CX043377

Overview
NameCX043377
Unique NameCX043377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043377 vs. ExPASy Swiss-Prot
Match: RN217_XENLA (Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis GN=rnf217 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = -3
Query:  307 ECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKE-----KKWSRCPHCKYYVERTEGCPHMTC-RCQFQFCYGCEAEWTQ 567
            +CP C  ++C +C+ PWH GVNC EY+        + D ++R  A E     +   +CP CK +++RTEGC HMTC +C   FCY C   + Q
Sbjct:  114 QCPSCQFIWCFRCHAPWHEGVNCREYK--------KGDKLLRHWANEIEHGQRNAQKCPRCKVHIQRTEGCDHMTCSQCNTNFCYRCGERYRQ 198          
BLAST of CX043377 vs. ExPASy Swiss-Prot
Match: RN217_HUMAN (Probable E3 ubiquitin-protein ligase RNF217 OS=Homo sapiens GN=RNF217 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 46/131 (35.11%), Postives = 67/131 (51.15%), Query Frame = -3
Query:  307 IDASQRFYCPFKDCSAMLVYENNGETVI---SES----ECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKE-----KKWSRCPHCKYYVERTEGCPHMTC-RCQFQFCYGCEAEWTQ 660
            ID+S +   P   C     ++  G       SES    +CP C  ++C +C+ PWH GVNC+EY+        + D ++R  A E     +   +CP CK +++RTEGC HMTC +C   FCY C   + Q
Sbjct:   47 IDSSTK---PCPQCKHFTTFKKKGHIPTPSRSESKYKIQCPTCQFVWCFKCHSPWHEGVNCKEYK--------KGDKLLRHWASEIEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRCGERYRQ 166          
BLAST of CX043377 vs. ExPASy Swiss-Prot
Match: R144A_XENTR (Probable E3 ubiquitin-protein ligase RNF144A OS=Xenopus tropicalis GN=rnf144a PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 36/108 (33.33%), Postives = 48/108 (44.44%), Query Frame = -3
Query:  325 RFYCPFKDCSAMLVYENNGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 645
            R +CP   C A+   +  G       +C  C   FC+ C   WHPG  C E   +     G      + L  +    RCP CK Y+ER EGC  M C+ C+  FC+ C
Sbjct:  108 RTWCPSSSCQAVCKLQEKGIQNPQLVQCSACDIEFCSACKANWHPGQGCPENMAITF-LPGDSSSFFKSLEDDVPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYC 214          
BLAST of CX043377 vs. ExPASy Swiss-Prot
Match: R144A_HUMAN (Probable E3 ubiquitin-protein ligase RNF144A OS=Homo sapiens GN=RNF144A PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 35/108 (32.41%), Postives = 48/108 (44.44%), Query Frame = -3
Query:  325 RFYCPFKDCSAMLVYENNGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 645
            R +CP   C A+   ++ G       +C  C   FC+ C   WHPG  C E   +     G      +    +    RCP CK Y+ER EGC  M C+ C+  FC+ C
Sbjct:  108 RTWCPASTCQAVCQLQDVGLQTPQPVQCKACRMEFCSTCKASWHPGQGCPETMPITF-LPGETSAAFKMEEDDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYC 214          
BLAST of CX043377 vs. ExPASy Swiss-Prot
Match: R1441_DANRE (Probable E3 ubiquitin-protein ligase RNF144A-A OS=Danio rerio GN=rnf144aa PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 36/114 (31.58%), Postives = 52/114 (45.61%), Query Frame = -3
Query:  325 LIDASQRFYCPFKDCSAMLVYENNGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 663
            L+D S R +CP   C A+   + +   +     C  C   FC+ C   WHP  +C+E   +     G      +    +    RCP CK Y+ER EGC  M C+ C+  FC+ C
Sbjct:  103 LLDPS-RTWCPSSTCQAVCQLKESDTVLPQLVRCSVCTLEFCSACKASWHPDQDCQENVPITSFLPGESSSFFKADDDDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYC 215          
BLAST of CX043377 vs. ExPASy Swiss-Prot
Match: R144B_HUMAN (E3 ubiquitin-protein ligase RNF144B OS=Homo sapiens GN=RNF144B PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 37/110 (33.64%), Postives = 55/110 (50.00%), Query Frame = -3
Query:  325 RFYCPFKDCSAM--LVYENNGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 645
            R +CP  DC  +  +   + G+ V+ E  CP CH  FC+ C   WH  V+C + Q + +    R    +     E    +CP C+ Y+ER EGC  M C+ C+  FC+ C
Sbjct:  118 RTWCPVADCQTVCPVASSDPGQPVLVE--CPSCHLKFCSCCKDAWHAEVSCRDSQPIVLPTEHR---ALFGTDAEAPIKQCPVCRVYIERNEGCAQMMCKNCKHTFCWYC 222          
BLAST of CX043377 vs. ExPASy Swiss-Prot
Match: R1442_DANRE (Probable E3 ubiquitin-protein ligase RNF144A-B OS=Danio rerio GN=rnf144ab PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 34/108 (31.48%), Postives = 47/108 (43.52%), Query Frame = -3
Query:  325 RFYCPFKDCSAMLVYENNGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 645
            R +CP   C A+         +    +CP C   FC+ C    H G  C+E   +     G     ++    E    RCP CK Y+ER EGC  M C+ C+  FC+ C
Sbjct:  108 RTWCPSSSCQAVCQLNEAEVQLPQPVQCPECSLRFCSACRADCHTGQACQEMLPITTFLPGENGSNLKSQEDEAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYC 215          
BLAST of CX043377 vs. ExPASy Swiss-Prot
Match: R144A_MOUSE (Probable E3 ubiquitin-protein ligase RNF144A OS=Mus musculus GN=Rnf144a PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 34/108 (31.48%), Postives = 48/108 (44.44%), Query Frame = -3
Query:  325 RFYCPFKDCSAMLVYENNGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 645
            R +CP   C A+   ++ G       +C  C   FC+ C   WHPG  C E   +     G      +    +    RCP C+ Y+ER EGC  M C+ C+  FC+ C
Sbjct:  108 RTWCPASTCQAVCQLQDIGLQTPQLVQCKACDMEFCSACKARWHPGQGCPETMPITF-LPGETSSAFKMEEGDAPIKRCPKCRVYIERDEGCAQMMCKNCKHAFCWYC 214          
BLAST of CX043377 vs. ExPASy Swiss-Prot
Match: R144B_BOVIN (E3 ubiquitin-protein ligase RNF144B OS=Bos taurus GN=RNF144B PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 40/111 (36.04%), Postives = 56/111 (50.45%), Query Frame = -3
Query:  325 RFYCPFKDCSAM--LVYENNGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQ-RLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 645
            R +CP  DC  +  +   + G+ V+ E  CP CH  FC+ C   WH  V+C + Q  +   E G   L   E     K  +CP C+ Y+ER EGC  M C+ C+  FC+ C
Sbjct:  119 RTWCPVADCQTVCPVATSDPGQPVLVE--CPSCHLKFCSCCKDAWHAEVSCRDSQPGILPTEHG--TLFGTETDAPIK--QCPVCRVYIERNEGCAQMMCKNCKHTFCWYC 223          
The following BLAST results are available for this feature:
BLAST of CX043377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
RN217_XENLA1.837e-1639.78Probable E3 ubiquitin-protein ligase RNF217 OS=Xen... [more]
RN217_HUMAN2.399e-1635.11Probable E3 ubiquitin-protein ligase RNF217 OS=Hom... [more]
R144A_XENTR5.532e-1333.33Probable E3 ubiquitin-protein ligase RNF144A OS=Xe... [more]
R144A_HUMAN9.436e-1332.41Probable E3 ubiquitin-protein ligase RNF144A OS=Ho... [more]
R1441_DANRE1.232e-1231.58Probable E3 ubiquitin-protein ligase RNF144A-A OS=... [more]
R144B_HUMAN4.683e-1233.64E3 ubiquitin-protein ligase RNF144B OS=Homo sapien... [more]
R1442_DANRE4.683e-1231.48Probable E3 ubiquitin-protein ligase RNF144A-B OS=... [more]
R144A_MOUSE1.043e-1131.48Probable E3 ubiquitin-protein ligase RNF144A OS=Mu... [more]
R144B_BOVIN3.964e-1136.04E3 ubiquitin-protein ligase RNF144B OS=Bos taurus ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_10F08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10F08-L16-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043377 ID=CX043377; Name=CX043377; organism=Citrus sinensis; type=EST; length=722bp
TTTTTTTTTTTTTTTTTGAAAATAATCTCTTTTTATTATTGTGTGGACAG
TGGCGAAATGGATTTTGGTTATCGACATTAAAGATTATTACACAAAAAAT
ATAAACTTAAGGGGGTTAGAAAATAAAATATAACACAATTGATTTCACAC
TTCTTCACAATCTGCTTCTAGTCTTATAATAATCTCACAAAACAGTCTTT
AAAAGGATGCTGTTTAAGGTTAAATATCAATAGATAATTCATATTCTTAA
TATTCTAAATTCGCAGTCCTATTAATATGTTATTTTCTTGAGCAACCGCC
ATGGTTTTGAGTCCATTCTGCTTCACATCCATAACAAAACTGAAATTGGC
ACCTGCAAGTCATATGAGGGCAACCTTCAGTTCTTTCAACATAGTATTTG
CAATGAGGGCACCTACTCCATTTCTTCTCCTTAGCAAGCTCTCTCACCAT
TAAATCTTCTCTGCCTCTTTCATCAACATTCAGTCTTTGATACTCCTCAC
AATTAACACCAGGATGCCATGGCACATAACACTGAGCACAAAACAATCTA
TGGCAAAAAGGGCACTCAGATTCACTTATAACAGTTTCTCCATTATTTTC
GTAAACCAACATGGCTGAACAATCCTTGAATGGGCAGTAAAACCTCTGCG
AAGCATCAATCAGCTCCTGACAAAGTGCTTCCTCCCAAAGCTCAAGCACT
TCTTTTGGAAGCACAGGCCTAC
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