FC871819

Overview
NameFC871819
Unique NameFC871819
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871819 vs. ExPASy Swiss-Prot
Match: LECA_MACPO (Agglutinin alpha chain OS=Maclura pomifera PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 4.229e-16
Identity = 39/75 (52.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    4 FPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLS 228
            FP E+++ VSG+   V   G  VIRSLTFK+NK+T+GP+GV  GTPF+  ++ GL+VGFKG  G+++D    YLS
Sbjct:   60 FPSEYIVEVSGYVGKVE--GYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLS 132          
BLAST of FC871819 vs. ExPASy Swiss-Prot
Match: LECA_ARTIN (Agglutinin alpha chain OS=Artocarpus integer PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.230e-15
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    4 FPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLS 228
            FP E+++ VSG+   V   G  V+RSLTFK+NK+T+GP+GV  GTPF   ++ GL+VGFKG  G+++D    YLS
Sbjct:   60 FPSEYIMEVSGYTGNV--SGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLS 132          
BLAST of FC871819 vs. ExPASy Swiss-Prot
Match: LECA_CASCR (Agglutinin OS=Castanea crenata PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.376e-13
Identity = 38/79 (48.10%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    4 FPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRT-FGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKKQ 237
            +PEE+L S+SG    +      +IRS++FK+NK T +GP+GV  G PF++S +GG++VGF GRSG  +DAIG Y+   Q
Sbjct:   74 WPEEYLTSISGTVADLWQ--HIIIRSISFKTNKGTEYGPYGVVTGQPFSYSTEGGVIVGFHGRSGTLLDAIGAYVKIPQ 150          

HSP 2 Score: 72.7886 bits (177), Expect = 9.749e-13
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 1
Query:   10 EEFLISVSGHYCPVVYGGS-PVIRSLTFKSNKRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYL 225
            +EFLI ++G Y PV   GS   +RS+TF +NK  +GP+G E G  FT S+  G VVGF GRSG Y+DAIG ++
Sbjct:  234 KEFLIRIAGFYGPVEGSGSFKALRSITFYTNKAKYGPYGDEIGQAFTSSVAPGRVVGFHGRSGAYLDAIGVHM 306          
BLAST of FC871819 vs. ExPASy Swiss-Prot
Match: LEC_PARPC (Mannose/glucose-specific lectin (Fragment) OS=Parkia platycephala PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.350e-11
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 1
Query:   13 EFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKK 234
            E L S+SG Y    Y G  V+ SL+F +N    GPFG+  GT F+  ++G LV GF G+SG+Y+D+IG Y+  +
Sbjct:  224 EHLKSISGTYGN--YKGFEVVTSLSFITNVTKHGPFGIASGTSFSIPIEGSLVTGFHGKSGYYLDSIGIYVKPR 295          
The following BLAST results are available for this feature:
BLAST of FC871819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LECA_MACPO4.229e-1652.00Agglutinin alpha chain OS=Maclura pomifera PE=1 SV... [more]
LECA_ARTIN1.230e-1550.67Agglutinin alpha chain OS=Artocarpus integer PE=1 ... [more]
LECA_CASCR4.376e-1348.10Agglutinin OS=Castanea crenata PE=1 SV=1[more]
LEC_PARPC5.350e-1144.59Mannose/glucose-specific lectin (Fragment) OS=Park... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK1DB09FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1DB09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871819 ID=FC871819; Name=FC871819; organism=Citrus sinensis; type=EST; length=496bp
CGATTCCCAGAAGAATTCTTGATCAGTGTTAGCGGCCACTACTGTCCTGT
CGTCTATGGTGGCAGCCCTGTGATCAGATCCCTAACATTTAAGAGCAACA
AAAGAACCTTCGGTCCTTTCGGAGTTGAAGAAGGAACCCCATTTACTTTC
TCAATGGATGGAGGACTGGTTGTTGGTTTTAAGGGAAGGAGTGGCTGGTA
TGTCGATGCAATCGGTTTCTATTTGTCTAAGAAACAATCATCAAAGCTCC
TTCAAAGGGTCCAAAAAGGGCTTCAAAGGCTTGCAAGCACAACTGCGAAG
TCGTCTGCCACCAAGGATGGTGGAAAAGCCCATTAGATAGAGGCTAATAC
CTCGACAATAAAGTTGATACTGCTGATGTATTATTACGAACAAATACTTA
GAATTATGAGCGCTCCTGCTAGAGTTTTATGTATTGGGTCCTCGAATTTT
CTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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