CX672688

Overview
NameCX672688
Unique NameCX672688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX672688 vs. ExPASy Swiss-Prot
Match: DEF_NELNU (Defensin-like protein OS=Nelumbo nucifera PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.519e-11
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = -3 
Query:  338 MERSVRLFSTXXXXXXXL-ASEMGLRAAEARICESQSHRFKGPCVSKSNCAAVCQTE 505
            MER +RLFS+       + A+EMG + AEAR CESQSHRFKG C+S +NCA+VCQTE
Sbjct:    1 MERGMRLFSSLVLVLLLVTATEMGPKVAEARTCESQSHRFKGACLSDTNCASVCQTE 57
The following BLAST results are available for this feature:
BLAST of CX672688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DEF_NELNU1.519e-1161.40Defensin-like protein OS=Nelumbo nucifera PE=3 SV=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_18F02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-18F02-K4-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672688 ID=CX672688; Name=CX672688; organism=Citrus sinensis; type=EST; length=906bp
TTCGATTTATTTGTAAGTGCCATCACAGATCCTGAGATCAACCATGAGGA
AACTATTGATCAAGGATCTAACATGTAAATACAAGTACTTGAGATATACA
AAAGGTTACAAATATAAATAGAAACCGCAACCACACCTCACACATGAAAG
CTCTAGCAACTCAACAACTGCAAATACGCCAAGATAATACAACAAACAAA
ATCAAGTATCCGGCCACAGGGATAAGGGATCCTTGTTATTATTGTAAAGA
AACTAGCTTCTTCATAAAGTGTTTTTAACATCTTTTAGTGCAAAAGCATC
GACGACGGAATCCGCGGCAATGGCCACCGTGGAACCCTTCAGTTTGGCAA
ACAGCAGCACAGTTGCTCTTACTCACACATGGCCCCTTGAACCGGTGACT
CTGAGACTCGCATATCCTAGCTTCTGCCGCCCTCAGCCCCATTTCACTGG
CAAGAAGCAGCAGCACAAGTAGAACAGTTGAAAATAAACGCACTGAGCGC
TCCATCTTTAGTCTTCAAGGCCAAAATAATCAAGAGAGATTAGATGAGAG
AGCAAAGGAGAAAGAGAGAGTCATGAAATAAAACCTCAGGCTCCCAAATG
AAGGACTATGCAGTCCATCTGGAGTTGGTGTAGTCACATAACCTAAATTA
GTTTGATTGACTTTGGAACCCGTATGGGTTGGAGCTCTTTCAGATGTTAA
TAGAGGAGAATTAACGTCAGACTGAAATGGAGAATTTTCTGCAACCAAAA
AGTCATCTAGCAGAATATCTGCACAGAATGCTGCTACTACGTCATGAAAC
AAGATAAAAGGATAATACTGATAAAATGGCACTAAAGACTGACCAAGTAA
CCACAATAGAACAGAAAATCAAAAGAGACTCATCATGGAAGTCCAATATG
CCAATA
back to top