CX672696

Overview
NameCX672696
Unique NameCX672696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.691e-49
Identity = 104/176 (59.09%), Postives = 119/176 (67.61%), Query Frame = -2
Query:  281 GAEIRKENLLNEHKPVENIPTPT-FKANMTSHKDGSF--NGTAAGCKLFGFXXXXXXXXXXXXXPGKRSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGTTDDTQSCLDQAPVIME 799
            G E RK +  NE     N+     FK +M   + GS      ++GCKLFGF               KR CTKVHKQGS VGRAIDLSRLNGY+DLL ELE LFNMEGLLRDP KGWRILYTDSEND+MVVGDDPWH+FCN V KIH+YT+EEVE       DD +SCL+QA ++ME
Sbjct:  598 GEETRKFDAQNEGGLPNNVTADLPFKIDMMGKQKGSELNMNASSGCKLFGFSLPVETPASKPQSSSKRICTKVHKQGSQVGRAIDLSRLNGYDDLLMELERLFNMEGLLRDPEKGWRILYTDSENDMMVVGDDPWHDFCNVVWKIHLYTKEEVE----NANDDNKSCLEQAALMME 769          
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 3.040e-27
Identity = 52/93 (55.91%), Postives = 73/93 (78.49%), Query Frame = -2
Query:  329 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGT 607
            RSC KVHKQG  +GR++DL++ NGY +L++EL+ +F+  G L+ P K W ++YTD+E D+M+VGDDPW EFC+ V KI IYT+EEV++M  GT
Sbjct:  725 RSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGT 817          
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.040e-27
Identity = 52/93 (55.91%), Postives = 73/93 (78.49%), Query Frame = -2
Query:  329 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGT 607
            RSC KVHKQG  +GR++DL++ NGY +L++EL+ +F+  G L+ P K W ++YTD+E D+M+VGDDPW EFC+ V KI IYT+EEV++M  GT
Sbjct:  725 RSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGT 817          
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 3.040e-27
Identity = 56/93 (60.22%), Postives = 68/93 (73.12%), Query Frame = -2
Query:  329 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGT 607
            RSCTKVHKQG  +GR++DLS+   Y +L++EL+ LF   G L  P K W I+YTD END+M+VGDDPW EFC  V KI IYT+EEV KM  GT
Sbjct:  733 RSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAPKKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKMNPGT 825          
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.390e-26
Identity = 51/92 (55.43%), Postives = 71/92 (77.17%), Query Frame = -2
Query:  332 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIG 607
            RSC KVHKQG  +GR+IDL++   Y++L++EL+ +F+  G L   +K W ++YTD+E D+M+VGDDPW+EFCN V KI IYT+EEV+KM  G
Sbjct:  713 RSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKNWMVVYTDNEGDMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNPG 804          
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.734e-26
Identity = 53/90 (58.89%), Postives = 70/90 (77.78%), Query Frame = -2
Query:  338 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMT 607
            RSCTKVH QGS VGRAIDL+R   Y DL  +LE +F+++G L +  K W+++YTD E+D+M+VGDDPW+EFC  V KI IYT EEV+K++
Sbjct:  542 RSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKKWQVVYTDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLS 631          
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.489e-26
Identity = 51/89 (57.30%), Postives = 71/89 (79.78%), Query Frame = -2
Query:  341 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKM 607
            RSCTKVHKQG  +GR++DLS+ + Y++L +EL+ +F  +G L    K W+I+YTD+E D+M+VGDDPW EFC+ V KI+IYT+EEV+KM
Sbjct:  692 RSCTKVHKQGVALGRSVDLSKFSNYDELKAELDKMFEFDGELVSSNKNWQIVYTDNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKM 780          
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.280e-25
Identity = 50/90 (55.56%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  338 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMT 607
            RSCTKV  QG  VGRA+DL+RL+GY+DL  +LE +F+++G L    K W+++YTD E+D+M+VGDDPW EFC+ V +I+IYT EE +++T
Sbjct:  548 RSCTKVIMQGMAVGRAVDLTRLHGYDDLRCKLEEMFDIQGELSASLKKWKVVYTDDEDDMMLVGDDPWPEFCSMVKRIYIYTYEEAKQLT 637          
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.009e-24
Identity = 49/87 (56.32%), Postives = 68/87 (78.16%), Query Frame = -2
Query:  347 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVE 607
            RSCTKV  QG  VGRA+DL++LNGY DL S+LE +F+++G L    K W+++YTD E+D+M+VGDDPW EFC+ V +I+IY+ EE +
Sbjct:  547 RSCTKVIMQGMAVGRAVDLTKLNGYGDLRSKLEEMFDIQGDLCPTLKRWQVVYTDDEDDMMLVGDDPWDEFCSMVKRIYIYSYEEAK 633          
BLAST of CX672696 vs. ExPASy Swiss-Prot
Match: ARFI_ARATH (Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.322e-22
Identity = 51/92 (55.43%), Postives = 70/92 (76.09%), Query Frame = -2
Query:  332 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIG 607
            RS TKV  QG  VGRA+DL+ L GYN+L+ ++E LF+++G LR   + W I++TD E D+M+VGDDPW EFCN V +I I+++EEV+KMT G
Sbjct:  523 RSRTKVQMQGVPVGRAVDLNALKGYNELIDDIEKLFDIKGELRSRNQ-WEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKMTPG 613          
The following BLAST results are available for this feature:
BLAST of CX672696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
ARFD_ARATH3.691e-4959.09Auxin response factor 4 OS=Arabidopsis thaliana GN... [more]
ARFW_ORYSJ3.040e-2755.91Auxin response factor 23 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSI3.040e-2755.91Auxin response factor 23 OS=Oryza sativa subsp. in... [more]
ARFB_ARATH3.040e-2760.22Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
ARFX_ORYSJ4.390e-2655.43Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]
ARFA_ARATH5.734e-2658.89Auxin response factor 1 OS=Arabidopsis thaliana GN... [more]
ARFD_ORYSJ7.489e-2657.30Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]
ARFG_ORYSJ8.280e-2555.56Auxin response factor 7 OS=Oryza sativa subsp. jap... [more]
ARFI_ORYSJ7.009e-2456.32Auxin response factor 9 OS=Oryza sativa subsp. jap... [more]
ARFI_ARATH1.322e-2255.43Auxin response factor 9 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_18F07_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-18F07-K14-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672696 ID=CX672696; Name=CX672696; organism=Citrus sinensis; type=EST; length=851bp
TTTTTTTTCACGCCAAAACATACTGTGACTGAATTATTGATGCTAGCATG
TTGCCGGTAGGCAGAAAGCACAAGTTGAAAACAGTTTACAACTGTGATTG
TCGATAATAGAAGGCCAAATAGGAATGCGCACAGAGGCAAACATAAGACC
CCTAATTAGGTTCATATTTATTACGTTGTACATACAAACATATCATCAAG
CACGTCTAGGAACTTCAAACCCTTACTACCGTCGGAGAAGAGTCTGGCTG
GCTGACTGATGAAGACTTCGAAACTGAAACTTCCATTATTACCGGTGCTT
GATCCAAGCAGCTTTGAGTATCATCGGTGGTTCCAATGGTCATCTTCTCC
ACTTCTTCTTGCGTATAGATATGGATCTTGGACACCTCATTACAGAATTC
ATGCCAAGGATCATCCCCAACAACCATCACATCATTCTCACTGTCGGTGT
ACAAGATCCGCCATCCTTTAGCAGGATCTCGTAAAAGGCCTTCCATGTTA
AATAAGTGCTCTAGTTCACTTAGCAGGTCATTGTAGCCATTCAGTCTCGA
GAGATCAATAGCTCTTCCAACCAAGCTGCCTTGCTTGTGAACCTTTGTAC
AACTCCTCTTACCAGGGCTTTGAGAGCTTGGAGTAGGTGTTTCAGAAGTC
AGAGAGAACCCAAAAAGCTTACATCCAGCTGCTGTCCCATTAAAGCTTCC
ATCTTTGTGACTCGTCATATTTGCCTTGAAAGTGGGTGTAGGGATATTTT
CCACAGGCTTATGCTCGTTCAGAAGATTTTCTTTTCTAATTTCGGCTCCA
ATTGCTGGCATCTGGATAGAAGATGAGTTGAGTTTAACATTTTCTCTCTG
G
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