EY665095

Overview
NameEY665095
Unique NameEY665095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY665095 vs. ExPASy Swiss-Prot
Match: PSMD2_RAT (26S proteasome non-ATPase regulatory subunit 2 OS=Rattus norvegicus GN=Psmd2 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.124e-37
Identity = 77/133 (57.89%), Postives = 99/133 (74.44%), Query Frame = 3 
Query:   12 GLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDDNLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDY 410
            G LTL PYHSDR L+S  A+AG++T L + LD++ +I+GK HYVLY LV AMQPRML+T D+ L+PL                  PKTITGFQTH+TPVLLA G+RAELATE+++P++PILEGFVIL++N +Y
Sbjct:  774 GTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGFVILRKNPNY 906
[Close]
BLAST of EY665095 vs. ExPASy Swiss-Prot
Match: PSMD2_PONAB (26S proteasome non-ATPase regulatory subunit 2 OS=Pongo abelii GN=PSMD2 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.124e-37
Identity = 77/133 (57.89%), Postives = 99/133 (74.44%), Query Frame = 3 
Query:   12 GLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDDNLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDY 410
            G LTL PYHSDR L+S  A+AG++T L + LD++ +I+GK HYVLY LV AMQPRML+T D+ L+PL                  PKTITGFQTH+TPVLLA G+RAELATE+++P++PILEGFVIL++N +Y
Sbjct:  774 GTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGFVILRKNPNY 906
[Close]
BLAST of EY665095 vs. ExPASy Swiss-Prot
Match: PSMD2_MOUSE (26S proteasome non-ATPase regulatory subunit 2 OS=Mus musculus GN=Psmd2 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.124e-37
Identity = 77/133 (57.89%), Postives = 99/133 (74.44%), Query Frame = 3 
Query:   12 GLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDDNLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDY 410
            G LTL PYHSDR L+S  A+AG++T L + LD++ +I+GK HYVLY LV AMQPRML+T D+ L+PL                  PKTITGFQTH+TPVLLA G+RAELATE+++P++PILEGFVIL++N +Y
Sbjct:  774 GTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGFVILRKNPNY 906
[Close]
BLAST of EY665095 vs. ExPASy Swiss-Prot
Match: PSMD2_HUMAN (26S proteasome non-ATPase regulatory subunit 2 OS=Homo sapiens GN=PSMD2 PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 6.124e-37
Identity = 77/133 (57.89%), Postives = 99/133 (74.44%), Query Frame = 3 
Query:   12 GLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDDNLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDY 410
            G LTL PYHSDR L+S  A+AG++T L + LD++ +I+GK HYVLY LV AMQPRML+T D+ L+PL                  PKTITGFQTH+TPVLLA G+RAELATE+++P++PILEGFVIL++N +Y
Sbjct:  774 GTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGFVILRKNPNY 906
[Close]
BLAST of EY665095 vs. ExPASy Swiss-Prot
Match: PSMD2_BOVIN (26S proteasome non-ATPase regulatory subunit 2 OS=Bos taurus GN=PSMD2 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 6.124e-37
Identity = 77/133 (57.89%), Postives = 99/133 (74.44%), Query Frame = 3 
Query:   12 GLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDDNLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDY 410
            G LTL PYHSDR L+S  A+AG++T L + LD++ +I+GK HYVLY LV AMQPRML+T D+ L+PL                  PKTITGFQTH+TPVLLA G+RAELATE+++P++PILEGFVIL++N +Y
Sbjct:  774 GTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGFVILRKNPNY 906
[Close]
BLAST of EY665095 vs. ExPASy Swiss-Prot
Match: PSMD2_DICDI (26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium discoideum GN=psmD2 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.944e-31
Identity = 67/130 (51.54%), Postives = 89/130 (68.46%), Query Frame = 3 
Query:   12 GLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDDNLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKEN 401
            G +T+NPYHSDR L+SP A+ G++  L A LD+K ++  + HY+ + +V +M PRML+T+D++LKPL                  PKTITGFQTH+TPVLL   +RAELAT+ YIPL+ ILEG VILK N
Sbjct:  750 GTMTINPYHSDRTLMSPVAVGGLLALLHAGLDIKNILSTQSHYLFFSIVCSMYPRMLMTLDEDLKPLPVSVRVGQSVDIVGLAGKPKTITGFQTHTTPVLLGYNERAELATDDYIPLTNILEGIVILKPN 879
[Close]
BLAST of EY665095 vs. ExPASy Swiss-Prot
Match: RPN1_NEUCR (26S proteasome regulatory subunit rpn-1 OS=Neurospora crassa GN=rpn-1 PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.598e-29
Identity = 65/133 (48.87%), Postives = 89/133 (66.92%), Query Frame = 3 
Query:   12 GLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDDNLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDY 410
            G L+++P+H+DR +LS  A AG++  L A +D K  I  K HY+LY++V AM PRML+T+D++LKPL+                 PKTITG+QT STPVLL  G+RAEL  ++YI LS  LEG VIL++N D+
Sbjct:  766 GTLSVSPFHTDRQVLSNVATAGLLAVLVAMIDAKQFITSKSHYLLYWIVTAMHPRMLVTLDEDLKPLTVNVRVGQAVDVVGQAGRPKTITGWQTQSTPVLLGYGERAELEDDQYISLSSTLEGLVILRKNPDW 898
[Close]
BLAST of EY665095 vs. ExPASy Swiss-Prot
Match: RPN1_SCHPO (26S proteasome regulatory subunit rpn1 OS=Schizosaccharomyces pombe GN=rpn1 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.014e-23
Identity = 58/132 (43.94%), Postives = 84/132 (63.64%), Query Frame = 3 
Query:   12 GLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDDNLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSD 407
            G +TLNPYH++R +L  TA AG++T + A LD    ++   H++LY + LA++PRML+T+ ++ + L                  PK ITG+ TH+TPVLL   +RAELATE Y PL+  LEG VILK+N++
Sbjct:  755 GTMTLNPYHTERQILGQTAFAGLMTVVLAMLDANTFVLDTSHWLLYAITLAIRPRMLITLGEDGQYLPVSVRVGQAVDVVGQAGRPKVITGWVTHTTPVLLHHNERAELATEAYTPLTS-LEGIVILKKNTE 885
[Close]
BLAST of EY665095 vs. ExPASy Swiss-Prot
Match: RPN1_YEAST (26S proteasome regulatory subunit RPN1 OS=Saccharomyces cerevisiae GN=RPN1 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 5.959e-16
Identity = 48/136 (35.29%), Postives = 77/136 (56.62%), Query Frame = 3 
Query:   12 GLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDDNLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDYRED 419
            G +T++ ++ D  +L+   LA I+TT    +    ++  K+H + Y L   ++P+ +L ++D  +P+                  PK ITG+ T STPVLL  G+RAEL T++YI  +  +EG VILK+N DYRE+
Sbjct:  860 GTMTMDVFN-DAHVLNKVTLASILTTAVGLVSPSFML--KHHQLFYMLNAGIRPKFILALNDEGEPIKVNVRVGQAVETVGQAGRPKKITGWITQSTPVLLNHGERAELETDEYISYTSHIEGVVILKKNPDYREE 992
[Close]
BLAST of EY665095 vs. ExPASy Swiss-Prot
Match: RPN1_CANGA (26S proteasome regulatory subunit RPN1 OS=Candida glabrata GN=RPN1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.623e-13
Identity = 42/136 (30.88%), Postives = 77/136 (56.62%), Query Frame = 3 
Query:   12 GLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDDNLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDYRED 419
            G +T++ ++ D  +L+   LA ++T L   +    ++  K+H + Y L   ++P+ ++T+++  + +                  PKTITG+ T STPVLL  G+RAEL  ++YI  +  +EG VILK+N +++E+
Sbjct:  850 GTMTMDIFN-DAHVLNKVTLASLLTVLVGLISPSFIL--KHHQLFYMLNSGVRPKFIITLNEEGEQIKVNVRIGQAVETVGQAGKPKTITGWITQSTPVLLGHGERAELENDEYISYTNNIEGVVILKKNPNFQEE 982
The following BLAST results are available for this feature:
BLAST of EY665095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PSMD2_RAT6.124e-3757.8926S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_PONAB6.124e-3757.8926S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_MOUSE6.124e-3757.8926S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_HUMAN6.124e-3757.8926S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_BOVIN6.124e-3757.8926S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_DICDI2.944e-3151.5426S proteasome non-ATPase regulatory subunit 2 OS=... [more]
RPN1_NEUCR3.598e-2948.8726S proteasome regulatory subunit rpn-1 OS=Neurosp... [more]
RPN1_SCHPO1.014e-2343.9426S proteasome regulatory subunit rpn1 OS=Schizosa... [more]
RPN1_YEAST5.959e-1635.2926S proteasome regulatory subunit RPN1 OS=Saccharo... [more]
RPN1_CANGA1.623e-1330.8826S proteasome regulatory subunit RPN1 OS=Candida ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-A01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665095 ID=EY665095; Name=EY665095; organism=Citrus sinensis; type=EST; length=907bp
CCACGCGTCCGGGTCTCTTGACCCTTAACCCATACCATTCTGATCGCTTC
TTGCTATCACCGACTGCTCTTGCTGGTATAGTTACCACTCTTTTTGCATG
TCTAGACATGAAGGCAGTCATCGTGGGGAAATATCATTATGTTCTATACT
TCCTTGTCTTGGCAATGCAGCCAAGAATGTTACTGACTGTAGATGATAAT
CTCAAACCCCTGTCTGTTCCTGTTCGGGTGGGTCAGGCAGTTGATGTTGT
TGGCCAGGCAGGTCGGCCCAAGACCATCACTGGTTTCCAGACACACTCAA
CCCCAGTTCTTCTGGCTGCTGGTGATAGAGCAGAGTTGGCTACTGAGAAA
TATATCCCTCTTTCGCCGATTCTTGAAGGCTTTGTCATCTTGAAAGAGAA
CTCAGACTATAGAGAGGATCACTAGTTTTGTCACCCCAGGGCAAAGGGAG
TTCATTTATTGAAGTGTGTGTCATCATCATACCAGCTNTATTATGGGTTT
CAAGTTTAATGAGAGCAGCTTATGACCCATAACAAATATTTAGTTTGTCT
GCGAAGCTGGCATGTTGAGATCAACTTAGCCGATCACGGGTAATTGAGAA
TGATTAAAGGCCACTTCTGGACTATACGAAGAGAGCAAATTTGCCAAGAC
TATTGTTCTACATGCCTTCTTGAGTTGTTTTTTGGGTATGCACTTGGAAA
TATTCATCTAATTTTCATGTGTNNAATAGATATGCTCAACTTATTCCTCT
TTGGGTTTATAGAAAGTAGGGAGATCATCAGATACATTGAGTGGTCTTGT
AGCTTCCCCATCTTAAAGCCATGCTGACGAGATTTTCACTNACCGTTGCC
ACCCCTATTCACTGCATTGTGNATAATTTCCTTGGGAAATGTCATGTTCC
GCCTGGG
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