EY665077

Overview
NameEY665077
Unique NameEY665077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665077_ssr528 microsatellite EY665077_ssr528:528..539. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY665077 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.457e-11
Identity = 44/95 (46.32%), Postives = 50/95 (52.63%), Query Frame = 3 
Query:  102 MATEDPVVDTETLPQPESAEPV------VEDKPSSKAGXXXXXXXXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEK 368
            MATE+P+V  ET+P+P   EP       V +K   KA                            YEEMIKDAIV+LKEK GSSQYAIAKFIEEK
Sbjct:    1 MATEEPIVAVETVPEPIVTEPTTITEPEVPEKEEPKA-EVEKTKKAKGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEK 94
The following BLAST results are available for this feature:
BLAST of EY665077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
H1_PEA7.457e-1146.32Histone H1 OS=Pisum sativum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-G03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665077 ID=EY665077; Name=EY665077; organism=Citrus sinensis; type=EST; length=900bp
AATTACTATTTCTCCACCACCCGCATTTTTAGATCCAATCTTTCGTTATC
TTTCTTGCTCGCTCTCCACTTCCTAATTTCTGAAACCCAATTCGATTCAA
AATGGCCACTGAAGATCCCGTTGTGGACACGGAGACCCTTCCTCAACCGG
AATCCGCTGAACCGGTGGTAGAGGACAAACCGTCCTCCAAAGCCGGCAAA
GGCAAGACCTCTAAGGAGCCCAAAGCCAAGAAAGCCGCTGCTCCGAGGAA
GCCTATAAGCCCTCCCTCTCATCCTCCGTATGAAGAGATGATTAAGGATG
CAATTGTTACTTTGAAAGAGAAGACCGGTTCGAGTCAGTATGCAATTGCC
AAATTTATTGAGGAGAAGCACAAGCAGTTGCCACCCAACTTTAAGAAGCT
GTTGCTGTTTCATTTGAAGAAGCTTGTGGGTTCCGGAAAGCTCGTGAAGG
TTAAGGGTTCCTTCAAGCTTCCATCGGCTAGGGCTGCCGTTTCTAAGCCG
GCTGCATCTGTTCCTGCTTCTCCGGCTAAGAAGAAGAAGCCGGTTGCTGC
TGGTAATGCCAAAACTAATGCGGCGCCCTCCAAGGCCAAAGCTCCACCTA
ATGCTAATGCTAAGGCACCAGCTAAAGCTCCGGCCAATGCTAAGCCAGCT
GCTAAACCCAAATGCCAGCCGGCTGCCAAGACTAATGCGGTGGCTGCCAA
GACTAAAGCGGCTTCGGCTAATGCTAAGCCTGCTGNCAAACCGAAAGCTG
CATCACCCATGACGATGTGACCGGCCAGCCGAAGCCAAAGGATAATCCCG
CAATGTTGCGAAGGACTCNACAGGACAATCTCAGGGAAAGAGCGCTGCTC
CAAACCGGGTTCAAAGAAGCTTCGGCTGCCAGAAAGCNTCGGCTAAAAGC
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