CX673436

Overview
NameCX673436
Unique NameCX673436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX673436 vs. ExPASy Swiss-Prot
Match: MEI2_SCHPO (Meiosis protein mei2 OS=Schizosaccharomyces pombe GN=mei2 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.957e-28
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 1
Query:    1 GTYDFIYLPIDFKNKCNVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRSRL 327
            GTYDF+YL IDF NKCNVGYAFIN I+P+ II F +A  G +W  F+SEK+  ++YA IQGK  LI  F+NS +M+E+   RP +F + GPN G  EPFP   N R +L
Sbjct:  623 GTYDFLYLRIDFVNKCNVGYAFINFIEPQSIITFGKARVGTQWNVFHSEKICDISYANIQGKDRLIEKFRNSCVMDENPAYRPKIFVSHGPNRGMEEPFPAPNNARRKL 731          
BLAST of CX673436 vs. ExPASy Swiss-Prot
Match: TE1_MAIZE (Protein terminal ear1 OS=Zea mays GN=TE1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.154e-19
Identity = 44/98 (44.90%), Postives = 59/98 (60.20%), Query Frame = 1
Query:    7 YDFIYLPIDFKNKCNVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFH--TDGPNAGDPEP 294
            YDF+YLPIDF NKCNVGY F+N+  P   +  ++AF+ + WE +NS K+  + YAR+QG  AL  HF+NS    +     P+ F    DG    DP P
Sbjct:  484 YDFVYLPIDFNNKCNVGYGFVNLTSPEARVRLYKAFHKQPWEVYNSRKICQVTYARVQGLEALKEHFKNSKFPCDSDEYLPVAFSPARDGKELTDPVP 581          
BLAST of CX673436 vs. ExPASy Swiss-Prot
Match: PLA2_ORYSJ (Protein terminal ear1 homolog OS=Oryza sativa subsp. japonica GN=PLA2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.507e-19
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 1
Query:    4 TYDFIYLPIDFKNKCNVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFH--TDGPNAGDPEP 294
            +YDF+YLPIDF NKCNVGY F+N+  P   +  ++AF+ + WE FNS K+  + YAR+QG  AL  HF+NS    +     P++F    DG    +P P
Sbjct:  502 SYDFLYLPIDFNNKCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYARVQGLDALKEHFKNSKFPCDSDEYLPVVFSPPRDGKLLTEPVP 600          
BLAST of CX673436 vs. ExPASy Swiss-Prot
Match: PLA2_ORYSI (Protein terminal ear1 homolog OS=Oryza sativa subsp. indica GN=PLA2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.507e-19
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 1
Query:    4 TYDFIYLPIDFKNKCNVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFH--TDGPNAGDPEP 294
            +YDF+YLPIDF NKCNVGY F+N+  P   +  ++AF+ + WE FNS K+  + YAR+QG  AL  HF+NS    +     P++F    DG    +P P
Sbjct:  499 SYDFLYLPIDFNNKCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYARVQGLDALKEHFKNSKFPCDSDEYLPVVFSPPRDGKLLTEPVP 597          
The following BLAST results are available for this feature:
BLAST of CX673436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MEI2_SCHPO3.957e-2855.05Meiosis protein mei2 OS=Schizosaccharomyces pombe ... [more]
TE1_MAIZE1.154e-1944.90Protein terminal ear1 OS=Zea mays GN=TE1 PE=2 SV=1[more]
PLA2_ORYSJ1.507e-1944.44Protein terminal ear1 homolog OS=Oryza sativa subs... [more]
PLA2_ORYSI1.507e-1944.44Protein terminal ear1 homolog OS=Oryza sativa subs... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_22F06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-22F06-K12-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX673436 ID=CX673436; Name=CX673436; organism=Citrus sinensis; type=EST; length=901bp
GGAACATATGATTTTATTTATTTGCCAATTGACTTCAAGAACAAATGTAA
TGTGGGCTATGCATTCATCAACATGATTGATCCCCGCCAGATTATTCCTT
TCCATCAGGCATTCAATGGAAAAAAGTGGGAAAAGTTCAACAGTGAGAAG
GTGGCATCTCTTGCATATGCTCGAATTCAGGGAAAAGCGGCTCTTATTGC
CCATTTTCAGAATTCAAGCTTGATGAATGAGGATAAACGTTGCCGTCCTA
TTCTCTTCCATACTGATGGCCCCAATGCTGGTGATCCGGAGCCGTTTCCC
ATGGGTACAAATATTCGATCAAGATTGGGCAAACCTCGAATCAATGGCAA
CGAGGAAAGCCAGCGCCAAGGATTCACTTCAGTATCTGGAAACGGAGAGG
AATCTCCCAATGGATCAGACTCCTCGGGTTCTTCAAAGGGTTCTGATTGA
GTAATCAGGTTTAACCAAGGTCCGAGGCACTAACCTTAAAACCCTGTATC
AGAGTACAAAAGCTAAACCCATCCCTATTCTGTATATCAGGGGTGGCCTG
ACAACATTTTTCAGCTATAGAGGGAGCAATTTTTGCATAGTTTTTGGAAA
TCAAAATTCAAAACCAAAATCCAGTGGGCTATTTGCTGATTTTCTTTGCT
GTTTCCTTCAACAGTTTTTGTATCATCGCCCACTAAGTATAGAGCATGGC
GTAATAGAGAGAGAGAGGTTAAAAGTTTTGGATAGTCGTGGCTAAACAGA
GTTATGATGTACAGAAGTTCCTGAGCTTTTTGAATGACTCTGGGGATCTT
CTCTGTTTTTGTTCTCAATTTTGTATCCCATTATCTTTATTGTAATTTCA
ATTTTCCCTTGAGATTTTGGAGGTGTTTGTGGACTCGGCTTCTGTTCTAT
G
back to top