EY665079

Overview
NameEY665079
Unique NameEY665079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length347
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5190 contig Csv1_Contig5190:352..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665079 vs. ExPASy Swiss-Prot
Match: ACA1_ARATH (Calcium-transporting ATPase 1, chloroplastic OS=Arabidopsis thaliana GN=ACA1 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 6.447e-15
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 2
Query:    8 VGFQIIIIELLGTFANTTPLNLQQWFVSILLGFLGMPIAAVLKLIQVG 151
            V FQ+IIIELLGTFA+TTPLNL QW VSI+LGFLGMP+AA LK+I VG
Sbjct:  971 VVFQVIIIELLGTFADTTPLNLGQWLVSIILGFLGMPVAAALKMIPVG 1018          
BLAST of EY665079 vs. ExPASy Swiss-Prot
Match: ACA2_ORYSJ (Calcium-transporting ATPase 2, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os03g0616400 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.995e-12
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 2
Query:    2 GRVGFQIIIIELLGTFANTTPLNLQQWFVSILLGFLGMPIAAVLKLIQV 148
            G + FQ I+++ LG FANTTPL  QQW +SIL GFLGMPIAA +KLI V
Sbjct:  973 GTIFFQFILVQFLGDFANTTPLTQQQWLISILFGFLGMPIAAAIKLIAV 1021          
BLAST of EY665079 vs. ExPASy Swiss-Prot
Match: ACA7_ARATH (Putative calcium-transporting ATPase 7, plasma membrane-type OS=Arabidopsis thaliana GN=ACA7 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.713e-12
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 2
Query:    8 VGFQIIIIELLGTFANTTPLNLQQWFVSILLGFLGMPIAAVLKLIQV 148
            V FQIIIIE LGTFA+TTPL + QWF SI +GFLGMPIAA LK I V
Sbjct:  969 VFFQIIIIEFLGTFASTTPLTIVQWFFSIFVGFLGMPIAAGLKKIPV 1015          
BLAST of EY665079 vs. ExPASy Swiss-Prot
Match: ACA2_ARATH (Calcium-transporting ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=ACA2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.941e-11
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 2
Query:    8 VGFQIIIIELLGTFANTTPLNLQQWFVSILLGFLGMPIAAVLKLIQV 148
            V FQIIIIE LGTFA+TTPL + QW  SI +GFLGMPIAA LK I V
Sbjct:  968 VFFQIIIIEFLGTFASTTPLTITQWIFSIFIGFLGMPIAAGLKTIPV 1014          
The following BLAST results are available for this feature:
BLAST of EY665079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ACA1_ARATH6.447e-1579.17Calcium-transporting ATPase 1, chloroplastic OS=Ar... [more]
ACA2_ORYSJ2.995e-1265.31Calcium-transporting ATPase 2, plasma membrane-typ... [more]
ACA7_ARATH8.713e-1274.47Putative calcium-transporting ATPase 7, plasma mem... [more]
ACA2_ARATH1.941e-1172.34Calcium-transporting ATPase 2, plasma membrane-typ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-G06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665079 ID=EY665079; Name=EY665079; organism=Citrus sinensis; type=EST; length=347bp
CGGACGCGTGGGTTTTCAAATAATAATCATCGAGCTCCTGGGTACATTTG
CAAATACAACTCCTCTCAATTTGCAACAGTGGTTTGTTAGCATTTTACTT
GGATTCCTGGGCATGCCAATAGCAGCCGTTTTGAAGTTGATCCAAGTTGG
ATAAGACAGTAAATTCAAACCGTCCAAATTCTTATTTTTGAATTTTTATT
TTTTCGATTTTTCATCACCCTGGTAGTAGTAGCATTTGGCCTGACAGAAC
TTCCCACGTAGAGTTTGAACTGTGGGCAAATTTGAGGCTCAAGATGGATC
CAATTAGTAAAATTGATGCCATTAATTTTGAGAAAAAAAAAAAAAAA
back to top