EH406477

Overview
NameEH406477
Unique NameEH406477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EH406477 vs. ExPASy Swiss-Prot
Match: RS103_ARATH (40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.491e-13
Identity = 31/35 (88.57%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 HYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 105
            HYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP
Sbjct:   63 HYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97
[Close]
BLAST of EH406477 vs. ExPASy Swiss-Prot
Match: RS101_ARATH (40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.491e-13
Identity = 31/35 (88.57%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 HYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 105
            HYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP
Sbjct:   63 HYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97
[Close]
BLAST of EH406477 vs. ExPASy Swiss-Prot
Match: RS102_ARATH (40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.495e-12
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 HYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 105
            HYYW+LTN+GI+FLRTYLNLPSEIVPATLKK  KP
Sbjct:   64 HYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKP 98
[Close]
BLAST of EH406477 vs. ExPASy Swiss-Prot
Match: RS10_ORYSJ (40S ribosomal protein S10 OS=Oryza sativa subsp. japonica GN=RPS10 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 7.177e-12
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 HYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 105
            +YYWYLTNDGIE LR YLNLPSEIVPATLKKSA+P
Sbjct:   63 YYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARP 97
The following BLAST results are available for this feature:
BLAST of EH406477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RS103_ARATH6.491e-1388.5740S ribosomal protein S10-3 OS=Arabidopsis thalian... [more]
RS101_ARATH6.491e-1388.5740S ribosomal protein S10-1 OS=Arabidopsis thalian... [more]
RS102_ARATH5.495e-1285.7140S ribosomal protein S10-2 OS=Arabidopsis thalian... [more]
RS10_ORYSJ7.177e-1288.5740S ribosomal protein S10 OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2BG07FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406477 ID=EH406477; Name=EH406477; organism=Citrus sinensis; type=EST; length=522bp
CACTATTATTGGTATCTTACGAATGATGGGATTGAGTTTTTGAGGACTTA
CCTCAATCTTCCATCAGAAATTGTTCCTGCTACCTTGAAGAAATCCGCTA
AGCCAGCTGGTCGCCCGATGGGTGGACCTGGTGGTGATCGTCCAAGGGGC
CCACCTCGTTTTGATGGAGACCGACCGAGGTTTGGTGACCGTGAAGGGTA
CCGTGGTGGTCCTCGTGGTGGTGACTTTGGTGGTGAGAAAGGTGGAGCCC
CTGCTGATTTCCAGCCATCCTTCAGGGGTTCTGGTGGAAGACCTGGTTTT
GGTCGCGGAGGTGGAGGCTATGGTGCAGCTCCATCAGGTTCAGGATTTCC
TTGAAGTTAAGGCCGGTTTGCTTAGTTCATGTTTGCCCCAAATTAGTGTT
TCAAGTCTTTAGAACAAGTCTAATGCCTTTGTTGAATTTTCTATAGTATT
TCTGTAAGCTTTAAAGTACAATATTAAGTTCATTATGAGATCTTCAGTTT
TTCCTCAGCATGGCTGTTGGTT
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