CV718892

Overview
NameCV718892
Unique NameCV718892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV718892 vs. ExPASy Swiss-Prot
Match: TTG1_ARATH (Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis thaliana GN=TTG1 PE=1 SV=1)

HSP 1 Score: 418.698 bits (1075), Expect = 1.765e-116
Identity = 200/229 (87.34%), Postives = 218/229 (95.20%), Query Frame = -1
Query:   77 SSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 763
            S++EP++VLNNSK+SEFCAPLTSFDWN++EPKR+GTCSIDTTCTIWDIEK VVETQLIAHDKEV+DI WGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT+PVAELERH+A VNAIAWAPQS +HICS GDD+QA IWE  LP VAGPNGIDPMS+YSAGSEINQLQWS +QPDW+ IAF+NKMQLL+V
Sbjct:  115 STVEPISVLNNSKTSEFCAPLTSFDWNDVEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTMPVAELERHQASVNAIAWAPQSCKHICSGGDDTQALIWE--LPTVAGPNGIDPMSVYSAGSEINQLQWSSSQPDWIGIAFANKMQLLRV 341          
BLAST of CV718892 vs. ExPASy Swiss-Prot
Match: LWD1_ARATH (WD repeat-containing protein LWD1 OS=Arabidopsis thaliana GN=LWD1 PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 3.032e-92
Identity = 160/229 (69.87%), Postives = 188/229 (82.10%), Query Frame = -1
Query:   77 SSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 763
            S +E  + LN++K+SEFC PLTSFDWNE EP+RIGT S DTTCTIWDIE+  V+TQLIAHDKEV+DI WG   VFASVSADGSVR+FDLRDKEHSTIIYES +PDTPL+RL WNKQD RYMATI+MDS KVV+LDIR P LPV EL+RH+A VNAIAWAP S  HIC+ GDDSQA IW++         G+DP+  Y+AG+EI QLQWS +QPDW+AIAFS K+Q+L+V
Sbjct:  118 SRVELKSCLNSNKNSEFCGPLTSFDWNEAEPRRIGTSSTDTTCTIWDIEREAVDTQLIAHDKEVFDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPALPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDISSMGQHVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 346          
BLAST of CV718892 vs. ExPASy Swiss-Prot
Match: LWD2_ARATH (WD repeat-containing protein LWD2 OS=Arabidopsis thaliana GN=LWD2 PE=2 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 9.752e-91
Identity = 156/230 (67.83%), Postives = 188/230 (81.74%), Query Frame = -1
Query:   77 DSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 766
            +S +E  + L++ K+SEF  P+TSFDWNE EP+RIGT SIDTTCTIWDIE+ VV+TQLIAHDKEVYDI WG   VFASVS DGSVR+FDLRDKEHSTIIYES +P TPL+RL+WNKQD RYMAT++M S K+V+LDIR P LPV EL+RH+A VNAIAWAP S  HICS GDDSQA IW++         G+DP+  Y+AG+E+ QLQWS +QPDW+AIAFSNK+Q+L+V
Sbjct:  117 ESRVELKSCLSSDKNSEFSGPITSFDWNEAEPRRIGTSSIDTTCTIWDIEREVVDTQLIAHDKEVYDIAWGGVGVFASVSEDGSVRVFDLRDKEHSTIIYESGEPSTPLVRLSWNKQDPRYMATVIMGSAKIVVLDIRFPALPVVELQRHQASVNAIAWAPHSSSHICSAGDDSQALIWDISSMGQHVEGGLDPILAYTAGAEVEQLQWSSSQPDWVAIAFSNKLQILRV 346          
BLAST of CV718892 vs. ExPASy Swiss-Prot
Match: DCAF7_MOUSE (DDB1- and CUL4-associated factor 7 OS=Mus musculus GN=Dcaf7 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.564e-72
Identity = 139/247 (56.28%), Postives = 171/247 (69.23%), Query Frame = -1
Query:   77 VGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVV-----------ETQLIAHDKEVYDICWGEAR----VFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 772
            VG++      +LNN+K+S+FCAPLTSFDWNE++P  +GT SIDTTCTIW +E G V           +TQLIAHDKEVYDI +  A     +FASV ADGSVR+FDLR  EHSTIIYE PQ   PLLRL WNKQD  Y+AT+ MD  +VVILD+R P  PVA L  HRACVN IAWAP S  HIC+  DD QA IW++   P A     DP+  Y+A  EIN +QW+  QPDW+AI ++N +++L+V
Sbjct:  100 VGETETRLECLLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQHH-PLLRLCWNKQDPNYLATMAMDGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRAIE---DPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV 342          
BLAST of CV718892 vs. ExPASy Swiss-Prot
Match: DCAF7_HUMAN (DDB1- and CUL4-associated factor 7 OS=Homo sapiens GN=DCAF7 PE=1 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.564e-72
Identity = 139/247 (56.28%), Postives = 171/247 (69.23%), Query Frame = -1
Query:   77 VGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVV-----------ETQLIAHDKEVYDICWGEAR----VFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 772
            VG++      +LNN+K+S+FCAPLTSFDWNE++P  +GT SIDTTCTIW +E G V           +TQLIAHDKEVYDI +  A     +FASV ADGSVR+FDLR  EHSTIIYE PQ   PLLRL WNKQD  Y+AT+ MD  +VVILD+R P  PVA L  HRACVN IAWAP S  HIC+  DD QA IW++   P A     DP+  Y+A  EIN +QW+  QPDW+AI ++N +++L+V
Sbjct:  100 VGETETRLECLLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQHH-PLLRLCWNKQDPNYLATMAMDGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRAIE---DPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV 342          
BLAST of CV718892 vs. ExPASy Swiss-Prot
Match: DCAF7_DICDI (DDB1- and CUL4-associated factor 7 homolog OS=Dictyostelium discoideum GN=wdr68 PE=3 SV=2)

HSP 1 Score: 266.159 bits (679), Expect = 1.464e-70
Identity = 133/216 (61.57%), Postives = 162/216 (75.00%), Query Frame = -1
Query:   77 SEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEAR-VFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 721
            SEFCAPL+SFDWNE +P  + T SIDTTCTIW+IE G  +TQLIAHDKEV+DI +     +FASV ADGS+R+FDLR+ EHSTIIYE+P    PLLRL WNKQD  Y+ATI  DS KV+ILDIR P++P AEL  H++ VN I+WAP S  HIC+V DD QA IW+L   P       DP+  Y+A +EINQL WS +QPDW+AIAFS+ +Q+LKV
Sbjct:  114 SEFCAPLSSFDWNETDPSLLATSSIDTTCTIWNIETGQAKTQLIAHDKEVFDIAFARGTDLFASVGADGSLRMFDLRNLEHSTIIYETPS-FVPLLRLCWNKQDPNYLATIQQDSPKVIILDIRVPSVPAAELVFHKSAVNGISWAPHSSCHICTVSDDKQALIWDLSSMPKPIE---DPLLTYNALAEINQLSWSSSQPDWIAIAFSSHLQILKV 325          
BLAST of CV718892 vs. ExPASy Swiss-Prot
Match: YBE8_SCHPO (Uncharacterized WD repeat-containing protein C17D11.08 OS=Schizosaccharomyces pombe GN=SPBC17D11.08 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.633e-39
Identity = 102/287 (35.54%), Postives = 137/287 (47.74%), Query Frame = -1
Query:   77 DSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW--GEARVFASVSADGSVRIFDLRDKEHSTIIYE---------------SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLP----------------------------------------PVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 766
            DS +   A L+    +   APLTSFDW + +P  I   S+DTTCT+WDI     +TQLIAHDKEVYD+ +      VF SV ADGSVR+FDLR  +HSTIIYE               SP    PLLRL+    D+  MAT   +S+ V ++DIR P    A L  H+  VNA+ W P S+  + + GDD    +W+L  P                                        P+   N   P+  +    E+N L WS  + D LA+ +   +++LKV
Sbjct:  148 DSPLLCQASLSTHVKTHNNAPLTSFDWCKTDPSYIVVSSLDTTCTVWDIVAQQSKTQLIAHDKEVYDVAFLKDSINVFVSVGADGSVRMFDLRSLDHSTIIYEGDSTFWKRNGDYTNASPPVSAPLLRLSACDSDVNLMATFHHNSSDVQMIDIRVPGTAYATLRGHKGDVNAVKWMPGSKSKLATCGDDCVVSLWDLDQPVNPSPAPTLSVSGTTPGMTGSTSEYVTPVSSVNSMRETASPLNADNQYSPLLSWKLEHEVNNLSWS-VKNDGLAVVYGKSLEILKV 433          
BLAST of CV718892 vs. ExPASy Swiss-Prot
Match: YP247_YEAST (WD repeat-containing protein YPL247C OS=Saccharomyces cerevisiae GN=YPL247C PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.108e-37
Identity = 99/278 (35.61%), Postives = 131/278 (47.12%), Query Frame = -1
Query:   77 PLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKG-VVETQLIAHDKEVYDICW--GEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPD---------TP-------LLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWEL------------PLPPVAG-----PNGIDPMSMYSAGS--------------------------------EINQLQWSPAQPDWLAIAFSNKMQLLKV 706
            P+TSFDWN ++   I + SIDTTC +WD++    V+TQLIAHD EV+D+ +     ++FAS   DGSVR+FDLR   HSTIIYE P            TP       LLRL  +  D   +AT   DSNK++ILD+R+P  P+  L+ H + VN I W P  R  + S GDD Q   W+L              P + G     P+G   M+   AGS                                EIN + W P + DW       K Q ++V
Sbjct:  245 PITSFDWNTVDTNLIISSSIDTTCIVWDLQSSHYVKTQLIAHDSEVFDVRFLTKSTQLFASCGGDGSVRVFDLRSLAHSTIIYEPPSSSVSGATAGTITPSSKGSDALLRLEPSPYDPNVLATFAADSNKIIILDMRNPESPILNLQGHGSSVNGIKWHPTKRNVLLSCGDDCQVLYWDLNSSFMEINAAGSKSPSIHGTSLEDPDGDTEMTDGGAGSGLNEDPLSLNNNSKQVCKTLETPNMMYANKTQEINNIAWRPQRGDWFGCVSGKKFQNVRV 522          
BLAST of CV718892 vs. ExPASy Swiss-Prot
Match: HAT2_ASHGO (Histone acetyltransferase type B subunit 2 OS=Ashbya gossypii GN=HAT2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.430e-11
Identity = 58/209 (27.75%), Postives = 99/209 (47.37%), Query Frame = -1
Query:   62 SIDTTCTIWDIEKGVVETQLI-AHDKEVYDICWGE--ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVA-----GPNGIDPMSMYSAG--SEINQLQWSPAQPDWLAIAF--SNKMQLLKV*SLLV 652
            S DTT  +WDIE       ++ +HD  V D+ W E  + VF +VS D ++++ D R +       +     +P   L+++K     +A   +DS ++ + D+R  + P+  +  H+  V  + ++P +   ICS G D +A IW+L             +G   + M  AG  S +N+  ++P  P WL  +    N +Q  KV   LV
Sbjct:  206 SDDTTVALWDIEAAKKPKSILTSHDDIVNDVKWHEFESNVFGTVSEDKTLQVHDKRVRLEPV---KKLPTASPFNTLSFSKHSRNLLAAAGVDS-QIYLYDMRDMSSPLHVMSGHQDSVTTVEFSPHTDGIICSSGSDRRAIIWDLTQIGAEQSQDDADDGAPELMMMHAGHRSPVNEFSFNPQIP-WLLASTEEDNVIQAWKVSMKLV 409          
BLAST of CV718892 vs. ExPASy Swiss-Prot
Match: GRWD1_MOUSE (Glutamate-rich WD repeat-containing protein 1 OS=Mus musculus GN=Grwd1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.642e-11
Identity = 52/211 (24.64%), Postives = 95/211 (45.02%), Query Frame = -1
Query:  125 SFDWNEIEPKRIGTCSIDTTCTIWDIEKG----VVETQLIAHDKEVYDICWG--EARVFASVSADGSVRIFDLRDKE-HSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRS--PTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPL--PPVAGPNGIDP---------MSMYSAGSEINQLQWSPAQP 697
            + DW+   P R+ T        +W   +G    V +   + H + V D+ W   E  VFAS SAD S+RI+D+R     + ++  +   D  +  ++W++++   ++    D   + + D+R      PVA  ++H A V ++ W PQ      + G D+Q   W+L +   P  G    DP         + ++   +++ +L W P  P
Sbjct:  219 ALDWSPRVPGRLLTGDCQKNVHLWTPTEGGSWNVDQRPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTATAHDGDVNVISWSRREPFLLSG--GDDGALKVWDLRQFKSGSPVATFKQHMAPVTSVEWHPQDSGVFAASGADNQITQWDLAVERDPEPGETETDPGLAALPQQLLFVHQGETDLKELHWHPQCP 427          
The following BLAST results are available for this feature:
BLAST of CV718892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
TTG1_ARATH1.765e-11687.34Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis ... [more]
LWD1_ARATH3.032e-9269.87WD repeat-containing protein LWD1 OS=Arabidopsis t... [more]
LWD2_ARATH9.752e-9167.83WD repeat-containing protein LWD2 OS=Arabidopsis t... [more]
DCAF7_MOUSE1.564e-7256.28DDB1- and CUL4-associated factor 7 OS=Mus musculus... [more]
DCAF7_HUMAN1.564e-7256.28DDB1- and CUL4-associated factor 7 OS=Homo sapiens... [more]
DCAF7_DICDI1.464e-7061.57DDB1- and CUL4-associated factor 7 homolog OS=Dict... [more]
YBE8_SCHPO6.633e-3935.54Uncharacterized WD repeat-containing protein C17D1... [more]
YP247_YEAST8.108e-3735.61WD repeat-containing protein YPL247C OS=Saccharomy... [more]
HAT2_ASHGO3.430e-1127.75Histone acetyltransferase type B subunit 2 OS=Ashb... [more]
GRWD1_MOUSE7.642e-1124.64Glutamate-rich WD repeat-containing protein 1 OS=M... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0011C14_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0011C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV718892 ID=CV718892; Name=CV718892; organism=Citrus sinensis; type=EST; length=775bp
GAACACTATAAATTTCCAAGCAAAAGTACATCCAAGCAAAAGTACATAGT
TAGCTATCCCAAACGAGCAAAGATCAAACTTTCAAAAGTTGCATTTTGTT
AGAGAAAGCAATTGCAAGCCAATCAGGCTGTGCAGGAGACCATTGGAGTT
GGTTAATTTCAGAGCCAGCAGAGTACATGGACATAGGATCAATACCATTA
GGTCCAGCCACTGGTGGCAATGGCAATTCCCAAATGAAAGCCTGCGAATC
ATCTCCAACAGAACATATATGCCTACGACTCTGAGGAGCCCACGCAATGG
CATTGACACAAGCTCTATGCCTCTCCAATTCAGCAACCGGCAATGTTGGC
GACCTGATATCCAAAATGACAACTTTATTACTGTCCATCAATATAGTTGC
CATGTACCTTAAATCCTGCTTATTCCAAGCTAATCTAAGCAATGGGGTGT
CGGGTTGCGGGCTCTCGTAAATAATCGTGGAATGTTCTTTGTCTCTCAAA
TCGAAAATTCTCACTGACCCATCAGCAGAAACTGAAGCAAAAACCCTAGC
TTCACCCCAGCAGATGTCGTAAACCTCTTTGTCATGAGCAATAAGTTGAG
TTTCAACAACACCCTTTTCAATATCCCAGATAGTGCAAGTAGTGTCGATG
CTACAAGTTCCAATTCTCTTGGGTTCAATCTCGTTCCAATCAAATGAAGT
CAAAGGAGCGCAAAACTCACTGCTCTTGCTGTTGTTGAGCACGGCAACGG
GCTCGATCGATGAATCGCCAACGTC
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