EY664967

Overview
NameEY664967
Unique NameEY664967
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664967 vs. ExPASy Swiss-Prot
Match: RS33_ARATH (40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.090e-34
Identity = 70/88 (79.55%), Postives = 79/88 (89.77%), Query Frame = 1
Query:   34 VIVFGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPA 294
            VIV GKLRA RAKSMKFKDGYM+SSGQP  EYID+AVRHVLLRQGVLG+KVKIML+WD KGKQGP TPLPD+V IH P +++VY+APA
Sbjct:  136 VIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPA 223          
BLAST of EY664967 vs. ExPASy Swiss-Prot
Match: RS31_ARATH (40S ribosomal protein S3-1 OS=Arabidopsis thaliana GN=RPS3A PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.147e-32
Identity = 70/92 (76.09%), Postives = 77/92 (83.70%), Query Frame = 1
Query:   34 VIVFGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE-VYVAPATATS 306
            VIV GKLRA RAKSMKFKDGYM+SSGQP  EYID+AVRHVLLRQGVLGIKVKIML+WD  GK GP TPLPD+V IH  K++ VY APA A +
Sbjct:  136 VIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAPAQAAA 227          
BLAST of EY664967 vs. ExPASy Swiss-Prot
Match: RS32_ARATH (40S ribosomal protein S3-2 OS=Arabidopsis thaliana GN=RPS3B PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.337e-32
Identity = 69/88 (78.41%), Postives = 74/88 (84.09%), Query Frame = 1
Query:   34 VIVFGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPA 294
            VIV GKLRA RAKSMKFKDGYM+SSGQP  EYIDSAVRHVLLRQGVLGIKVK+ML+WD KG  GP TPLPD+V IH P +EE   APA
Sbjct:  136 VIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAPA 223          
BLAST of EY664967 vs. ExPASy Swiss-Prot
Match: RS3_ICTPU (40S ribosomal protein S3 OS=Ictalurus punctatus GN=rps3 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 9.403e-27
Identity = 63/91 (69.23%), Postives = 68/91 (74.73%), Query Frame = 1
Query:   34 VIVFGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 306
            V+V GKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   KEE  + P T  S
Sbjct:  136 VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEE--ILPTTPVS 224          
BLAST of EY664967 vs. ExPASy Swiss-Prot
Match: RS32_XENLA (40S ribosomal protein S3-B OS=Xenopus laevis GN=rps3-B PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.095e-26
Identity = 62/91 (68.13%), Postives = 68/91 (74.73%), Query Frame = 1
Query:   34 VIVFGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 306
            V+V GKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   K+E  + P T  S
Sbjct:  136 VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE--IVPTTPIS 224          
BLAST of EY664967 vs. ExPASy Swiss-Prot
Match: RS31_XENLA (40S ribosomal protein S3-A OS=Xenopus laevis GN=rps3-A PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 2.095e-26
Identity = 62/91 (68.13%), Postives = 68/91 (74.73%), Query Frame = 1
Query:   34 VIVFGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 306
            V+V GKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   K+E  + P T  S
Sbjct:  136 VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE--IVPTTPIS 224          
BLAST of EY664967 vs. ExPASy Swiss-Prot
Match: RS3_RAT (40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.736e-26
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   34 VIVFGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 279
            V+V GKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   K+E+
Sbjct:  136 VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEI 217          
BLAST of EY664967 vs. ExPASy Swiss-Prot
Match: RS3_MOUSE (40S ribosomal protein S3 OS=Mus musculus GN=Rps3 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.736e-26
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   34 VIVFGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 279
            V+V GKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   K+E+
Sbjct:  136 VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEI 217          
BLAST of EY664967 vs. ExPASy Swiss-Prot
Match: RS3_AMBME (40S ribosomal protein S3 OS=Ambystoma mexicanum GN=RPS3 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.736e-26
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   34 VIVFGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 279
            V+V GKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   K+E+
Sbjct:  136 VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLAWDPSGKIGPKKPLPDHVSIVEPKDEI 217          
BLAST of EY664967 vs. ExPASy Swiss-Prot
Match: RS3_PONAB (40S ribosomal protein S3 OS=Pongo abelii GN=RPS3 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.573e-26
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   34 VIVFGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 279
            V+V GKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   K+E+
Sbjct:  136 VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEI 217          
The following BLAST results are available for this feature:
BLAST of EY664967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RS33_ARATH2.090e-3479.5540S ribosomal protein S3-3 OS=Arabidopsis thaliana... [more]
RS31_ARATH1.147e-3276.0940S ribosomal protein S3-1 OS=Arabidopsis thaliana... [more]
RS32_ARATH3.337e-3278.4140S ribosomal protein S3-2 OS=Arabidopsis thaliana... [more]
RS3_ICTPU9.403e-2769.2340S ribosomal protein S3 OS=Ictalurus punctatus GN... [more]
RS32_XENLA2.095e-2668.1340S ribosomal protein S3-B OS=Xenopus laevis GN=rp... [more]
RS31_XENLA2.095e-2668.1340S ribosomal protein S3-A OS=Xenopus laevis GN=rp... [more]
RS3_RAT2.736e-2671.9540S ribosomal protein S3 OS=Rattus norvegicus GN=R... [more]
RS3_MOUSE2.736e-2671.9540S ribosomal protein S3 OS=Mus musculus GN=Rps3 P... [more]
RS3_AMBME2.736e-2671.9540S ribosomal protein S3 OS=Ambystoma mexicanum GN... [more]
RS3_PONAB3.573e-2671.9540S ribosomal protein S3 OS=Pongo abelii GN=RPS3 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-072-E05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664967 ID=EY664967; Name=EY664967; organism=Citrus sinensis; type=EST; length=457bp
CGGTCCGNATTCCAAGCCCGACCCACGCGTCCGGTTATTGTTTTTGGAAA
GCTCCGGGCTCAACGTGCCAAGTCCATGAAATTTAAAGATGGGTACATGA
TATCCTCAGGTCAACCTGTGAATGAATACATCGACTCAGCTGTAAGACAT
GTTCTTCTTAGACAGGGTGTGCTTGGTATCAAGGTGAAGATCATGCTTGA
ATGGGATCAAAAGGGCAAGCAAGGGCCAACAACACCTTTGCCTGATCTGG
TTACCATCCACCCTCTGAAGGAAGAAGTGTATGTTGCACCAGCGACGGCA
ACCAGTATTGAGCTTCCAGTAGCATAAACCGTGAGTTGAGTTGTGTCCAA
TGTCTGATGTAATGATTTAGTAATAGCTTTATGTTTTCTTTTTTCTTTTA
ATTATCTATGGAGGAGCAAGAGAATACTACTGGGTACTGTGCAAAAAAAA
AAAAAAA
back to top