIDKSHVHLVPPPAGQSPNPLPTTEQQS 875
            G ++FGD GP+ QQST FL +   KY  Y VGVE+ CIGNSCL Q+ F   +DSG SFT+LP EIY +V ++ D+ +++   + +G SW+YCY +S+E   KVP ++L FS N +FV+   +F F +++G   FCL + S  G  GI  IGQN+M G+RMVFDREN+KL WS SKC+E  DK       P +  SPNPLPT EQQS
Sbjct:  281 GRIYFGDMGPSIQQSTPFLQLDNNKYSGYIVGVEACCIGNSCLKQTSFTTFIDSGQSFTYLPEEIYRKVALEIDRHINATSKNFEGVSWEYCYESSAEP--KVPAIKLKFSHNNTFVIHKPLFVFQQSQGLVQFCLPI-SPSGQEGIGSIGQNYMRGYRMVFDRENMKLGWSPSKCQE--DKIEPPQASPGSTSSPNPLPTDEQQS 481
The following BLAST results are available for this feature:
BLAST of CV884209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ASPL1_ARATH6.375e-5250.49Aspartic proteinase-like protein 1 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884209 ID=CV884209; Name=CV884209; organism=Citrus sinensis; type=EST; length=875bp
AGAAATCTTCCACCAACCCCAATCAATACAAATGGCCTAATAGAAAAACT
GAGCTGTTTTGTAAGATGGGAGAGGTTGACAAGAATAGACAACAGATTTA
CAAGTGCGGGTGAGGACTAATCGGATGATAGGAGCAAACACATTAACACA
AGCAATGAACATGCTACACGAAGAACAGAGTCAAGTTGCTGGGCTGAGGC
TGCAATGGACTTGGACGGAGCCGTTTTTGCAGTAGAAGGTGGTGCAGCTG
CCTGTCCATTACTGGTGCTCTGTTGCTCTGTCGTTGGCAATGGGTTTGGA
GATTGACCGGCAGGTGGTGGCACAAGGTGCACATGTGACTTGTCGATCAC
TTCTTCACATTTGGAATGTGACCAAGCCAATTTCAAATTTTCCCTATCAA
AGACCATGCGGTGACCCATCATGAAGTTTTGTCCAATGATACCATAGTCT
CCATCCGTAGACATCACAGTTAAACAGAATACAGTAAATCCCTCATTTTC
AGGAAATGAAAATATGTGATTACGGACTACAAAGCTTTGGTTTTTAGAAA
ATATAAGTCTCATATCAGGAACTTTAAGCATCTCCTCTGAACTGGCATTA
TAGCAGTACTTCCAGGAATTTCCTTGGAGGCTAATCCTTTTAGAACTCAC
AAGTTTGTCAAACTTCACAACAACTTCAGCATAAATTTCTGTTGGAAGAA
AAGTGAAAGATGCACCACTGTCAACTAGTGCTTGGAATCCAGATTGTGTA
AGACAAGAATTTCCAATACAGTAAGACTCCACCCCAACGAAATAGGCGTC
ATATTTTTCTCCAATAGGCAAGAATGAAGTCGATTGTTGGGTTGCAGGCC
CTTGGTCTCCAAAAAAAACACTGCC
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