CV718880

Overview
NameCV718880
Unique NameCV718880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV718880 vs. ExPASy Swiss-Prot
Match: MFT_ARATH (Protein MOTHER of FT and TF 1 OS=Arabidopsis thaliana GN=MFT PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.710e-67
Identity = 114/143 (79.72%), Postives = 133/143 (93.01%), Query Frame = -3
Query:  259 YGSKHVTNGCDVKPSMATSPPKLNITGHSDELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGL-VEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 684
            +G KH+TNGC++KPS A +PPK+NI+GHSDELYTLVMTDPDAPSPSEP MREWVHWIVVDIPGGTNP++G EILPYM PRPPVGIHRYI+VLF+Q +P+GL V+QPP+RANF+TR+FAG+ DLGLPVAT+YFN QKEPASRRR
Sbjct:   31 FGPKHITNGCEIKPSTAVNPPKVNISGHSDELYTLVMTDPDAPSPSEPNMREWVHWIVVDIPGGTNPSRGKEILPYMEPRPPVGIHRYILVLFRQNSPVGLMVQQPPSRANFSTRMFAGHFDLGLPVATVYFNAQKEPASRRR 173          
BLAST of CV718880 vs. ExPASy Swiss-Prot
Match: CEN_ARATH (Protein CENTRORADIALIS-like OS=Arabidopsis thaliana GN=CEN PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.081e-34
Identity = 72/140 (51.43%), Postives = 94/140 (67.14%), Query Frame = -3
Query:  259 KHVTNGCDVKPSMATSPPKLNITGHS-DELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 675
            K V NG ++ PS+ T  PK+ + G      +TLVMTDPD P PS+P +RE +HWIV DIPG T+ + G EI+ Y  PRP +GIHR++ +LF+Q     +V  P  R  FNTR FA   DLGLPVA ++FNCQ+E A+RRR
Sbjct:   36 KQVYNGHELFPSVVTYKPKVEVHGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDVSFGKEIIGYEMPRPNIGIHRFVYLLFKQTRRGSVVSVPSYRDQFNTREFAHENDLGLPVAAVFFNCQRETAARRR 175          
BLAST of CV718880 vs. ExPASy Swiss-Prot
Match: CET2_TOBAC (CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.256e-34
Identity = 69/141 (48.94%), Postives = 96/141 (68.09%), Query Frame = -3
Query:  259 SKHVTNGCDVKPSMATSPPKLNITGHS-DELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 678
            SKHV NG ++ PS  TS P++ + G      +T++M DPD P PS+P +RE +HWIV DIPG T+ + G EI+ Y  PRP +GIHR++ +LF+QK    ++  P +R  FNTR FA   +LG PVA ++FNCQ+E A+RRR
Sbjct:   35 SKHVYNGHELFPSSVTSKPRVEVHGGDLRSFFTMIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGKEIVGYEMPRPNIGIHRFVFLLFKQKKRQTVLTAPLSRDRFNTRKFAEENELGSPVAAVFFNCQRETAARRR 175          
BLAST of CV718880 vs. ExPASy Swiss-Prot
Match: CET4_TOBAC (CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.864e-34
Identity = 70/141 (49.65%), Postives = 95/141 (67.38%), Query Frame = -3
Query:  259 SKHVTNGCDVKPSMATSPPKLNITGHS-DELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 678
            SKHV NG ++ PS  TS P++ + G      +TL+M DPD P PS+P +RE +HWIV DIPG T+ + G EI+ Y  PRP +GIHR++ +LF+QK    L+  P +R  FNTR F+   +LG PVA  +FNCQ+E A+RRR
Sbjct:   35 SKHVYNGHELFPSSVTSKPRVEVHGGDLRSFFTLIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGREIVGYEMPRPNIGIHRFVFLLFKQKKRQTLLSAPLSRDRFNTRKFSEENELGSPVAAAFFNCQRETAARRR 175          
BLAST of CV718880 vs. ExPASy Swiss-Prot
Match: CEN_ANTMA (Protein CENTRORADIALIS OS=Antirrhinum majus GN=CEN PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.864e-34
Identity = 70/142 (49.30%), Postives = 95/142 (66.90%), Query Frame = -3
Query:  259 KHVTNGCDVKPSMATSPPKLNITGHS-DELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPT--RANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 675
            KHV NG ++ PS  TS P++ + G      +TL+MTDPD P PS+P +RE +HWIV DIPG T+ + G E++ Y  PRP +GIHR++ +LF+QK     +  PP   R  FNTR F    +LGLPVA ++FNCQ+E A+RRR
Sbjct:   40 KHVYNGHELFPSAVTSTPRVEVHGGDMRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIHRFVFLLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRETAARRR 181          
BLAST of CV718880 vs. ExPASy Swiss-Prot
Match: TFL1_ARATH (Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana GN=TFL1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.449e-33
Identity = 68/143 (47.55%), Postives = 95/143 (66.43%), Query Frame = -3
Query:  259 YGSKHVTNGCDVKPSMATSPPKLNITGHS-DELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 684
            Y  K V+NG ++ PS  +S P++ I G      +TLVM DPD P PS+P ++E +HWIV +IPG T+   G E++ Y  PRP +GIHR++ VLF+QK    +    P+R +FNTR FA   DLGLPVA ++FN Q+E A+R+R
Sbjct:   35 YNKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLFRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 177          
BLAST of CV718880 vs. ExPASy Swiss-Prot
Match: CET1_TOBAC (CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.691e-32
Identity = 67/142 (47.18%), Postives = 94/142 (66.20%), Query Frame = -3
Query:  259 GSKHVTNGCDVKPSMATSPPKLNITGHS-DELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 681
            GSK V NG ++ P++  + P++ I G      YTL+MTDPD P PS+P +RE +HWIV DIPG T+ + G EI+ Y  P+P +GIHRY+++L++Q      V+   TR +FNTR +     LG PVA +YFN Q+E A+RRR
Sbjct:   34 GSKQVFNGHELMPAVIAAKPRVEIGGEDMRSAYTLIMTDPDVPGPSDPYLREHLHWIVTDIPGSTDSSFGREIVSYESPKPVIGIHRYVLLLYKQSG-RQTVKPAATRDHFNTRRYTAENGLGSPVAAVYFNAQRETAARRR 174          
BLAST of CV718880 vs. ExPASy Swiss-Prot
Match: TSF_ARATH (Protein TWIN SISTER of FT OS=Arabidopsis thaliana GN=TSF PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.884e-32
Identity = 73/139 (52.52%), Postives = 88/139 (63.31%), Query Frame = -3
Query:  277 YGSKHVTNGCDVKPSMATSPPKLNITGHS-DELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLG--LVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKE 684
            YG + VTNG D++PS   + P + I G      YTLVM DPD PSPS P  RE++HW+V DIP  T  A G E++ Y  PRPP GIHR ++VLF+Q   LG   V  P  R  FNTR FA   +LGLPVA  YFNCQ+E
Sbjct:   32 YGHREVTNGLDLRPSQVLNKPIVEIGGDDFRNFYTLVMVDPDVPSPSNPHQREYLHWLVTDIPATTGNAFGNEVVCYESPRPPSGIHRIVLVLFRQ---LGRQTVYAPGWRQQFNTREFAEIYNLGLPVAASYFNCQRE 167          
BLAST of CV718880 vs. ExPASy Swiss-Prot
Match: SELFP_SOLLC (Protein SELF-PRUNING OS=Solanum lycopersicum GN=SP PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.766e-32
Identity = 65/141 (46.10%), Postives = 94/141 (66.67%), Query Frame = -3
Query:  259 SKHVTNGCDVKPSMATSPPKLNITGHS-DELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 678
            +KHV NG +  PS  TS P++ + G      +TL+M DPD P PS+P +RE +HWIV DIPG T+ + G E++ Y  PRP +GIHR++ +LF+QK    +   P +R  F++R F+   +LG PVA ++FNCQ+E A+RRR
Sbjct:   35 NKHVYNGHEFFPSSVTSKPRVEVHGGDLRSFFTLIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGREVVGYEMPRPNIGIHRFVFLLFKQKKRQTISSAPVSRDQFSSRKFSEENELGSPVAAVFFNCQRETAARRR 175          
BLAST of CV718880 vs. ExPASy Swiss-Prot
Match: FT_ARATH (Protein FLOWERING LOCUS T OS=Arabidopsis thaliana GN=FT PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 69/139 (49.64%), Postives = 88/139 (63.31%), Query Frame = -3
Query:  277 YGSKHVTNGCDVKPSMATSPPKLNITGHS-DELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLG--LVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKE 684
            YG + VTNG D++PS   + P++ I G      YTLVM DPD PSPS P +RE++HW+V DIP  T    G EI+ Y  P P  GIHR + +LF+Q   LG   V  P  R NFNTR FA   +LGLPVA +++NCQ+E
Sbjct:   32 YGQREVTNGLDLRPSQVQNKPRVEIGGEDLRNFYTLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVCYENPSPTAGIHRVVFILFRQ---LGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNCQRE 167          
The following BLAST results are available for this feature:
BLAST of CV718880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
MFT_ARATH4.710e-6779.72Protein MOTHER of FT and TF 1 OS=Arabidopsis thali... [more]
CEN_ARATH3.081e-3451.43Protein CENTRORADIALIS-like OS=Arabidopsis thalian... [more]
CET2_TOBAC5.256e-3448.94CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE... [more]
CET4_TOBAC6.864e-3449.65CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE... [more]
CEN_ANTMA6.864e-3449.30Protein CENTRORADIALIS OS=Antirrhinum majus GN=CEN... [more]
TFL1_ARATH4.449e-3347.55Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana ... [more]
CET1_TOBAC1.691e-3247.18CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE... [more]
TSF_ARATH2.884e-3252.52Protein TWIN SISTER of FT OS=Arabidopsis thaliana ... [more]
SELFP_SOLLC3.766e-3246.10Protein SELF-PRUNING OS=Solanum lycopersicum GN=SP... [more]
FT_ARATH8.391e-3249.64Protein FLOWERING LOCUS T OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0011C08_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0011C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV718880 ID=CV718880; Name=CV718880; organism=Citrus sinensis; type=EST; length=689bp
TTTTTTTTTTTTTTTTTCGATTGAAACGAAAGCTTATTACAAGGGAAACA
GCTTACATTACATGAACTTTAGCCTGATTAAACAAAGCCAACACCTACAT
GCTAAGACTAAAACGAGACAGTACACTTGCGGGGAAAAAAAAAAGAAAGA
AAGGAAAAGGAAAACCAAAACCAAAAGAGAAACATATTAAAGACACCACA
ACTCTCTTTGTCTATTACACTTGAGCTGAGCACTAGCTAGCGCCTCCTTG
ATTGTTCAACGCCTGCGGCTTGCCGGTTCCTTCTGACAGTTGAAGTAAAT
AGTGGCCACAGGGAGGCCAAGATCCAGATTCCCAGCAAAGAGCCGAGTGT
TGAAGTTAGCCCTCGTTGGTGGCTGCTCGACCAGCCCCAATGGAGCCTTC
TGCTGAAACAGCACCATTATGTATCGATGAATCCCCACCGGTGGCCGTGG
CCCCATGTACGGCAGAATCTCCATCCCTTGAGCGGGGTTAGTGCCACCAG
GAATGTCCACGACGATCCAGTGAACCCACTCCCTCATGCGTGGCTCGCTT
GGACTCGGAGCATCAGGATCAGTCATCACCAAAGTATAAAGCTCATCAGA
GTGGCCGGTTATGTTGAGTTTTGGTGGACTGGTAGCCATTGAAGGCTTGA
CGTCACATCCGTTGGTGACATGCTTTGAGCCATAGTCCT
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