EH406459

Overview
NameEH406459
Unique NameEH406459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length376
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406459 vs. ExPASy Swiss-Prot
Match: NDUA2_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo pygmaeus GN=NDUFA2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.011e-16
Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   16 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLVR 258
            ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+ +ALE++++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVLK 96          
BLAST of EH406459 vs. ExPASy Swiss-Prot
Match: NDUA2_PONAB (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo abelii GN=NDUFA2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.011e-16
Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   16 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLVR 258
            ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+ +ALE++++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVLK 96          
BLAST of EH406459 vs. ExPASy Swiss-Prot
Match: NDUA2_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Bos taurus GN=NDUFA2 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 6.011e-16
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   16 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLV 255
            ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+ +ALE+++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVSLNNFSADQVTRALENVL 95          
BLAST of EH406459 vs. ExPASy Swiss-Prot
Match: NDUA2_MACFA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Macaca fascicularis GN=NDUFA2 PE=3 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.025e-15
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   16 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLV 255
            ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+ +ALE+++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVL 95          
BLAST of EH406459 vs. ExPASy Swiss-Prot
Match: NDUA2_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Homo sapiens GN=NDUFA2 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 5.089e-15
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   16 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLV 255
            ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G E  + L+  +  Q+ +ALE+++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENVL 95          
BLAST of EH406459 vs. ExPASy Swiss-Prot
Match: NDUA2_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Gorilla gorilla gorilla GN=NDUFA2 PE=3 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.308e-14
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 1
Query:   16 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLV 255
            ++E+RI LCQ          F+E+ Y ELK  N  LPILIRECS ++P+LWARY  G E  + L+  +  Q+ +ALE+++
Sbjct:   16 LREIRIHLCQRSPGSRGVRDFIEKRYVELKKANSDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENVL 95          
BLAST of EH406459 vs. ExPASy Swiss-Prot
Match: NDUA2_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Mus musculus GN=Ndufa2 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.253e-13
Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   16 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLV 255
            ++E+R+ LCQ          F+ + Y ELK  +P LPILIRECS ++P+LWARY  G EK + L+ L+  ++ +A+++++
Sbjct:   16 LREIRVHLCQRSPGSQGVRDFIVQRYVELKKAHPNLPILIRECSEVQPKLWARYAFGQEKTVSLNNLSADEVTRAMQNVL 95          
BLAST of EH406459 vs. ExPASy Swiss-Prot
Match: NDUA2_NEUCR (NADH-ubiquinone oxidoreductase 10.5 kDa subunit OS=Neurospora crassa GN=nuo-10.5 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.878e-12
Identity = 33/84 (39.29%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    7 SRSMKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLVR 258
            ++ +KE+R L CQ          F+ RNY  +K  NP  PILIR+ SG  P+++AR++ G EK   L+GL++ QI + +  LV+
Sbjct:    8 NKGLKEVRFLFCQTGEHSAATRSFLLRNYPAMKKDNPATPILIRDASGTLPKVYARFEFGKEKSQSLEGLSDQQIEETVSSLVK 91          
The following BLAST results are available for this feature:
BLAST of EH406459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NDUA2_PONPY6.011e-1645.68NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_PONAB6.011e-1645.68NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_BOVIN6.011e-1646.25NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_MACFA1.025e-1546.25NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_HUMAN5.089e-1545.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_GORGO4.308e-1443.75NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_MOUSE1.253e-1340.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_NEUCR6.878e-1239.29NADH-ubiquinone oxidoreductase 10.5 kDa subunit OS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2AF08FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406459 ID=EH406459; Name=EH406459; organism=Citrus sinensis; type=EST; length=376bp
CAATTATCTCGGAGTATGAAGGAACTGAGGATCTTACTCTGCCAGACTTC
TCCTTCAAGCTCCTCCACTAGATCATTTGTAGAGAGGAACTACAAGGAGT
TGAAGACTTTAAACCCCAAACTTCCTATCTTGATTCGTGAGTGCAGTGGG
ATTGAGCCCCAGTTATGGGCTAGATATGATATGGGTGTTGAGAAGGGCAT
TGGTTTGGATGGTCTGAATGAGGCACAGATCGCAAAGGCACTCGAAGACC
TTGTCAGAGCTGGGGAAGCCCTTAAGCGTTGATATTGCTACTCTTTGATC
CATATGAGATGAAATAAATGTGTTAGAAAAATCTTCCTATGACAGTTTGC
TCTTTTATTTAGCAATCATTTTGATG
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