CV719658
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV719658 vs. ExPASy Swiss-Prot
Match: T2FB_BOVIN (General transcription factor IIF subunit 2 OS=Bos taurus GN=GTF2F2 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 3.082e-17 Identity = 51/155 (32.90%), Postives = 87/155 (56.13%), Query Frame = 2 Query: 239 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 703 ++VF ESS+ K+S+EG + + + RP ENY +L R + + R Q +D ++ +P+ + + KKK + KR R D+ + D++F FE+ + L+ L+ T QP +LKD+LK++ V N KG ++ ++ELKPEY+ Sbjct: 93 LTVFTESSSDKLSLEGIVVQRAECRPAAN--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKK-----EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVSYLKDILKEIGVQNVKGIHKNTWELKPEYR 240
BLAST of CV719658 vs. ExPASy Swiss-Prot
Match: T2FB_MOUSE (General transcription factor IIF subunit 2 OS=Mus musculus GN=Gtf2f2 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.967e-17 Identity = 50/155 (32.26%), Postives = 87/155 (56.13%), Query Frame = 2 Query: 239 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 703 ++VF ESS+ K+S+EG + + + RP ENY KL R + + R Q +D ++ +P+ + + KKK + KR R D+ + D++F FE+ + L+ L+ T QP +LK++LK++ + N KG ++ ++ELKPEY+ Sbjct: 93 LTVFTESSSDKLSLEGIVVQRAECRPAAS--ENYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKK-----EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWELKPEYR 240
BLAST of CV719658 vs. ExPASy Swiss-Prot
Match: T2FB_HUMAN (General transcription factor IIF subunit 2 OS=Homo sapiens GN=GTF2F2 PE=1 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.530e-16 Identity = 50/155 (32.26%), Postives = 87/155 (56.13%), Query Frame = 2 Query: 239 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 703 ++VF ESS+ K+S+EG + + + RP ENY +L R + + R Q +D ++ +P+ + + KKK + KR R D+ + D++F FE+ + L+ L+ T QP +LK++LK++ V N KG ++ ++ELKPEY+ Sbjct: 93 LTVFTESSSDKLSLEGIVVQRAECRPAAS--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKK-----EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYR 240
BLAST of CV719658 vs. ExPASy Swiss-Prot
Match: T2FB_RAT (General transcription factor IIF subunit 2 OS=Rattus norvegicus GN=Gtf2f2 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.998e-16 Identity = 50/155 (32.26%), Postives = 86/155 (55.48%), Query Frame = 2 Query: 239 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 703 ++VF ESS+ K+S+EG + + + RP ENY KL R + + R Q D ++ +P+ + + KKK + KR R D+ + D++F FE+ + L+ L+ T QP +LK++LK++ + N KG ++ ++ELKPEY+ Sbjct: 93 LTVFTESSSDKLSLEGIVVQRAECRPAAS--ENYMKLKRLQIEESSKPVRLSQQADKVVTTNYKPVANHQYNIEYERKKK-----EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWELKPEYR 240
BLAST of CV719658 vs. ExPASy Swiss-Prot
Match: T2FB_DROME (General transcription factor IIF subunit 2 OS=Drosophila melanogaster GN=TfIIFbeta PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 7.591e-16 Identity = 49/151 (32.45%), Postives = 84/151 (55.63%), Query Frame = 2 Query: 251 AESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 703 A+ N K+ +EG+I K + RP +N Y KL E K R++Q ID + +P+ + + E+KK +E K+ R D+ + D++F FE+ + ++ L++ T+QP +LK++LKD+C YN K ++ +ELK EY+ Sbjct: 115 AQPDNEKLYMEGRIVQKLECRPIADNC--YMKLKLESIRKASEPQRRVQPIDKIV-QNFKPVKDHAHNIEYRERKK-----AEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNPHKNMWELKKEYR 257
BLAST of CV719658 vs. ExPASy Swiss-Prot
Match: T2FB_XENLA (General transcription factor IIF subunit 2 OS=Xenopus laevis GN=gtf2f2 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.691e-15 Identity = 42/145 (28.97%), Postives = 86/145 (59.31%), Query Frame = 2 Query: 269 KISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 703 K+++EG + ++ + RP +NY ++ R++ + RQ Q ++ S+ +P+ + + +KKK + KR R D+ ++ D++F FE+ + ++ L+ T QP +LK++L+D+ +YN KG+++ ++ELKPEY+ Sbjct: 118 KLALEGIVVHRAECRPAAS--DNYMQMKRKQIEESSKPKRQSQQLEKAVTSNYKPVSNHQYNIEYEKKKK-----DDGKRARVDKHQVLDMLFSAFEKHQYYNIKDLVDITKQPVTYLKEILRDIGIYNMKGTHKNTWELKPEYR 255
BLAST of CV719658 vs. ExPASy Swiss-Prot
Match: T2FB_SCHPO (Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe GN=tfg2 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.691e-15 Identity = 58/190 (30.53%), Postives = 96/190 (50.53%), Query Frame = 2 Query: 176 STESGNAPKRYSMDMSKDLIPMS-VFAESSNGK----ISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMIS-----TGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYKKAAD 715 S E+ + PK Y++ + + S VF ES ++ G + ++ ++ P ++Y ++ ++R R++Q+ID+ GS + P G + S T F KP+ G +K +R R E+ DI+FK FE WTL+ L + QPE +LK++L + + N +G Y LKPEYK D Sbjct: 73 SPENADVPKIYNLRVMNKFVRNSYVFRESETSSSMKSTALVGTVAHECNVSPVIN--DDYRRVMQKRALAASAPKRKVQMIDDRGGSLLAP--GTLGSRSRSTTSFIRNVKPRT-GEGLKNSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAILNKRGPYALKYSLKPEYKGTMD 257
BLAST of CV719658 vs. ExPASy Swiss-Prot
Match: T2FB_DICDI (General transcription factor IIF subunit 2 OS=Dictyostelium discoideum GN=gtf2f2 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.767e-15 Identity = 51/159 (32.08%), Postives = 86/159 (54.09%), Query Frame = 2 Query: 236 PMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDN--GSHMRPMPGMMIST-GFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 703 P+ +F+E +G +++EG I + D++ E+ + Y L + R KY TK+R QVID + + +ST G T+KKK S K+ + E+ D++F F + + L+ L T+QP+ LK +L+ +C+ N +G YELKPE++ Sbjct: 86 PLKIFSEDKDGALALEGNIGLRCDIKIDVESPQ-YRDLMKSRHTKYNTKTRMTQVIDESELFTPTLFDANKVKVSTVGITQKKK-----STDKKEKLPEDEVLDLIFSAFRAEKHLDLKTLESFTEQPKNHLKTILEKVCILNKRGPYHHLYELKPEFR 238 The following BLAST results are available for this feature:
BLAST of CV719658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CV719658 ID=CV719658; Name=CV719658; organism=Citrus sinensis; type=EST; length=754bpback to top |