CX043372

Overview
NameCX043372
Unique NameCX043372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9665 contig Csv1_Contig9665:729..1437. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043372 vs. ExPASy Swiss-Prot
Match: CDC21_MEDSA (Cell division control protein 2 homolog 1 (Fragment) OS=Medicago sativa GN=CDC2A PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 7.384e-71
Identity = 121/140 (86.43%), Postives = 134/140 (95.71%), Query Frame = -3
Query:  288 IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFVP 707
            IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEM N+RPL PGDSEIDELFKIFR+LGTPNEDTWPGVTSLPDFKS FP+WPSK+L TVV NLEPAG+DLL+ MLC+DP++RITARSA+EHEYF+D++FVP
Sbjct:  152 IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMANRRPLSPGDSEIDELFKIFRILGTPNEDTWPGVTSLPDFKSTFPRWPSKDLATVVPNLEPAGLDLLNSMLCLDPTKRITARSAVEHEYFKDIKFVP 291          
BLAST of CX043372 vs. ExPASy Swiss-Prot
Match: CDC2_CHERU (Cell division control protein 2 homolog OS=Chenopodium rubrum GN=CDC2 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.644e-71
Identity = 123/140 (87.86%), Postives = 134/140 (95.71%), Query Frame = -3
Query:  288 IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFVP 707
            IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQ+PLFPGDSEIDELFKIFR LGTPNE+TWPGVTSLPDFKS+FPKW SK+L  VV NL+PAGIDLL+KMLC+DPS+RITAR+ALEHEYF+D+ FVP
Sbjct:  155 IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRTLGTPNEETWPGVTSLPDFKSSFPKWISKDLSAVVPNLDPAGIDLLNKMLCLDPSKRITARNALEHEYFKDIGFVP 294          
BLAST of CX043372 vs. ExPASy Swiss-Prot
Match: CDC2A_ANTMA (Cell division control protein 2 homolog A OS=Antirrhinum majus GN=CDC2A PE=2 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 1.819e-69
Identity = 121/140 (86.43%), Postives = 133/140 (95.00%), Query Frame = -3
Query:  288 IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFVP 707
            IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRV+GTPNE+TWPGVTSLPDFKSAFPKWP+KEL  VV NL+ +G+DLL KML +DPS+RITAR+AL+HEYF+D+ FVP
Sbjct:  155 IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVMGTPNEETWPGVTSLPDFKSAFPKWPAKELAAVVPNLDASGLDLLDKMLRLDPSKRITARNALQHEYFKDIGFVP 294          
BLAST of CX043372 vs. ExPASy Swiss-Prot
Match: CDC2_VIGAC (Cell division control protein 2 homolog OS=Vigna aconitifolia GN=CDC2 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.375e-69
Identity = 119/140 (85.00%), Postives = 133/140 (95.00%), Query Frame = -3
Query:  288 IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFVP 707
            IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVN+RPLFPGDSEIDELFKIFR+LGTPNE+TWPGVT+LPDFKS FPKWP K+L TVV NL+ AG++LLS MLC+DPS+RITAR A+EHEYF+D++FVP
Sbjct:  155 IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNRRPLFPGDSEIDELFKIFRILGTPNEETWPGVTALPDFKSTFPKWPPKDLATVVPNLDAAGLNLLSSMLCLDPSKRITARIAVEHEYFKDIKFVP 294          
BLAST of CX043372 vs. ExPASy Swiss-Prot
Match: CDC22_MEDSA (Cell division control protein 2 homolog 2 OS=Medicago sativa GN=CDC2B PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.102e-69
Identity = 120/140 (85.71%), Postives = 131/140 (93.57%), Query Frame = -3
Query:  288 IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFVP 707
            IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEM+NQRPLFPGDSEIDELFKIFR+ GTPNE+TWPGVTSLPDFKSAFPKWP+K+L T V NLEPAG+DLLS    +DP+RRITAR ALEHEYF+D++FVP
Sbjct:  155 IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMINQRPLFPGDSEIDELFKIFRITGTPNEETWPGVTSLPDFKSAFPKWPAKDLATQVPNLEPAGLDLLSSTCRLDPTRRITARGALEHEYFKDIKFVP 294          
BLAST of CX043372 vs. ExPASy Swiss-Prot
Match: CDC2_VIGUN (Cell division control protein 2 homolog OS=Vigna unguiculata GN=CDC2 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.303e-67
Identity = 116/140 (82.86%), Postives = 132/140 (94.29%), Query Frame = -3
Query:  288 IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFVP 707
            IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGC+FAEMVN+RPLFPGDSEIDELFKIFR+LGTPNE+TWPGVT+LPDFKS FPKWP K+L T+V NL+ AG++LLS ML +DPS+RITAR A+EHEYF+D++FVP
Sbjct:  155 IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCLFAEMVNRRPLFPGDSEIDELFKIFRILGTPNEETWPGVTALPDFKSTFPKWPPKDLATMVPNLDAAGLNLLSSMLSLDPSKRITARIAVEHEYFKDIKFVP 294          
BLAST of CX043372 vs. ExPASy Swiss-Prot
Match: CDC2B_ANTMA (Cell division control protein 2 homolog B (Fragment) OS=Antirrhinum majus GN=CDC2B PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.550e-65
Identity = 113/136 (83.09%), Postives = 125/136 (91.91%), Query Frame = -3
Query:  300 IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 707
            IPVRTFTHEVVTLWYRAPE+LLGSRHYSTPVDVWSVGCIFAEMVNQ+PLFPGDSEIDEL KIFR++GTPNED WPGVTSLPDFKS+FPKWP KEL T+V NL   G+DLL KML +DPS+RITA+ ALEHEYF+D+
Sbjct:  142 IPVRTFTHEVVTLWYRAPEVLLGSRHYSTPVDVWSVGCIFAEMVNQKPLFPGDSEIDELHKIFRIIGTPNEDIWPGVTSLPDFKSSFPKWPPKELATIVPNLGATGLDLLCKMLQLDPSKRITAKKALEHEYFKDI 277          
BLAST of CX043372 vs. ExPASy Swiss-Prot
Match: CDKA1_ORYSJ (Cyclin-dependent kinase A-1 OS=Oryza sativa subsp. japonica GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.762e-64
Identity = 113/139 (81.29%), Postives = 129/139 (92.81%), Query Frame = -3
Query:  291 IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFV 707
            IPVRTFTHEVVTLWYRAPEILLGSR YSTPVD+WSVGCIFAEMVNQ+PLFPGDSEIDELFKIFRVLGTPNE +WPGV+SLPD+KSAFPKW +++L T+V  L+PAG+DLLSKML  +P++RITAR ALEHEYF+D+E V
Sbjct:  155 IPVRTFTHEVVTLWYRAPEILLGSRQYSTPVDMWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRVLGTPNEQSWPGVSSLPDYKSAFPKWQAQDLATIVPTLDPAGLDLLSKMLRYEPNKRITARQALEHEYFKDLEMV 293          
BLAST of CX043372 vs. ExPASy Swiss-Prot
Match: CDC2_MAIZE (Cell division control protein 2 homolog OS=Zea mays GN=CDC2 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.762e-64
Identity = 113/139 (81.29%), Postives = 129/139 (92.81%), Query Frame = -3
Query:  291 IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFV 707
            IPVRTFTHEVVTLWYRAPEILLG+R YSTPVDVWSVGCIFAEMVNQ+PLFPGDSEIDELFKIFR+LGTPNE +WPGV+ LPDFK+AFP+W +++L TVV NL+PAG+DLLSKML  +PS+RITAR ALEHEYF+D+E V
Sbjct:  155 IPVRTFTHEVVTLWYRAPEILLGARQYSTPVDVWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEQSWPGVSCLPDFKTAFPRWQAQDLATVVPNLDPAGLDLLSKMLRYEPSKRITARQALEHEYFKDLEVV 293          
BLAST of CX043372 vs. ExPASy Swiss-Prot
Match: CDKA2_ORYSJ (Cyclin-dependent kinase A-2 OS=Oryza sativa subsp. japonica GN=CDKA-2 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.322e-63
Identity = 110/137 (80.29%), Postives = 126/137 (91.97%), Query Frame = -3
Query:  297 IPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVE 707
            IPVRTFTHEVVTLWYRAPEILLG+RHYSTPVD+WSVGCIFAEMVNQ+PLFPGDSEIDELFKIF ++GTPNE+TWPGV SLPD+ S FPKWPS +L TVV  L+ +G+DLLSKML +DPS+RI AR+ALEHEYF+D+E
Sbjct:  154 IPVRTFTHEVVTLWYRAPEILLGARHYSTPVDMWSVGCIFAEMVNQKPLFPGDSEIDELFKIFSIMGTPNEETWPGVASLPDYISTFPKWPSVDLATVVPTLDSSGLDLLSKMLRLDPSKRINARAALEHEYFKDLE 290          
The following BLAST results are available for this feature:
BLAST of CX043372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDC21_MEDSA7.384e-7186.43Cell division control protein 2 homolog 1 (Fragmen... [more]
CDC2_CHERU9.644e-7187.86Cell division control protein 2 homolog OS=Chenopo... [more]
CDC2A_ANTMA1.819e-6986.43Cell division control protein 2 homolog A OS=Antir... [more]
CDC2_VIGAC2.375e-6985.00Cell division control protein 2 homolog OS=Vigna a... [more]
CDC22_MEDSA3.102e-6985.71Cell division control protein 2 homolog 2 OS=Medic... [more]
CDC2_VIGUN1.303e-6782.86Cell division control protein 2 homolog OS=Vigna u... [more]
CDC2B_ANTMA3.550e-6583.09Cell division control protein 2 homolog B (Fragmen... [more]
CDKA1_ORYSJ1.762e-6481.29Cyclin-dependent kinase A-1 OS=Oryza sativa subsp.... [more]
CDC2_MAIZE1.762e-6481.29Cell division control protein 2 homolog OS=Zea may... [more]
CDKA2_ORYSJ3.322e-6380.29Cyclin-dependent kinase A-2 OS=Oryza sativa subsp.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_10F05_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10F05-L10-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043372 ID=CX043372; Name=CX043372; organism=Citrus sinensis; type=EST; length=709bp
TTTTTTTTTTTTTTTTTGAGTAATCGAACAACAAATTCAATTTGGTGTAT
TGCATATCAAATATTTAAAAGAAAAACTGGCACAAGCATTTATCCACAAG
ATCAAGAAAGCCGCGAATACACGATTACAAACTAGGCAAATCCAGAGATG
ACTGTAAAAAGCCATTCCATGTAGTAAGACTTTTCAGTAAAACTGCAAGT
AAAGACAGTCGGCAAATTTCGCAAACAATCAAAACCAAAGGCTTCACAAT
AATGTCAACACTCTAATAGCATATACAACAGATATTAGGGTACAAATTCG
ACGTCCCTGAAGTATTCATGTTCTAGAGCACTTCTGGCAGTAATTCTTCT
GCTTGGATCCATGCAGAGCATTTTAGAAAGGAGATCAATGCCAGCTGGCT
CAAGATTTCGAACAACAGTCCCCAACTCCTTAGAAGGCCATTTAGGAAAG
GCAGATTTAAAGTCAGGCAATGAAGTCACTCCGGGCCATGTGTCCTCATT
AGGTGTTCCCAAGACTCTGAAGATCTTGAATAACTCATCAATCTCAGAGT
CTCCTGGAAACAATGGCCGCTGGTTCACCATCTCAGCAAATATACATCCC
ACCGACCACACATCAACTGGAGTAGAGTAATGGCGAGATCCTAGTAATAT
TTCAGGTGCTCTGTACCACAATGTCACCACCTCATGTGTAAATGTCCTAA
CAGGAATAC
back to top