CX053667

Overview
NameCX053667
Unique NameCX053667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length447
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053667 vs. ExPASy Swiss-Prot
Match: NLTP_VIGUN (Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.989e-20
Identity = 42/93 (45.16%), Postives = 61/93 (65.59%), Query Frame = -3
Query:  164 MASALLLATVVFSREL----PVPEAVTCNPSQLTPCLPAFTWTAPPSTVCCNSLRQQRPCLCTYLRNPLYKQYYDSPNYRRIAVTCGVPFPRC 430
            M  +++ A VV +  L    PV EAVTCNP++L+ C+PA T  + PS+ CC+ L+ Q PCLC Y++NP  KQY +SP  +++   CGV +P C
Sbjct:    7 MKMSVVCAVVVVALFLIDVGPVAEAVTCNPTELSSCVPAITGGSKPSSTCCSKLKVQEPCLCNYIKNPSLKQYVNSPGAKKVLSNCGVTYPNC 99          
BLAST of CX053667 vs. ExPASy Swiss-Prot
Match: NLTP2_PRUAR (Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.965e-19
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = -3
Query:  164 VTCNPSQLTPCLPAFTWTAPPSTVCCNSLRQQRPCLCTYLRNPLYKQYYDSPNYRRIAVTCGVPFPRC 367
            VTC+P QL+PCL      AP  T CC  LR+QRPCLC YL+NP  +QY +SPN R++A  CGVP P+C
Sbjct:    1 VTCSPVQLSPCLGPINSGAPSPTTCCQKLREQRPCLCGYLKNPSLRQYVNSPNARKLASNCGVPVPQC 68          
BLAST of CX053667 vs. ExPASy Swiss-Prot
Match: NLTP2_MAIZE (Probable non-specific lipid-transfer protein 2 OS=Zea mays PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.752e-12
Identity = 35/68 (51.47%), Postives = 41/68 (60.29%), Query Frame = -3
Query:  164 CNPSQLTPCL-PA-FTWTAPPSTVCCNSLRQQRPCLCTYLRNPLYKQYYDSPNYRRIAVTCGVPFPRC 361
            CNP+QLTPC  PA F    PP+  CC  LR Q+ CLC Y R+P Y  Y  SPN  R+   C +P PRC
Sbjct:    4 CNPAQLTPCAGPALFGGAVPPA--CCAQLRAQQGCLCGYARSPNYGSYIRSPNAARLFAICNLPMPRC 69          
BLAST of CX053667 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP-2 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.694e-12
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = -3
Query:  164 TCNPSQLTPCLPAFTWTAPPSTVCCNSLRQQRPCLCTYLRNPLYKQYYDSPNYRRIAVTCGVPFPRC 364
            +CN  QLT C  A    A P+  CC+SLR Q+ C C + ++P Y +Y +SPN R+   +CG+  P C
Sbjct:   29 SCNAGQLTVCAGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of CX053667 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSJ (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. japonica GN=LTP-2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.131e-12
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = -3
Query:  164 CNPSQLTPCLPAFTWTAPPSTVCCNSLRQQRPCLCTYLRNPLYKQYYDSPNYRRIAVTCGVPFPRC 361
            CN  QLT C  A    A P+  CC+SLR Q+ C C + ++P Y +Y +SPN R+   +CG+  P C
Sbjct:   30 CNAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of CX053667 vs. ExPASy Swiss-Prot
Match: NLTP2_HORVU (Probable non-specific lipid-transfer protein OS=Hordeum vulgare GN=LTP2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 29/87 (33.33%), Postives = 42/87 (48.28%), Query Frame = -3
Query:  164 SALLLATVVFSRELPVPEAVTCNPSQLTPCLPAFTWTAPPSTVCCNSLRQQRPCLCTYLRNPLYKQYYDSPNYRRIAVTCGVPFPRC 424
            + +++  V  +          C P+QL  C  A      PS  CC +LR Q+ CLC Y+++P Y  Y  SP+ R     CG+P P C
Sbjct:   16 AVMMVMVVTLAAGADAGAGAACEPAQLAVCASAILGGTKPSGECCGNLRAQQGCLCQYVKDPNYGHYVSSPHARDTLNLCGIPVPHC 102          
BLAST of CX053667 vs. ExPASy Swiss-Prot
Match: NLT2P_WHEAT (Non-specific lipid-transfer protein 2P OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.779e-11
Identity = 29/66 (43.94%), Postives = 36/66 (54.55%), Query Frame = -3
Query:  164 CNPSQLTPCLPAFTWTAPPSTVCCNSLRQQRPCLCTYLRNPLYKQYYDSPNYRRIAVTCGVPFPRC 361
            C  SQL  C  A    A PS  CC +LR Q+PC C Y ++P Y QY  SP+ R    +CG+  P C
Sbjct:    2 CQASQLAVCASAILSGAKPSGECCGNLRAQQPCFCQYAKDPTYGQYIRSPHARDTLQSCGLAVPHC 67          
The following BLAST results are available for this feature:
BLAST of CX053667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NLTP_VIGUN7.989e-2045.16Probable non-specific lipid-transfer protein AKCS9... [more]
NLTP2_PRUAR3.965e-1957.35Non-specific lipid-transfer protein 2 OS=Prunus ar... [more]
NLTP2_MAIZE2.752e-1251.47Probable non-specific lipid-transfer protein 2 OS=... [more]
NLTPX_ORYSI4.694e-1241.79Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLTPX_ORYSJ6.131e-1242.42Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLTP2_HORVU3.043e-1133.33Probable non-specific lipid-transfer protein OS=Ho... [more]
NLT2P_WHEAT6.779e-1143.94Non-specific lipid-transfer protein 2P OS=Triticum... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_7D10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7D10-H20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053667 ID=CX053667; Name=CX053667; organism=Citrus sinensis; type=EST; length=447bp
CGAATTGGGGTACCGNGGCCCCCCCTTTTTTTTTTAGGAACATAACATAC
GACATAAATTTTTTTATTATTCATTCGTTTTGATTATTCATTATTGATTA
TTCATTATTGATTATTCATTATTGATTATCATTACACTCATTGTTAAGCA
AGAAGCAAGATTAACACCTAGGAAATGGAACGCCGCAGGTTACAGCAATC
CTTCTGTAATTAGGAGAATCGTAATATTGCTTGTAGAGTGGATTCCTAAG
GTAAGTGCAAAGGCAGGGCCTCTGCTGCCTCAAGCTGTTGCAGCACACGG
TTGATGGCGGCGCCGTCCATGTGAATGCCGGCAGGCACGGAGTCAGCTGC
GAGGGATTGCAAGTCACTGCCTCAGGCACGGGCAGTTCCCTAGAAAACAC
TACAGTAGCCAGCAGCAGTGCTGACGCCATGAAGATGAAAGCACCAG
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