CV719930

Overview
NameCV719930
Unique NameCV719930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_CITSI (ATP synthase subunit b, chloroplastic OS=Citrus sinensis GN=atpF PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.357e-64
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD
Sbjct:   60 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 184
[Close]
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_POPTR (ATP synthase subunit b, chloroplastic OS=Populus trichocarpa GN=atpF PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 7.198e-59
Identity = 115/125 (92.00%), Postives = 121/125 (96.80%), Query Frame = 1 
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAIE+LEKARARLRK+EIEADQFRVNGYSEIEREK NLINSTYKTL+QLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCL  ELHLRTISANIGMFGAMKEIT+
Sbjct:   60 ILNTIRNSEELRGGAIEQLEKARARLRKVEIEADQFRVNGYSEIEREKLNLINSTYKTLEQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLTNELHLRTISANIGMFGAMKEITN 184
[Close]
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_POPAL (ATP synthase subunit b, chloroplastic OS=Populus alba GN=atpF PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 7.198e-59
Identity = 115/125 (92.00%), Postives = 121/125 (96.80%), Query Frame = 1 
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAIE+LEKARARLRK+EIEADQFRVNGYSEIEREK NLINSTYKTL+QLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCL  ELHLRTISANIGMFGAMKEIT+
Sbjct:   60 ILNTIRNSEELRGGAIEQLEKARARLRKVEIEADQFRVNGYSEIEREKLNLINSTYKTLEQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLTNELHLRTISANIGMFGAMKEITN 184
[Close]
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_EUCGG (ATP synthase subunit b, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=atpF PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 7.198e-59
Identity = 114/125 (91.20%), Postives = 122/125 (97.60%), Query Frame = 1 
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAIE+LEKARARLRK+E+EA+QFRVNGYSEIE+EK NLINSTYKTL+QLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLN ELHLRTISANIGMFGAMKEITD
Sbjct:   60 ILNTIRNSEELRGGAIEQLEKARARLRKVEMEAEQFRVNGYSEIEQEKLNLINSTYKTLEQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNNELHLRTISANIGMFGAMKEITD 184
[Close]
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_BUXMI (ATP synthase subunit b, chloroplastic OS=Buxus microphylla GN=atpF PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.039e-57
Identity = 112/125 (89.60%), Postives = 121/125 (96.80%), Query Frame = 1 
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            IL++IRNSEEL+ GAIE+LEKARARLRK+E+EAD+FRVNGYSEIEREK NLINSTYK L++LENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLN ELHLRTISANIGMFGAMKEITD
Sbjct:   60 ILSTIRNSEELRVGAIEQLEKARARLRKVEMEADEFRVNGYSEIEREKLNLINSTYKNLERLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNNELHLRTISANIGMFGAMKEITD 184
[Close]
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_VITVI (ATP synthase subunit b, chloroplastic OS=Vitis vinifera GN=atpF PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.950e-57
Identity = 110/123 (89.43%), Postives = 119/123 (96.75%), Query Frame = 1 
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEI 705
            ILN+IRNSEEL+ GAIE+LEKARARLRK+E+EADQ+RVNGYSEIEREK NLINSTY TL+QLENYKNETIHFEQQRAINQVRQRV QQALQGALGT+NSCLNKELHLRTISANIGMFG+MKEI
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLRKVEMEADQYRVNGYSEIEREKLNLINSTYNTLEQLENYKNETIHFEQQRAINQVRQRVLQQALQGALGTINSCLNKELHLRTISANIGMFGSMKEI 182
[Close]
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_PANGI (ATP synthase subunit b, chloroplastic OS=Panax ginseng GN=atpF PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.737e-57
Identity = 111/125 (88.80%), Postives = 119/125 (95.20%), Query Frame = 1 
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAIE+LEKARARLRK+E+EADQFRVNGYSEIEREK+N INST KTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTL+ CLN ELHLRTISANIG+ GAMKEITD
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKWNFINSTSKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLSGCLNNELHLRTISANIGILGAMKEITD 184
[Close]
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_GOSHI (ATP synthase subunit b, chloroplastic OS=Gossypium hirsutum GN=atpF PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.737e-57
Identity = 112/125 (89.60%), Postives = 119/125 (95.20%), Query Frame = 1 
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAIERLEKARARLRK+E+EADQFRVNGYSEIEREK NLINSTYK L+QLENYKNETI+FEQQRAINQVRQRVFQQALQGALGTLNS LN ELHLRTISANIG+FG MKEITD
Sbjct:   60 ILNTIRNSEELRGGAIERLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTYKILEQLENYKNETIYFEQQRAINQVRQRVFQQALQGALGTLNSSLNNELHLRTISANIGLFGVMKEITD 184
[Close]
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_GOSBA (ATP synthase subunit b, chloroplastic OS=Gossypium barbadense GN=atpF PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.737e-57
Identity = 112/125 (89.60%), Postives = 119/125 (95.20%), Query Frame = 1 
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAIERLEKARARLRK+E+EADQFRVNGYSEIEREK NLINSTYK L+QLENYKNETI+FEQQRAINQVRQRVFQQALQGALGTLNS LN ELHLRTISANIG+FG MKEITD
Sbjct:   60 ILNTIRNSEELRGGAIERLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTYKILEQLENYKNETIYFEQQRAINQVRQRVFQQALQGALGTLNSSLNNELHLRTISANIGLFGVMKEITD 184
[Close]
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_LACSA (ATP synthase subunit b, chloroplastic OS=Lactuca sativa GN=atpF PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.799e-57
Identity = 111/125 (88.80%), Postives = 120/125 (96.00%), Query Frame = 1 
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAIE+LEKARARLRK+EIEADQFRVNGYSEIEREK NLI+STYKTL+QLENYKNETI+FEQQ+A NQVRQRVFQQALQGALGTLNSCLN ELHLRTISANIG+ GAMKEITD
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLRKVEIEADQFRVNGYSEIEREKLNLIDSTYKTLEQLENYKNETINFEQQKASNQVRQRVFQQALQGALGTLNSCLNSELHLRTISANIGILGAMKEITD 184
The following BLAST results are available for this feature:
BLAST of CV719930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
ATPF_CITSI4.357e-64100.00ATP synthase subunit b, chloroplastic OS=Citrus si... [more]
ATPF_POPTR7.198e-5992.00ATP synthase subunit b, chloroplastic OS=Populus t... [more]
ATPF_POPAL7.198e-5992.00ATP synthase subunit b, chloroplastic OS=Populus a... [more]
ATPF_EUCGG7.198e-5991.20ATP synthase subunit b, chloroplastic OS=Eucalyptu... [more]
ATPF_BUXMI1.039e-5789.60ATP synthase subunit b, chloroplastic OS=Buxus mic... [more]
ATPF_VITVI3.950e-5789.43ATP synthase subunit b, chloroplastic OS=Vitis vin... [more]
ATPF_PANGI6.737e-5788.80ATP synthase subunit b, chloroplastic OS=Panax gin... [more]
ATPF_GOSHI6.737e-5789.60ATP synthase subunit b, chloroplastic OS=Gossypium... [more]
ATPF_GOSBA6.737e-5789.60ATP synthase subunit b, chloroplastic OS=Gossypium... [more]
ATPF_LACSA8.799e-5788.80ATP synthase subunit b, chloroplastic OS=Lactuca s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0012K16_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0012K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV719930 ID=CV719930; Name=CV719930; organism=Citrus sinensis; type=EST; length=750bp
TTTGGATTTGAAGAAAAAAAGAAACAACTTTGCTGACAATTATATATTTT
GATTTGGTCAGAAGAGTCCTCCGAATATTCTGTTCTTGGATTAGGGATCA
GTCGCAAGATTCATTTTGGAATATGAATAGAGAAGAGAGGGAGAGGATAG
GCTCATTACATTAAAAAAAGATATGGGAACCCCCCCCATACATAAGTAGT
TGACGTAATTGAGTGGGAGAGCCAAATGAATCGAAAAATTCATGTTTGGT
TCGGGAAGGGATCATCGAAGTTTTGAGATGAATGGAAAGATAATCTACTT
TCATTAAGTGATTTATTAGATAATCGCAAACTGAGGATTTTGAATAGTAT
TCGAAATTCAGAAGAACTGCAGAGAGGGGCCATTGAACGGCTGGAAAAAG
CCCGGGCCCGGTTACGAAAAATAGAAATAGAAGCAGATCAGTTTCGAGTG
AATGGATACTCTGAGATAGAACGAGAAAAATTCAATTTGATTAATTCAAC
TTATAAGACTTTGGATCAATTAGAAAATTACAAAAATGAAACCATTCATT
TTGAACAACAAAGAGCAATTAATCAAGTCCGACAACGGGTTTTCCAACAA
GCTTTACAAGGAGCGCTCGGAACTCTGAATAGTTGTTTGAACAAGGAGTT
ACATTTACGTACCATTAGTGCCAATATTGGCATGTTTGGAGCGATGAAAG
AAATAACTGATTAGTCCTTTTACTGTAGGCACATTATTTTTTTTTTTTTT
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