CV719658

Overview
NameCV719658
Unique NameCV719658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV719658 vs. ExPASy Swiss-Prot
Match: T2FB_BOVIN (General transcription factor IIF subunit 2 OS=Bos taurus GN=GTF2F2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.082e-17
Identity = 51/155 (32.90%), Postives = 87/155 (56.13%), Query Frame = 2
Query:  239 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 703
            ++VF ESS+ K+S+EG +  + + RP     ENY +L R +  +     R  Q +D    ++ +P+     +  +  KKK      + KR R D+  + D++F  FE+   + L+ L+  T QP  +LKD+LK++ V N KG ++ ++ELKPEY+
Sbjct:   93 LTVFTESSSDKLSLEGIVVQRAECRPAAN--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKK-----EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVSYLKDILKEIGVQNVKGIHKNTWELKPEYR 240          
BLAST of CV719658 vs. ExPASy Swiss-Prot
Match: T2FB_MOUSE (General transcription factor IIF subunit 2 OS=Mus musculus GN=Gtf2f2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.967e-17
Identity = 50/155 (32.26%), Postives = 87/155 (56.13%), Query Frame = 2
Query:  239 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 703
            ++VF ESS+ K+S+EG +  + + RP     ENY KL R +  +     R  Q +D    ++ +P+     +  +  KKK      + KR R D+  + D++F  FE+   + L+ L+  T QP  +LK++LK++ + N KG ++ ++ELKPEY+
Sbjct:   93 LTVFTESSSDKLSLEGIVVQRAECRPAAS--ENYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKK-----EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWELKPEYR 240          
BLAST of CV719658 vs. ExPASy Swiss-Prot
Match: T2FB_HUMAN (General transcription factor IIF subunit 2 OS=Homo sapiens GN=GTF2F2 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.530e-16
Identity = 50/155 (32.26%), Postives = 87/155 (56.13%), Query Frame = 2
Query:  239 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 703
            ++VF ESS+ K+S+EG +  + + RP     ENY +L R +  +     R  Q +D    ++ +P+     +  +  KKK      + KR R D+  + D++F  FE+   + L+ L+  T QP  +LK++LK++ V N KG ++ ++ELKPEY+
Sbjct:   93 LTVFTESSSDKLSLEGIVVQRAECRPAAS--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKK-----EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYR 240          
BLAST of CV719658 vs. ExPASy Swiss-Prot
Match: T2FB_RAT (General transcription factor IIF subunit 2 OS=Rattus norvegicus GN=Gtf2f2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.998e-16
Identity = 50/155 (32.26%), Postives = 86/155 (55.48%), Query Frame = 2
Query:  239 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 703
            ++VF ESS+ K+S+EG +  + + RP     ENY KL R +  +     R  Q  D    ++ +P+     +  +  KKK      + KR R D+  + D++F  FE+   + L+ L+  T QP  +LK++LK++ + N KG ++ ++ELKPEY+
Sbjct:   93 LTVFTESSSDKLSLEGIVVQRAECRPAAS--ENYMKLKRLQIEESSKPVRLSQQADKVVTTNYKPVANHQYNIEYERKKK-----EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWELKPEYR 240          
BLAST of CV719658 vs. ExPASy Swiss-Prot
Match: T2FB_DROME (General transcription factor IIF subunit 2 OS=Drosophila melanogaster GN=TfIIFbeta PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.591e-16
Identity = 49/151 (32.45%), Postives = 84/151 (55.63%), Query Frame = 2
Query:  251 AESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 703
            A+  N K+ +EG+I  K + RP  +N   Y KL  E   K     R++Q ID     + +P+     +  + E+KK     +E K+ R D+  + D++F  FE+   + ++ L++ T+QP  +LK++LKD+C YN K  ++  +ELK EY+
Sbjct:  115 AQPDNEKLYMEGRIVQKLECRPIADNC--YMKLKLESIRKASEPQRRVQPIDKIV-QNFKPVKDHAHNIEYRERKK-----AEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNPHKNMWELKKEYR 257          
BLAST of CV719658 vs. ExPASy Swiss-Prot
Match: T2FB_XENLA (General transcription factor IIF subunit 2 OS=Xenopus laevis GN=gtf2f2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.691e-15
Identity = 42/145 (28.97%), Postives = 86/145 (59.31%), Query Frame = 2
Query:  269 KISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 703
            K+++EG + ++ + RP     +NY ++ R++  +     RQ Q ++    S+ +P+     +  + +KKK      + KR R D+ ++ D++F  FE+   + ++ L+  T QP  +LK++L+D+ +YN KG+++ ++ELKPEY+
Sbjct:  118 KLALEGIVVHRAECRPAAS--DNYMQMKRKQIEESSKPKRQSQQLEKAVTSNYKPVSNHQYNIEYEKKKK-----DDGKRARVDKHQVLDMLFSAFEKHQYYNIKDLVDITKQPVTYLKEILRDIGIYNMKGTHKNTWELKPEYR 255          
BLAST of CV719658 vs. ExPASy Swiss-Prot
Match: T2FB_SCHPO (Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe GN=tfg2 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.691e-15
Identity = 58/190 (30.53%), Postives = 96/190 (50.53%), Query Frame = 2
Query:  176 STESGNAPKRYSMDMSKDLIPMS-VFAESSNGK----ISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMIS-----TGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYKKAAD 715
            S E+ + PK Y++ +    +  S VF ES         ++ G + ++ ++ P     ++Y ++ ++R        R++Q+ID+  GS + P  G + S     T F    KP+  G  +K +R  R E+ DI+FK FE    WTL+ L +   QPE +LK++L  + + N +G     Y LKPEYK   D
Sbjct:   73 SPENADVPKIYNLRVMNKFVRNSYVFRESETSSSMKSTALVGTVAHECNVSPVIN--DDYRRVMQKRALAASAPKRKVQMIDDRGGSLLAP--GTLGSRSRSTTSFIRNVKPRT-GEGLKNSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAILNKRGPYALKYSLKPEYKGTMD 257          
BLAST of CV719658 vs. ExPASy Swiss-Prot
Match: T2FB_DICDI (General transcription factor IIF subunit 2 OS=Dictyostelium discoideum GN=gtf2f2 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.767e-15
Identity = 51/159 (32.08%), Postives = 86/159 (54.09%), Query Frame = 2
Query:  236 PMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDN--GSHMRPMPGMMIST-GFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 703
            P+ +F+E  +G +++EG I  + D++   E+ + Y  L + R  KY TK+R  QVID        +     + +ST G T+KKK     S  K+ +    E+ D++F  F  + +  L+ L   T+QP+  LK +L+ +C+ N +G     YELKPE++
Sbjct:   86 PLKIFSEDKDGALALEGNIGLRCDIKIDVESPQ-YRDLMKSRHTKYNTKTRMTQVIDESELFTPTLFDANKVKVSTVGITQKKK-----STDKKEKLPEDEVLDLIFSAFRAEKHLDLKTLESFTEQPKNHLKTILEKVCILNKRGPYHHLYELKPEFR 238          
The following BLAST results are available for this feature:
BLAST of CV719658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
T2FB_BOVIN3.082e-1732.90General transcription factor IIF subunit 2 OS=Bos ... [more]
T2FB_MOUSE8.967e-1732.26General transcription factor IIF subunit 2 OS=Mus ... [more]
T2FB_HUMAN1.530e-1632.26General transcription factor IIF subunit 2 OS=Homo... [more]
T2FB_RAT1.998e-1632.26General transcription factor IIF subunit 2 OS=Ratt... [more]
T2FB_DROME7.591e-1632.45General transcription factor IIF subunit 2 OS=Dros... [more]
T2FB_XENLA1.691e-1528.97General transcription factor IIF subunit 2 OS=Xeno... [more]
T2FB_SCHPO1.691e-1530.53Transcription initiation factor IIF subunit beta O... [more]
T2FB_DICDI3.767e-1532.08General transcription factor IIF subunit 2 OS=Dict... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0012E10_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0012E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV719658 ID=CV719658; Name=CV719658; organism=Citrus sinensis; type=EST; length=754bp
GAAGTGCCCTGCATTAGTCTCTCGCTCCCTTAAGATTCCTTCTTCTGACA
ATGATGATGATGATTCCACTCGCCCTGTCGCCAAAGTCATCCTCTCCATC
GACCCTCTTCAATCCAATGAAGATTCTTCATCGTCATCGTCATCGTCATC
TACTCGGTTCACTATGGAATTGATCAGCACTGAATCTGGAAATGCTCCCA
AGCGTTACTCCATGGATATGTCTAAAGACTTGATTCCAATGTCCGTGTTT
GCAGAGTCATCAAATGGAAAGATATCTGTCGAAGGAAAAATAAAGAACAA
ATTTGACATGAGGCCTCATCATGAGAACATGGAGAACTATGGAAAACTCT
GCCGTGAACGGACAAACAAGTATATGACCAAAAGTAGACAGATACAGGTC
ATCGACAATGACAATGGATCTCATATGAGGCCTATGCCGGGGATGATGAT
TTCTACTGGATTTACTGAAAAGAAGAAACCGCAACCAAAGGGATCAGAAG
TGAAAAGAACAAGAAGGGATCGTGGAGAGATGGAAGACATCATGTTTAAG
CTCTTCGAAAGGCAATCAAATTGGACTTTAAGACAACTTATCCAAGAGAC
TGATCAACCTGAACAATTTCTGAAAGATATGCTTAAGGACCTCTGTGTCT
ACAATAACAAGGGAAGTAATCAAGGATCTTATGAGTTGAAGCCGGAATAC
AAGAAAGCAGCCGATGGTCCAGCTTCCTAATATGTCCTTAATCAAATGTA
TATT
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