CX672679

Overview
NameCX672679
Unique NameCX672679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672679 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 8.759e-103
Identity = 179/204 (87.75%), Postives = 185/204 (90.69%), Query Frame = 2
Query:  197 LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 808
            LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLGA GAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK LGGSGDPAY            KDEKSMK+ KLKE+KNGRLAMLAILGYF+Q LVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct:   70 LPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273          
BLAST of CX672679 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 7.415e-102
Identity = 177/205 (86.34%), Postives = 185/205 (90.24%), Query Frame = 2
Query:  194 SLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 808
            SLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLGAVGAIAPE LGK GLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK  GGSG+PAY            KDEKS+K+ KLKEVKNGRLAMLAILGYF+QGLVTGVGPYQNLLDH+ADPVNNNVLTSLKFH
Sbjct:   71 SLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSLKFH 275          
BLAST of CX672679 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.168e-30
Identity = 83/200 (41.50%), Postives = 108/200 (54.00%), Query Frame = 2
Query:  194 SLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 790
            SL GD GFDPLGL+ DPE        KW    E++NGR+AMLG  G + PE+  K G+I       W+       AG   Y+A   TLFV+E  L  + E RR+QD  NPGS+ +     F++Y    G+  Y              E      K KE+ NGRLAMLA LG+ VQ  VTG GP++NLL HL+DP +N ++
Sbjct:   70 SLAGDNGFDPLGLAEDPENL------KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII---NVPEWYD------AGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPKGEVGYPGGIFNPLNFAPTQEA-----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIV 247          
BLAST of CX672679 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.602e-30
Identity = 81/203 (39.90%), Postives = 110/203 (54.19%), Query Frame = 2
Query:  194 SLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 799
            SLPGD GFDPLGL+ DPE        +W    E++NGR+AMLG  G + PE+    G+I       W+       AG   Y+A   TLFV+E  L  + E RR+QD  NPGS+ +     F++Y   +G+  Y              E      K KE+ NGRLAMLA LG+ +Q  VTG GP+ NLL H++DP +N ++ +L
Sbjct:   69 SLPGDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII---NVPKWYA------AGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGGIFNPLNFAPTLEA-----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 249          
BLAST of CX672679 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.571e-30
Identity = 83/210 (39.52%), Postives = 107/210 (50.95%), Query Frame = 2
Query:  194 SLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLG----------------GSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 772
            SLPGD+GFDPLGL SDPE        KW A  E+++ R+AMLGA G   PE L K G++      +W+       AG   Y+ D  TLFV+E+ L+G+AE RR+ D   PG +         K  G                GSG PA                  +K+ + KE+KNGRLAMLA++G + Q + TG GP  NL  HLADP
Sbjct:   81 SLPGDFGFDPLGLGSDPESL------KWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVL---NTPSWYT------AGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPA-----------------KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CX672679 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.093e-28
Identity = 80/210 (38.10%), Postives = 107/210 (50.95%), Query Frame = 2
Query:  194 SLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLG----------------GSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 772
            SLPGD+GFDPLGL SDPE        +W    E+++ R+AMLGA G   PE+L K G++      +W+       AG   Y+ D  TLF++E+ L+G+AE RR+ D   PG +         K  G                GSG PA                  +K+ + KE+KNGRLAMLA++G + Q + TG GP  NL  HLADP
Sbjct:   81 SLPGDFGFDPLGLASDPESL------RWNQQAELVHCRWAMLGAAGIFIPELLTKIGIL---NTPSWYT------AGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPA-----------------KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CX672679 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.930e-25
Identity = 83/206 (40.29%), Postives = 111/206 (53.88%), Query Frame = 2
Query:  200 PGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 784
            PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++ +++ LMGF E  R       G +G     G +K Y GG+ DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct:   72 PGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR----VGGGPLGE----GLDKVYPGGAFDPL----------GLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251          
BLAST of CX672679 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.930e-25
Identity = 83/206 (40.29%), Postives = 111/206 (53.88%), Query Frame = 2
Query:  200 PGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 784
            PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++ +++ LMGF E  R       G +G     G +K Y GG+ DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct:   72 PGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR----VGGGPLGE----GLDKVYPGGAFDPL----------GLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251          
BLAST of CX672679 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.292e-25
Identity = 83/206 (40.29%), Postives = 111/206 (53.88%), Query Frame = 2
Query:  200 PGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 784
            PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R       G +G     G +K Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct:   74 PGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGALGCVFPEILSKNGVTFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYR----VGGGPLGE----GLDKIYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANN 253          
BLAST of CX672679 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.299e-25
Identity = 83/206 (40.29%), Postives = 111/206 (53.88%), Query Frame = 2
Query:  200 PGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 784
            PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R       G +G     G +K Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct:   46 PGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGALGCVFPEILSKNGVTFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYR----VGGGPLGE----GLDKIYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANN 225          
The following BLAST results are available for this feature:
BLAST of CX672679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB13_SOLLC8.759e-10387.75Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA7.415e-10286.34Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB24_ARATH1.168e-3041.50Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA2.602e-3039.90Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB12_PETHY7.571e-3039.52Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC1.093e-2838.10Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_ORYSJ1.930e-2540.29Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.930e-2540.29Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB26_PETSP3.292e-2540.29Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC4.299e-2540.29Chlorophyll a-b binding protein 5, chloroplastic (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_18E09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-18E09-I18-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672679 ID=CX672679; Name=CX672679; organism=Citrus sinensis; type=EST; length=935bp
CAAGGAGCAGACAGACCGTTGTGGTTTGCATCCAAACAAAGCCTTTCATA
CTTGGATGGCAGGTAACTTATCTATGCTTTTTGGCATGAGCAATGATATT
TGGACAGAAAAATTTGATAGCGCGCTTGTTTCTGTCGGCGCTCTGTCAGC
ACTTCTGCATTTTTGCATCATTTAGATGTACATTTACTTTTGCAGCCTCC
CCGGAGACTATGGATTCGACCCACTTGGTCTCTCAGACCCTGAAGGCACA
GGAGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCGAGGTCATCAACGG
TCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCACCGGAGATTCTTG
GCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGCCTGGTTCCAAACC
GGTGTGATCCCCCCAGCGGGAACATACAACTACTGGGCAGACCCTTACAC
ACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCCGAGCACCGGAGAT
TCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGCAATACTTCCTCGGA
TTCGAGAAATACTTGGGAGGTTCCGGCGATCCGGCTTACCCTGGAGGACC
TCTATTCAACCCTCTGGGTCTTGGGAAAGATGAGAAGTCAATGAAGGATT
TCAAGCTCAAGGAAGTGAAGAATGGAAGATTGGCAATGTTGGCAATCTTG
GGTTACTTTGTTCAAGGTCTTGTTACAGGAGTTGGGCCTTACCAGAACCT
ATTGGATCACTTGGCTGATCCTGTCAACAACAATGTTTTGACTAGCCTCA
AGTTTCACTGAGAGAGAAATTTCTTGTTCATTGCTTGGAATTATATATTC
CAAGCCTTGTCATCCCCCACTCTGTTCTATTCTACTTTCCCCATTGTAAA
TTATCTATGTGAAAAGTGAATGTAACTTGGCGGAA
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