CX672696
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 3.691e-49 Identity = 104/176 (59.09%), Postives = 119/176 (67.61%), Query Frame = -2 Query: 281 GAEIRKENLLNEHKPVENIPTPT-FKANMTSHKDGSF--NGTAAGCKLFGFXXXXXXXXXXXXXPGKRSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGTTDDTQSCLDQAPVIME 799 G E RK + NE N+ FK +M + GS ++GCKLFGF KR CTKVHKQGS VGRAIDLSRLNGY+DLL ELE LFNMEGLLRDP KGWRILYTDSEND+MVVGDDPWH+FCN V KIH+YT+EEVE DD +SCL+QA ++ME Sbjct: 598 GEETRKFDAQNEGGLPNNVTADLPFKIDMMGKQKGSELNMNASSGCKLFGFSLPVETPASKPQSSSKRICTKVHKQGSQVGRAIDLSRLNGYDDLLMELERLFNMEGLLRDPEKGWRILYTDSENDMMVVGDDPWHDFCNVVWKIHLYTKEEVE----NANDDNKSCLEQAALMME 769
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 3.040e-27 Identity = 52/93 (55.91%), Postives = 73/93 (78.49%), Query Frame = -2 Query: 329 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGT 607 RSC KVHKQG +GR++DL++ NGY +L++EL+ +F+ G L+ P K W ++YTD+E D+M+VGDDPW EFC+ V KI IYT+EEV++M GT Sbjct: 725 RSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGT 817
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.040e-27 Identity = 52/93 (55.91%), Postives = 73/93 (78.49%), Query Frame = -2 Query: 329 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGT 607 RSC KVHKQG +GR++DL++ NGY +L++EL+ +F+ G L+ P K W ++YTD+E D+M+VGDDPW EFC+ V KI IYT+EEV++M GT Sbjct: 725 RSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGT 817
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 3.040e-27 Identity = 56/93 (60.22%), Postives = 68/93 (73.12%), Query Frame = -2 Query: 329 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGT 607 RSCTKVHKQG +GR++DLS+ Y +L++EL+ LF G L P K W I+YTD END+M+VGDDPW EFC V KI IYT+EEV KM GT Sbjct: 733 RSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAPKKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKMNPGT 825
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.390e-26 Identity = 51/92 (55.43%), Postives = 71/92 (77.17%), Query Frame = -2 Query: 332 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIG 607 RSC KVHKQG +GR+IDL++ Y++L++EL+ +F+ G L +K W ++YTD+E D+M+VGDDPW+EFCN V KI IYT+EEV+KM G Sbjct: 713 RSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKNWMVVYTDNEGDMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNPG 804
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2) HSP 1 Score: 118.242 bits (295), Expect = 5.734e-26 Identity = 53/90 (58.89%), Postives = 70/90 (77.78%), Query Frame = -2 Query: 338 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMT 607 RSCTKVH QGS VGRAIDL+R Y DL +LE +F+++G L + K W+++YTD E+D+M+VGDDPW+EFC V KI IYT EEV+K++ Sbjct: 542 RSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKKWQVVYTDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLS 631
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 7.489e-26 Identity = 51/89 (57.30%), Postives = 71/89 (79.78%), Query Frame = -2 Query: 341 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKM 607 RSCTKVHKQG +GR++DLS+ + Y++L +EL+ +F +G L K W+I+YTD+E D+M+VGDDPW EFC+ V KI+IYT+EEV+KM Sbjct: 692 RSCTKVHKQGVALGRSVDLSKFSNYDELKAELDKMFEFDGELVSSNKNWQIVYTDNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKM 780
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 8.280e-25 Identity = 50/90 (55.56%), Postives = 71/90 (78.89%), Query Frame = -2 Query: 338 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMT 607 RSCTKV QG VGRA+DL+RL+GY+DL +LE +F+++G L K W+++YTD E+D+M+VGDDPW EFC+ V +I+IYT EE +++T Sbjct: 548 RSCTKVIMQGMAVGRAVDLTRLHGYDDLRCKLEEMFDIQGELSASLKKWKVVYTDDEDDMMLVGDDPWPEFCSMVKRIYIYTYEEAKQLT 637
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 7.009e-24 Identity = 49/87 (56.32%), Postives = 68/87 (78.16%), Query Frame = -2 Query: 347 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVE 607 RSCTKV QG VGRA+DL++LNGY DL S+LE +F+++G L K W+++YTD E+D+M+VGDDPW EFC+ V +I+IY+ EE + Sbjct: 547 RSCTKVIMQGMAVGRAVDLTKLNGYGDLRSKLEEMFDIQGDLCPTLKRWQVVYTDDEDDMMLVGDDPWDEFCSMVKRIYIYSYEEAK 633
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFI_ARATH (Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.322e-22 Identity = 51/92 (55.43%), Postives = 70/92 (76.09%), Query Frame = -2 Query: 332 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIG 607 RS TKV QG VGRA+DL+ L GYN+L+ ++E LF+++G LR + W I++TD E D+M+VGDDPW EFCN V +I I+++EEV+KMT G Sbjct: 523 RSRTKVQMQGVPVGRAVDLNALKGYNELIDDIEKLFDIKGELRSRNQ-WEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKMTPG 613 The following BLAST results are available for this feature:
BLAST of CX672696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
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Sequences
The
following sequences are available for this feature:
EST sequence >CX672696 ID=CX672696; Name=CX672696; organism=Citrus sinensis; type=EST; length=851bpback to top |