CX673480

Overview
NameCX673480
Unique NameCX673480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX673480 vs. ExPASy Swiss-Prot
Match: UP12_ORYSJ (Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2)

HSP 1 Score: 367.466 bits (942), Expect = 5.254e-101
Identity = 180/228 (78.95%), Postives = 206/228 (90.35%), Query Frame = -2 
Query:  146 RASSATAVEDGSNGDTDTIPTPKVIIDXDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKADTGRKVDDPEVLEAIRLTVINNLLQYHPESSSQLAMGVAFGVDPPKQQVDVDIATHISVFDDGPDRSLLLVETADRPGLLVDLVKIITDINVNVESGEFDTEGLLAKAKFHVSYKGKAIIKPLQQVLANSLRYFLRRPTTEEASF 829
            RA+S+ AVEDGS+ +TDT+PTPKVIID DSDPDATIVEIT GDRLG LLDTMNALKNLGLNVVKA+V LDS+GKH K AITK  TGRK+ +PE+LEA+RLT+INN++QYHPE+SSQLA+G  FG +PP + VDVDIATHI ++DDGPDRSLL+VETADRPGLLVDLVKII DIN+ V+SGEFDTEGLLAKAKFHVSY+GK +IK LQQVLANSLRYFLRRPTTEE S+
Sbjct:   56 RAASSAAVEDGSSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDSTGKHIKLAITKLSTGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTELVDVDIATHIDIYDDGPDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTEGLLAKAKFHVSYRGKPLIKALQQVLANSLRYFLRRPTTEEGSY 283
[Close]
BLAST of CX673480 vs. ExPASy Swiss-Prot
Match: UP12_ORYSI (Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_027381 PE=1 SV=2)

HSP 1 Score: 367.466 bits (942), Expect = 5.254e-101
Identity = 180/228 (78.95%), Postives = 206/228 (90.35%), Query Frame = -2 
Query:  146 RASSATAVEDGSNGDTDTIPTPKVIIDXDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKADTGRKVDDPEVLEAIRLTVINNLLQYHPESSSQLAMGVAFGVDPPKQQVDVDIATHISVFDDGPDRSLLLVETADRPGLLVDLVKIITDINVNVESGEFDTEGLLAKAKFHVSYKGKAIIKPLQQVLANSLRYFLRRPTTEEASF 829
            RA+S+ AVEDGS+ +TDT+PTPKVIID DSDPDATIVEIT GDRLG LLDTMNALKNLGLNVVKA+V LDS+GKH K AITK  TGRK+ +PE+LEA+RLT+INN++QYHPE+SSQLA+G  FG +PP + VDVDIATHI ++DDGPDRSLL+VETADRPGLLVDLVKII DIN+ V+SGEFDTEGLLAKAKFHVSY+GK +IK LQQVLANSLRYFLRRPTTEE S+
Sbjct:   56 RAASSAAVEDGSSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDSTGKHIKLAITKLSTGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTELVDVDIATHIDIYDDGPDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTEGLLAKAKFHVSYRGKPLIKALQQVLANSLRYFLRRPTTEEGSY 283
The following BLAST results are available for this feature:
BLAST of CX673480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UP12_ORYSJ5.254e-10178.95Unknown protein DS12 from 2D-PAGE of leaf, chlorop... [more]
UP12_ORYSI5.254e-10178.95Unknown protein DS12 from 2D-PAGE of leaf, chlorop... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_22H08_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-22H08-P16-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX673480 ID=CX673480; Name=CX673480; organism=Citrus sinensis; type=EST; length=830bp
GTTTTATTTATTTTATGTAAGGAGATTAGGGAGACAACATATTGTAATTC
CCCTTGTGAATGTTTACTGGGTAGAGAAATAAAAAAAAATTCATCAAGTG
TGTGTAATCCTGAATTTGGTTGGTGGAGTCTTCAACAACAGCTCAAAAAC
TTGCCTCCTCGGTTGTTGGTCGCCTCAAGAAATATCGCAAACTGTTAGCA
AGAACCTGTTGGAGAGGCTTGATAATGGCTTTACCCTTGTAGCTGACATG
AAACTTTGCCTTAGCCAACAACCCCTCAGTATCAAACTCTCCCGATTCAA
CATTGACATTGATGTCAGTGATAATCTTTACAAGATCCACCAATAATCCA
GGTCGATCAGCCGTCTCCACCAAAAGCAAACTTCGGTCGGGCCCATCATC
AAAGACACTTATGTGGGTTGCTATGTCCACATCAACCTGTTGTTTTGGAG
GATCAACGCCAAAGGCAACACCCATTGCTAACTGGGAACTTGATTCCGGG
TGATACTGAAGTAGATTGTTTATAACTGTCAAACGAATTGCCTCAAGCAC
CTCAGGATCATCAACTTTCCTACCAGTATCAGCTTTGGTAATGGCAAACT
TGTTGTGCTTCCCAGAAGAATCCAAAAAAACATTTGCCTTGACAACATTC
AGCCCAAGGTTCTTAAGTGCGTTCATAGTATCAAGAAGAGCTCCAAGGCG
ATCGCCAAAGGTTATCTCCACTATGGTTGCATCCGGGTCAGAATCTANGT
CTATTATGACTTTGGGAGTCGGAATTGTATCAGTGTCACCATTACTTCCA
TCCTCCACAGCTGTAGCTGAGGAGGCTCGA
back to top