EY665201

Overview
NameEY665201
Unique NameEY665201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1227
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665201 vs. ExPASy Swiss-Prot
Match: ACADM_PIG (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa GN=ACADM PE=1 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 8.532e-54
Identity = 104/141 (73.76%), Postives = 115/141 (81.56%), Query Frame = 1
Query:   40 RPRPPVACGATGLAQRCLDEATKYALERKAFGTQIANFQAIQFMLADMAVAVETARMAYQRAAWEFDQGRRNTYYASVAKCYAGDIANKCAADAVQIFGGAGFNTEYPVEKLMRECQIYQIYEGTXQIQRQIIA*NHIHRY 462
            + RPPVA GA GLAQR LDEATKYALERK FG  +A  Q I F+LADMA+ VE AR++YQRAAWE D GRRNTYYAS+AK YA DIAN+ A DAVQ+FGG GFNTEYPVEKLMR+ +IYQIYEGT QIQR IIA  HI RY
Sbjct:  279 KTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIGRY 419          
BLAST of EY665201 vs. ExPASy Swiss-Prot
Match: ACADM_BOVIN (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADM PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 5.530e-53
Identity = 103/141 (73.05%), Postives = 115/141 (81.56%), Query Frame = 1
Query:   40 RPRPPVACGATGLAQRCLDEATKYALERKAFGTQIANFQAIQFMLADMAVAVETARMAYQRAAWEFDQGRRNTYYASVAKCYAGDIANKCAADAVQIFGGAGFNTEYPVEKLMRECQIYQIYEGTXQIQRQIIA*NHIHRY 462
            + RPPVA  A GLAQR LDEATKYALERK FG  +   Q I F+LA+MA+ VE AR++YQRAAWE D GRRNTYYAS+AK YAGDIAN+ A+DAVQIFGG GFNTEYPVEKLMR+ +IYQIYEGT QIQR IIA  HI RY
Sbjct:  279 KTRPPVAAAAVGLAQRALDEATKYALERKTFGKLLIEHQGISFLLAEMAMKVELARLSYQRAAWEVDSGRRNTYYASIAKAYAGDIANQLASDAVQIFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIIAREHIGRY 419          
BLAST of EY665201 vs. ExPASy Swiss-Prot
Match: ACADM_DROME (Probable medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG12262 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 7.223e-53
Identity = 100/136 (73.53%), Postives = 117/136 (86.03%), Query Frame = 1
Query:   40 RPRPPVACGATGLAQRCLDEATKYALERKAFGTQIANFQAIQFMLADMAVAVETARMAYQRAAWEFDQGRRNTYYASVAKCYAGDIANKCAADAVQIFGGAGFNTEYPVEKLMRECQIYQIYEGTXQIQRQIIA*N 447
            + RPPVA GA GLAQRCLDEA KYALERK FG  IA  QA+QFMLADMA+ VET+R+A++ +AWE DQGRRN+YYAS+AKC+A D+ANK A+DAVQIFGG GFN+EYPVEKLMR+ +IYQIYEGT QIQR II+ N
Sbjct:  275 KTRPPVAAGAVGLAQRCLDEALKYALERKTFGVPIAYHQAVQFMLADMAIGVETSRLAWRLSAWEIDQGRRNSYYASIAKCHAADMANKIASDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISRN 410          
BLAST of EY665201 vs. ExPASy Swiss-Prot
Match: ACADM_MACFA (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADM PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.609e-52
Identity = 103/141 (73.05%), Postives = 115/141 (81.56%), Query Frame = 1
Query:   40 RPRPPVACGATGLAQRCLDEATKYALERKAFGTQIANFQAIQFMLADMAVAVETARMAYQRAAWEFDQGRRNTYYASVAKCYAGDIANKCAADAVQIFGGAGFNTEYPVEKLMRECQIYQIYEGTXQIQRQIIA*NHIHRY 462
            + RP V+ GA GLAQR LDEATKYALERK FG  +   QAI FMLA+MA+ VE ARM+YQRAAWE D GRRNTYYAS+AK +AGDIAN+ A DAVQIFGG GFNTEYPVEKLMR+ +IYQIYEGT QIQR IIA  HI +Y
Sbjct:  279 KTRPTVSSGAVGLAQRALDEATKYALERKTFGKLLIEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQIFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIIAREHIGKY 419          
BLAST of EY665201 vs. ExPASy Swiss-Prot
Match: ACADM_PANTR (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pan troglodytes GN=ACADM PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 2.745e-52
Identity = 102/141 (72.34%), Postives = 114/141 (80.85%), Query Frame = 1
Query:   40 RPRPPVACGATGLAQRCLDEATKYALERKAFGTQIANFQAIQFMLADMAVAVETARMAYQRAAWEFDQGRRNTYYASVAKCYAGDIANKCAADAVQIFGGAGFNTEYPVEKLMRECQIYQIYEGTXQIQRQIIA*NHIHRY 462
            + RP VA GA GLAQR LDEATKYALERK FG  +   QAI FMLA+MA+ VE ARM+YQRAAWE D GRRNTYYAS+AK +AGDIAN+ A DAVQI GG GFNTEYPVEKLMR+ +IYQIYEGT QIQR I+A  HI +Y
Sbjct:  279 KTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVAREHIDKY 419          
BLAST of EY665201 vs. ExPASy Swiss-Prot
Match: ACADM_HUMAN (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADM PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 2.745e-52
Identity = 102/141 (72.34%), Postives = 114/141 (80.85%), Query Frame = 1
Query:   40 RPRPPVACGATGLAQRCLDEATKYALERKAFGTQIANFQAIQFMLADMAVAVETARMAYQRAAWEFDQGRRNTYYASVAKCYAGDIANKCAADAVQIFGGAGFNTEYPVEKLMRECQIYQIYEGTXQIQRQIIA*NHIHRY 462
            + RP VA GA GLAQR LDEATKYALERK FG  +   QAI FMLA+MA+ VE ARM+YQRAAWE D GRRNTYYAS+AK +AGDIAN+ A DAVQI GG GFNTEYPVEKLMR+ +IYQIYEGT QIQR I+A  HI +Y
Sbjct:  279 KTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVAREHIDKY 419          
BLAST of EY665201 vs. ExPASy Swiss-Prot
Match: ACADM_MOUSE (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadm PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 4.682e-52
Identity = 100/141 (70.92%), Postives = 114/141 (80.85%), Query Frame = 1
Query:   40 RPRPPVACGATGLAQRCLDEATKYALERKAFGTQIANFQAIQFMLADMAVAVETARMAYQRAAWEFDQGRRNTYYASVAKCYAGDIANKCAADAVQIFGGAGFNTEYPVEKLMRECQIYQIYEGTXQIQRQIIA*NHIHRY 462
            R RP VA GA GLAQR LDEATKYAL+RK FG  +   Q + F+LA+MA+ VE AR++YQRAAWE D GRRNTYYAS+AK +AGDIAN+ A DAVQIFGG GFNTEYPVEKLMR+ +IYQIYEGT QIQR IIA  HI +Y
Sbjct:  279 RTRPTVAAGAVGLAQRALDEATKYALDRKTFGKLLVEHQGVSFLLAEMAMKVELARLSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQIFGGYGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIIAREHIEKY 419          
BLAST of EY665201 vs. ExPASy Swiss-Prot
Match: ACADM_RAT (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadm PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.362e-51
Identity = 99/141 (70.21%), Postives = 114/141 (80.85%), Query Frame = 1
Query:   40 RPRPPVACGATGLAQRCLDEATKYALERKAFGTQIANFQAIQFMLADMAVAVETARMAYQRAAWEFDQGRRNTYYASVAKCYAGDIANKCAADAVQIFGGAGFNTEYPVEKLMRECQIYQIYEGTXQIQRQIIA*NHIHRY 462
            R RP VA GA GLAQR LDEATKYAL+RK FG  +   Q + F+LA+MA+ VE AR++YQRAAWE D GRRNTY+AS+AK +AGDIAN+ A DAVQIFGG GFNTEYPVEKLMR+ +IYQIYEGT QIQR IIA  HI +Y
Sbjct:  279 RTRPTVAAGAVGLAQRALDEATKYALDRKTFGKLLVEHQGVSFLLAEMAMKVELARLSYQRAAWEVDSGRRNTYFASIAKAFAGDIANQLATDAVQIFGGYGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIIAREHIEKY 419          
BLAST of EY665201 vs. ExPASy Swiss-Prot
Match: ACADM_CAEEL (Probable medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=T08G2.3 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.156e-42
Identity = 88/142 (61.97%), Postives = 110/142 (77.46%), Query Frame = 1
Query:   46 RPPVACGATGLAQRCLDEATKYALERKAFGTQIANFQAIQFMLADMAVAVETARMAYQRAAWEFDQGRRNTYYASVAKCYAGDIANKCAADAVQIFGGAGFNTEYPVEKLMRECQIYQIYEGTXQIQRQIIA*NHIHRYMEN 471
            RP VA GA GL+ RCLDE+ KYALERKAFGT IAN QA+QFMLADMAV +E AR+   ++A + D   R++Y AS+AKC+A D AN+ A +AVQIFGG GFN+EYPVEKLMR+ +IYQIYEGT QIQR +I+   +  + +N
Sbjct:  271 RPGVAAGALGLSWRCLDESAKYALERKAFGTVIANHQAVQFMLADMAVNLELARLITYKSANDVDNKVRSSYNASIAKCFAADTANQAATNAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRIVISRMLLGHFAQN 412          
BLAST of EY665201 vs. ExPASy Swiss-Prot
Match: ACDP_MYCTU (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium tuberculosis GN=fadE25 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 5.037e-30
Identity = 66/133 (49.62%), Postives = 90/133 (67.67%), Query Frame = 1
Query:   46 RPPVACGATGLAQRCLDEATKYALERKAFGTQIANFQAIQFMLADMAVAVETARMAYQRAAWEFDQGRRNTYYASVA-KCYAGDIANKCAADAVQIFGGAGFNTEYPVEKLMRECQIYQIYEGTXQIQRQIIA 441
            RP +   A G+AQ  LD A  Y  +RK FG  I+ FQA+QFMLADMA+ VE AR+    AA   ++G  +  + S A KC+A D+A +   DAVQ+FGGAG+ T++PVE+ MR+ +I QIYEGT QIQR +++
Sbjct:  252 RPTIGAQAVGIAQGALDAAIAYTKDRKQFGESISTFQAVQFMLADMAMKVEAARLMVYSAAARAERGEPDLGFISAASKCFASDVAMEVTTDAVQLFGGAGYTTDFPVERFMRDAKITQIYEGTNQIQRVVMS 384          
The following BLAST results are available for this feature:
BLAST of EY665201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ACADM_PIG8.532e-5473.76Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADM_BOVIN5.530e-5373.05Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADM_DROME7.223e-5373.53Probable medium-chain specific acyl-CoA dehydrogen... [more]
ACADM_MACFA1.609e-5273.05Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADM_PANTR2.745e-5272.34Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADM_HUMAN2.745e-5272.34Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADM_MOUSE4.682e-5270.92Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADM_RAT1.362e-5170.21Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADM_CAEEL1.156e-4261.97Probable medium-chain specific acyl-CoA dehydrogen... [more]
ACDP_MYCTU5.037e-3049.62Probable acyl-CoA dehydrogenase fadE25 OS=Mycobact... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665201 ID=EY665201; Name=EY665201; organism=Citrus sinensis; type=EST; length=1227bp
GGCAGGGTCCGTGTTCGGGATTCACCGGGTCGACCCACGCGTCCGAGACC
ACCAGTAGCTTGTGGTGCAACTGGTTTAGCTCAACGTTGTTTAGATGAAG
CTACAAAATATGCTTTAGAACGTAAAGCTTTTGGTACTCAAATTGCAAAT
TTCCAAGCTATTCAATTTATGTTAGCAGATATGGCAGTTGCTGTAGAAAC
AGCTAGAATGGCTTATCAAAGAGCTGCATGGGAATTTGATCAAGGAAGAA
GAAATACTTATTATGCATCTGTTGCTAAATGTTATGCAGGAGATATTGCA
AATAAATGTGCTGCTGATGCTGTTCAAATATTCGGAGGAGCTGGTTTTAA
TACAGAGTATCCAGTTGAAAAATTAATGAGAGAATGCCAAATTTATCAAA
TTTATGAAGGTACANCACAAATTCAAAGACAAATCATTGCATAAAATCAT
ATTCATAGATACATGGAAAATCCAAAATAAGTGTATGAAACAAAATTTTA
TTTAAATTTTAAATTATTTTTATTTTATGAAAAAACATAAGGAAAATATT
CAAGTTGTTTGACGAATGTTAATTTACGGGAACTTTGGATTTTAATTTTA
AATATAAAGGAATATCCAAAGTTAATTTATAATTCATAAATTTTTTATGT
TTTTGTTCCAAAATATTTTATAATTATTTTAATTTTTTTTTTATATAAAA
AAAAACGAAGAAAAAAAAAGGGGGGGGCCGCCCTAAGAGATACAGGTTTA
CTTCCCGGGTGGGCGAATCCATTACTTTCTTTTTGGGGCACTATAATCCA
TTCAGGGGCGGCTTTATCACACCCCGGGGTGGGAAAACCCTGGGGTATAC
CAAATATTCCGCTTCGAACAAACCACCCTGTCCATGGTGGAAATAACGAA
AGCCCGCACTCTTCCTCTTCAATATGTGCCTCGCATGTGGTGAGAGACCC
CCATGAGCGCGATTAAGGCGGGTGTGGGGTGATAAACGGAAACTAAAAGA
TTCGGCTACAGAAACTTTAGATATATTCTTCTTTACAGACGTNGCGGTTA
TCTTGANGTAAGGGGGCTTCTTGGGAATATTTAATAATCGAATACATAAG
TTGATGGGGTGGACGAGAATACATTAATGGCTATATGGGAATTGAGAGTG
ACAGGACTGCCAGTAGCAAGTTTAATGCATGCTTCAGTANCAGGATGATA
AACACCAGCGGAAGCGCGTCGATGTGA
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