CX043449

Overview
NameCX043449
Unique NameCX043449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4045 contig Csv1_Contig4045:313..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX043449 vs. ExPASy Swiss-Prot
Match: HS105_PONAB (Heat shock protein 105 kDa OS=Pongo abelii GN=HSPH1 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.106e-38
Identity = 97/258 (37.60%), Postives = 140/258 (54.26%), Query Frame = 3 
Query:    6 ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGTFTVDVQYADVSELRAP-AKISTYTIGPFQSTK-SERAKVKVKVRLNMHGIVSIESAXXXXXXXXXXXXXXXXXXXAAKMETDEVPSDTAPPSSSETDVNMQDAXGTA--------DAQGTTDAP 749
            +L++++ PL   L +T L VEDV  VE+VG ++R+PA+ + + +FFGK+   T+NA E VARGCALQCAILSP FKVREF V ++ PF ISL W        +++ D +    VF + +  P  K LTF R G F ++  Y+D   +  P AKI  + +    + K  E+++VKVKVR+N HGI +I +A                       E D    +  PP + +TD N+Q     A        DAQ T+ +P
Sbjct:  313 LLQKIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFFGKDISTTLNADEAVARGCALQCAILSPAFKVREFSVTDAVPFPISLIW-------NHDSEDTEGVHEVFSRNHAAPFSKVLTFLRRGPFELEAFYSDPQGVPYPEAKIGRFVVQNVSAQKDGEKSRVKVKVRVNTHGIFTISTA--------SMVEKVPTEENEMSSEADMECLNQRPPENPDTDKNVQQDNSEAGTQPQVQTDAQQTSQSP 555
[Close]
BLAST of CX043449 vs. ExPASy Swiss-Prot
Match: HS105_HUMAN (Heat shock protein 105 kDa OS=Homo sapiens GN=HSPH1 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.106e-38
Identity = 97/258 (37.60%), Postives = 140/258 (54.26%), Query Frame = 3 
Query:    6 ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGTFTVDVQYADVSELRAP-AKISTYTIGPFQSTK-SERAKVKVKVRLNMHGIVSIESAXXXXXXXXXXXXXXXXXXXAAKMETDEVPSDTAPPSSSETDVNMQDAXGTA--------DAQGTTDAP 749
            +L++++ PL   L +T L VEDV  VE+VG ++R+PA+ + + +FFGK+   T+NA E VARGCALQCAILSP FKVREF V ++ PF ISL W        +++ D +    VF + +  P  K LTF R G F ++  Y+D   +  P AKI  + +    + K  E+++VKVKVR+N HGI +I +A                       E D    +  PP + +TD N+Q     A        DAQ T+ +P
Sbjct:  313 LLQKIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFFGKDISTTLNADEAVARGCALQCAILSPAFKVREFSVTDAVPFPISLIW-------NHDSEDTEGVHEVFSRNHAAPFSKVLTFLRRGPFELEAFYSDPQGVPYPEAKIGRFVVQNVSAQKDGEKSRVKVKVRVNTHGIFTISTA--------SMVEKVPTEENEMSSEADMECLNQRPPENPDTDKNVQQDNSEAGTQPQVQTDAQQTSQSP 555
[Close]
BLAST of CX043449 vs. ExPASy Swiss-Prot
Match: HS105_MOUSE (Heat shock protein 105 kDa OS=Mus musculus GN=Hsph1 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 7.004e-38
Identity = 92/251 (36.65%), Postives = 134/251 (53.39%), Query Frame = 3 
Query:    6 ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGTFTVDVQYADVSELRAP-AKISTYTIGPFQSTK-SERAKVKVKVRLNMHGIVSIESAXXXXXXXXXXXXXXXXXXXAAKMETDEVPSDTAPPSSSETDVNMQDAXGTADAQGTTDAPG 752
            +L++++ PL   +A+T L  EDV  +E+VG ++R+PA+ + + +FFGK+   T+NA E VARGCALQCAILSP FKVREF V ++ PF ISL W   + E +           VF + +  P  K LTF R G F ++  Y+D   +  P AKI  + +    + K  E+++VKVKVR+N HGI +I +A                    + +E D    +  P  SS+ D N+Q     A  Q      G
Sbjct:  313 LLQKIEVPLHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILSPAFKVREFSVTDAVPFPISLVWNHDSEETEG-------VHEVFSRNHAAPFSKVLTFLRRGPFELEAFYSDPQGVPYPEAKIGRFVVQNVSAQKDGEKSRVKVKVRVNTHGIFTISTA-------SMVEKVPTEEEDGSSLEADMECPNQRPTESSDVDKNIQQDNSEAGTQPQVQTDG 549
[Close]
BLAST of CX043449 vs. ExPASy Swiss-Prot
Match: HSP74_RAT (Heat shock 70 kDa protein 4 OS=Rattus norvegicus GN=Hspa4 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.148e-38
Identity = 84/192 (43.75%), Postives = 117/192 (60.94%), Query Frame = 3 
Query:    6 ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGTFTVDVQYADVSELRAP----AKISTYTIGPFQSTKSERAKVKVKVRLNMHGIVSIESA 569
            +L RV+ PL   L ++ L  ED++ VE+VG ++R+PA+ + +++FFGKE   T+NA E V RGCALQCAILSP FKVREF + +  P+ ISL W   A E  ++         VFPK +  P  K LTFYR   FT++  Y+   +L  P    A+ S   + P   +    +KVKVKVR+N+HGI S+ SA
Sbjct:  313 LLARVEPPLRSILDQSKLKKEDIYAVEIVGGATRIPAVKEKISKFFGKELSTTLNADEAVTRGCALQCAILSPAFKVREFSITDVVPYPISLRWNSPAEEGSSD-------CEVFPKNHAAPFSKVLTFYRKEPFTLEAYYSSPQDLPYPDPAIAQFSVQKVTP--QSDGSSSKVKVKVRVNVHGIFSVSSA 495
[Close]
BLAST of CX043449 vs. ExPASy Swiss-Prot
Match: HSP74_MOUSE (Heat shock 70 kDa protein 4 OS=Mus musculus GN=Hspa4 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.148e-38
Identity = 84/192 (43.75%), Postives = 117/192 (60.94%), Query Frame = 3 
Query:    6 ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGTFTVDVQYADVSELRAP----AKISTYTIGPFQSTKSERAKVKVKVRLNMHGIVSIESA 569
            +L RV+ PL   L ++ L  ED++ VE+VG ++R+PA+ + +++FFGKE   T+NA E V RGCALQCAILSP FKVREF + +  P+ ISL W   A E  ++         VFPK +  P  K LTFYR   FT++  Y+   +L  P    A+ S   + P   +    +KVKVKVR+N+HGI S+ SA
Sbjct:  313 LLARVEPPLRSVLEQSKLKKEDIYAVEIVGGATRIPAVKEKISKFFGKELSTTLNADEAVTRGCALQCAILSPAFKVREFSITDVVPYPISLRWNSPAEEGLSD-------CEVFPKNHAAPFSKVLTFYRKEPFTLEAYYSSPQDLPYPDPAIAQFSVQKVTP--QSDGSSSKVKVKVRVNVHGIFSVSSA 495
[Close]
BLAST of CX043449 vs. ExPASy Swiss-Prot
Match: HSP74_PONAB (Heat shock 70 kDa protein 4 OS=Pongo abelii GN=HSPA4 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.560e-37
Identity = 84/192 (43.75%), Postives = 116/192 (60.42%), Query Frame = 3 
Query:    6 ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGTFTVDVQYADVSELRAP----AKISTYTIGPFQSTKSERAKVKVKVRLNMHGIVSIESA 569
            +L RV+ PL   L +T L  ED++ VE+VG ++R+PA+ + +++FFGKE   T+NA E V RGCALQCAILSP FKVREF + +  P+ ISL W   A E  ++         VF K +  P  K LTFYR   FT++  Y+   +L  P    A+ S   + P   +    +KVKVKVR+N+HGI S+ SA
Sbjct:  313 LLARVEPPLRSVLEQTKLKKEDIYAVEIVGGATRIPAVKEKISKFFGKELSTTLNADEAVTRGCALQCAILSPAFKVREFSITDVVPYPISLRWNSPAEEGSSD-------CEVFSKNHAAPFSKVLTFYRKEPFTLEAYYSSPQDLPYPDPAIAQFSVQKVTP--QSDGSSSKVKVKVRVNVHGIFSVSSA 495
[Close]
BLAST of CX043449 vs. ExPASy Swiss-Prot
Match: HSP74_HUMAN (Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4)

HSP 1 Score: 156.377 bits (394), Expect = 1.560e-37
Identity = 84/192 (43.75%), Postives = 116/192 (60.42%), Query Frame = 3 
Query:    6 ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGTFTVDVQYADVSELRAP----AKISTYTIGPFQSTKSERAKVKVKVRLNMHGIVSIESA 569
            +L RV+ PL   L +T L  ED++ VE+VG ++R+PA+ + +++FFGKE   T+NA E V RGCALQCAILSP FKVREF + +  P+ ISL W   A E  ++         VF K +  P  K LTFYR   FT++  Y+   +L  P    A+ S   + P   +    +KVKVKVR+N+HGI S+ SA
Sbjct:  313 LLARVEPPLRSVLEQTKLKKEDIYAVEIVGGATRIPAVKEKISKFFGKELSTTLNADEAVTRGCALQCAILSPAFKVREFSITDVVPYPISLRWNSPAEEGSSD-------CEVFSKNHAAPFSKVLTFYRKEPFTLEAYYSSPQDLPYPDPAIAQFSVQKVTP--QSDGSSSKVKVKVRVNVHGIFSVSSA 495
[Close]
BLAST of CX043449 vs. ExPASy Swiss-Prot
Match: HS105_BOVIN (Heat shock protein 105 kDa OS=Bos taurus GN=HSPH1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.560e-37
Identity = 92/251 (36.65%), Postives = 137/251 (54.58%), Query Frame = 3 
Query:    6 ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGTFTVDVQYADVSELRAP-AKISTYTIGPFQSTK-SERAKVKVKVRLNMHGIVSIESAXXXXXXXXXXXXXXXXXXXAAKMETDEVPSDTAPPSSSETDVNMQDAXGTADAQGTTDAPG 752
            +L++++ PL   + +T L VEDV  VE+VG ++R+PA+ + + +FFGK+   T+NA E VARGCALQCAILSP FKVREF V ++ PF ISL W        +++ D +    VF + +  P  K LTF RSG F ++  Y+D   +  P AKI  + +    + K  E+++VKVKVR+N HGI +I +A                    + +E D    +  PP + + + N+Q     A  Q      G
Sbjct:  313 LLQKIEVPLYLLMEQTQLKVEDVSAVEIVGGTTRIPAVKEKIAKFFGKDVSTTLNADEAVARGCALQCAILSPAFKVREFSVTDAVPFPISLVW-------SHDSEDAEGVHEVFSRNHAAPFSKVLTFLRSGPFELEAFYSDPQGVPYPEAKIGRFIVQNVSAQKDGEKSRVKVKVRVNTHGIFTISTA-------SMVEKIPAEENEVSSLEADMDCQNQRPPENPDAEKNIQQDNNEAGTQPQVQTDG 549
[Close]
BLAST of CX043449 vs. ExPASy Swiss-Prot
Match: HS105_CRIGR (Heat shock protein 105 kDa OS=Cricetulus griseus GN=HSPH1 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.662e-37
Identity = 92/251 (36.65%), Postives = 132/251 (52.59%), Query Frame = 3 
Query:    6 ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGTFTVDVQYADVSELRAP-AKISTYTIGPFQSTK-SERAKVKVKVRLNMHGIVSIESAXXXXXXXXXXXXXXXXXXXAAKMETDEVPSDTAPPSSSETDVNMQDAXGTADAQGTTDAPG 752
            +L++++ PL   + +T L  EDV  +E+VG ++R+PA+ + + +FFGK+   T+NA E VARGCALQCAILSP FKVREF V ++ PF ISL W   + E +           VF + +  P  K LTF R G F ++  Y+D   +  P AKI  + +    + K  E++KVKVKVR+N HGI +I +A                    + +E D    +  P  SS+ D N Q     A  Q      G
Sbjct:  313 LLQKIEVPLHSLMEQTHLKTEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILSPAFKVREFSVTDAVPFPISLVWNHDSEETEG-------VHEVFSRNHAAPFSKVLTFLRRGPFELEAFYSDPQGVPYPEAKIGRFVVQNVSAQKDGEKSKVKVKVRVNTHGIFTISTA-------SMVEKVPTEEDDGSSVEADMECPNQKPAESSDVDKNSQQDNSEAGTQPQVQTDG 549
[Close]
BLAST of CX043449 vs. ExPASy Swiss-Prot
Match: HS74L_HUMAN (Heat shock 70 kDa protein 4L OS=Homo sapiens GN=HSPA4L PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 7.744e-37
Identity = 81/190 (42.63%), Postives = 121/190 (63.68%), Query Frame = 3 
Query:    6 ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGTFTVDVQYADVSELRAP-AKISTYTI-GPFQSTKSERAKVKVKVRLNMHGIVSIESA 569
            +L RV+ PL+  + +  L  ED+  +E+VG ++R+PA+ + +T+FF K+   T+NA E VARGCALQCAILSP FKVREF + +  P+SI+L WK S  +   E         VF K +P P  K +TF++   F ++  Y ++ E+  P A+I ++TI   F  +  + +KVKVKVR+N+HGI S+ SA
Sbjct:  313 LLARVEPPLKAVMEQANLQREDISSIEIVGGATRIPAVKEQITKFFLKDISTTLNADEAVARGCALQCAILSPAFKVREFSITDLVPYSITLRWKTSFEDGSGE-------CEVFCKNHPAPFSKVITFHKKEPFELEAFYTNLHEVPYPDARIGSFTIQNVFPQSDGDSSKVKVKVRVNIHGIFSVASA 495
The following BLAST results are available for this feature:
BLAST of CX043449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 261
Match NameE-valueIdentityDescription
HS105_PONAB4.106e-3837.60Heat shock protein 105 kDa OS=Pongo abelii GN=HSPH... [more]
HS105_HUMAN4.106e-3837.60Heat shock protein 105 kDa OS=Homo sapiens GN=HSPH... [more]
HS105_MOUSE7.004e-3836.65Heat shock protein 105 kDa OS=Mus musculus GN=Hsph... [more]
HSP74_RAT9.148e-3843.75Heat shock 70 kDa protein 4 OS=Rattus norvegicus G... [more]
HSP74_MOUSE9.148e-3843.75Heat shock 70 kDa protein 4 OS=Mus musculus GN=Hsp... [more]
HSP74_PONAB1.560e-3743.75Heat shock 70 kDa protein 4 OS=Pongo abelii GN=HSP... [more]
HSP74_HUMAN1.560e-3743.75Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSP... [more]
HS105_BOVIN1.560e-3736.65Heat shock protein 105 kDa OS=Bos taurus GN=HSPH1 ... [more]
HS105_CRIGR2.662e-3736.65Heat shock protein 105 kDa OS=Cricetulus griseus G... [more]
HS74L_HUMAN7.744e-3742.63Heat shock 70 kDa protein 4L OS=Homo sapiens GN=HS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_11B05_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11B05-C9-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043449 ID=CX043449; Name=CX043449; organism=Citrus sinensis; type=EST; length=753bp
CTCCAATCCTGGAACGTGTAAAGAGGCCTTTGGAAAAGGCTCTTGCTGAA
ACCGGGCTTTCAGTTGAGGATGTTCACATGGTTGAGGTTGTTGGCTCTTC
ATCTCGGGTTCCTGCAATAATTAAGATACTCACTGAATTCTTTGGAAAAG
AACCCAGGCGTACAATGAATGCAAGTGAGTGTGTAGCCAGAGGATGCGCT
TTACAATGTGCGATTCTTAGTCCTACTTTCAAAGTGCGGGAGTTTCAGGT
CAATGAGAGTTTCCCATTTTCAATTTCTTTGTCATGGAAAGGCTCTGCTC
CAGAAGCTCAAAATGAAACAGGGGACAATCAGCAAAGCACTACTGTGTTC
CCCAAGGGAAATCCAATACCTAGTGTGAAGGCTCTGACATTTTACAGGTC
AGGTACATTCACTGTTGATGTGCAGTATGCTGATGTGAGTGAATTGCGGG
CACCTGCCAAAATCAGTACTTACACGATCGGTCCTTTCCAATCTACAAAA
AGTGAACGGGCCAAAGTGAAAGTCAAAGTTCGCTTGAATATGCATGGGAT
TGTGTCTATTGAGTCAGCAACACTCTTGGAGGAAGAGGAAGTTGAAGTTC
CAGTTACGAAGGAGCCTGAAAAAGAAGCCGCTAAGATGGAAACTGATGAG
GTTCCCAGTGATACTGCTCCCCCTAGTTCCAGTGAGACTGATGTAAACAT
GCAAGATGCTAANGGTACTGCTGATGCTCAGGGAACCACTGATGCTCCGG
GGG
back to top