CV718954

Overview
NameCV718954
Unique NameCV718954
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV718954 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.297e-96
Identity = 178/197 (90.36%), Postives = 191/197 (96.95%), Query Frame = 3
Query:  198 DPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 788
            DP+Q   +VKLFNRW+F+DVQ++D+SL DYIGV  +K+ATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLLTDQNPIQVIVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARE+AFRNIK+IAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct:    3 DPTQ--IEVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 197          
BLAST of CV718954 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 351.673 bits (901), Expect = 2.890e-96
Identity = 178/207 (85.99%), Postives = 192/207 (92.75%), Query Frame = 3
Query:  168 MATAVVTQSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 788
            MATA    ++       +VKLFNRWT++DV V DISL DYIGVQAAK+AT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct:    1 MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207          
BLAST of CV718954 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 2.447e-95
Identity = 176/207 (85.02%), Postives = 191/207 (92.27%), Query Frame = 3
Query:  168 MATAVVTQSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 788
            MA +    ++   Q   +VKLFNRW+F+DV V DISL DYIGVQ +K+AT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct:    1 MAASAEIDAEIQQQLTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207          
BLAST of CV718954 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 313.538 bits (802), Expect = 8.723e-85
Identity = 154/190 (81.05%), Postives = 175/190 (92.11%), Query Frame = 3
Query:  219 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 788
            D+KLF +W+ +DVQ+NDISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of CV718954 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 313.538 bits (802), Expect = 8.723e-85
Identity = 154/190 (81.05%), Postives = 175/190 (92.11%), Query Frame = 3
Query:  219 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 788
            D+KLF +W+ +DVQ+NDISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of CV718954 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 311.612 bits (797), Expect = 3.315e-84
Identity = 153/190 (80.53%), Postives = 174/190 (91.58%), Query Frame = 3
Query:  219 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 788
            D+KLF +W+ +DVQ+NDISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIK IAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of CV718954 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 309.301 bits (791), Expect = 1.645e-83
Identity = 149/189 (78.84%), Postives = 174/189 (92.06%), Query Frame = 3
Query:  222 VKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 788
            VKLFNRW++EDV++ DISL+DYI +   ++  Y+PH+AGRY+ KRFRKA CPI+ERLTNSLMMHGRNNGKKLMAVRIV HA EIIHL+TDQNPIQ+ VDA++N GPRED+TRIGSAG VRRQAVD+SPLRRVNQAI LLTTGARE++FRN+K+IAECLA+ELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   28 VKLFNRWSYEDVEIRDISLTDYIQI---RSPVYLPHSAGRYAAKRFRKANCPIIERLTNSLMMHGRNNGKKLMAVRIVAHAFEIIHLMTDQNPIQIAVDAIVNCGPREDSTRIGSAGTVRRQAVDVSPLRRVNQAIALLTTGAREASFRNVKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 213          
BLAST of CV718954 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 306.99 bits (785), Expect = 8.165e-83
Identity = 151/190 (79.47%), Postives = 172/190 (90.53%), Query Frame = 3
Query:  219 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 788
            D+KLF +W+ +DVQ+NDISL DYI V+  K A Y+PH+AGRY+   FRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAECLADELINA KGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAANGFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of CV718954 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.179e-81
Identity = 155/207 (74.88%), Postives = 179/207 (86.47%), Query Frame = 3
Query:  168 MATAVVTQSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 788
            + T VV+ ++ P     ++KLF RW+ +DV VNDISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLT SLMM GRNNGKKLMA RIVKH+ EIIHLLT +NP+Q++V A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   28 LETNVVSTTELP-----EIKLFGRWSCDDVTVNDISLQDYISVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 228          
BLAST of CV718954 vs. ExPASy Swiss-Prot
Match: RS5_CAEEL (40S ribosomal protein S5 OS=Caenorhabditis elegans GN=rps-5 PE=1 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 6.469e-80
Identity = 148/196 (75.51%), Postives = 173/196 (88.27%), Query Frame = 3
Query:  201 PSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 788
            P+    +V LF +W+ + V V+DISL DYI V+  K+A Y+PH+AGR+ V+RFRKA CPIVERL NSLMMHGRNNGKKLM VRIVKHA EII+LLT +NP+QV+V+AVINSGPRED+TRIG AG VRRQAVD++PLRRVNQAI+LL TGARE+AFRN+KTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   16 PATEAPEVALFGKWSLQSVNVSDISLVDYIPVKE-KSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 210          
The following BLAST results are available for this feature:
BLAST of CV718954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RS5_CICAR1.297e-9690.3640S ribosomal protein S5 (Fragment) OS=Cicer ariet... [more]
RS52_ARATH2.890e-9685.9940S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS51_ARATH2.447e-9585.0240S ribosomal protein S5-1 OS=Arabidopsis thaliana... [more]
RS5_HUMAN8.723e-8581.0540S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
RS5_BOVIN8.723e-8581.0540S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=... [more]
RS5_MOUSE3.315e-8480.5340S ribosomal protein S5 OS=Mus musculus GN=Rps5 P... [more]
RS5_NEUCR1.645e-8378.8440S ribosomal protein S5 OS=Neurospora crassa GN=r... [more]
RS5_RAT8.165e-8379.4740S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS5A_DROME1.179e-8174.8840S ribosomal protein S5a OS=Drosophila melanogast... [more]
RS5_CAEEL6.469e-8075.5140S ribosomal protein S5 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0011E01_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0011E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV718954 ID=CV718954; Name=CV718954; organism=Citrus sinensis; type=EST; length=816bp
AGAACTCAGCGAGCGGCAGCCGATTCTTATTATTCCCTTTTCAAACCCCT
TCAGATAAACTAACGCACGCTTTCTTTTTCTTCCGCTTTCTTCTCCATTG
CTGATCATCTTGATTTCTTTTTAGTTTGAAAAACATTGTCTTTTAATATT
TTGTTGTGTTGGTAAGAATGGCGACTGCTGTAGTGACACAATCTCAAGAC
CCATCACAGCCTCAATACGATGTGAAGCTCTTCAATAGGTGGACTTTCGA
GGATGTTCAGGTCAATGACATTTCATTGAGTGATTATATTGGAGTCCAAG
CAGCAAAAAATGCAACCTATGTACCTCACACAGCTGGGAGGTACTCAGTG
AAGCGGTTTAGGAAGGCACAGTGCCCAATTGTTGAGAGGCTCACAAACTC
ACTGATGATGCATGGAAGAAACAATGGCAAGAAATTGATGGCCGTCAGGA
TTGTCAAGCACGCCATGGAAATCATTCACCTTTTGACTGACCAGAACCCA
ATTCAGGTCATTGTTGATGCTGTCATCAACAGTGGTCCAAGGGAAGACGC
TACCCGCATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCGGTTGATATTT
CCCCATTGCGCCGTGTGAATCAAGCAATCTATTTGCTGACCACTGGTGCT
CGTGAATCTGCTTTCCGTAATATCAAGACTATTGCGGAATGTTTGGCCGA
TGAACTCATTAATGCTGCCAAGGGTTCATCTAACAGCTATGCCATCAAGA
AGAAGGACGAGATCGAGCGAGTTGCTAAGGCCAATCGCTGAACTTTGGAC
AATGTTTTGTTTTTTA
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