CX672564

Overview
NameCX672564
Unique NameCX672564
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672564 vs. ExPASy Swiss-Prot
Match: TTC33_DANRE (Tetratricopeptide repeat protein 33 OS=Danio rerio GN=ttc33 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.803e-18
Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = -3
Query:  471 QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFDRALAIKP 752
            +G  LAE  +  EAL KW+ A+ L PE+AVL+E K+QVL+ LG+ + A+++A  AT L   W EAW TLGRAQL+ GE + A+ SF  AL + P
Sbjct:   66 EGALLAEQDRNWEALKKWDEAVQLTPEDAVLYEMKSQVLITLGEVFLAVQSAEMATRLRPIWWEAWQTLGRAQLSLGEVELAVRSFQVALHLHP 159          
BLAST of CX672564 vs. ExPASy Swiss-Prot
Match: TTC33_XENLA (Tetratricopeptide repeat protein 33 OS=Xenopus laevis GN=ttc33 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.119e-16
Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = -3
Query:  459 QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFDRALAIKPDSEE 752
            +G  LAEDG+ +EAL KW+ A+ L P +A L+E KAQVL+ + + + A++AA  A +    + EAW TLGRAQL+ GE   AI SF   L I P + E
Sbjct:   65 EGGLLAEDGRQKEALTKWDEAIQLTPGDAALYEMKAQVLMGVHEIFPAVQAAETAVQRNPHFVEAWQTLGRAQLSLGEITMAIRSFQIGLHICPANTE 162          
BLAST of CX672564 vs. ExPASy Swiss-Prot
Match: TTC33_MOUSE (Tetratricopeptide repeat protein 33 OS=Mus musculus GN=Ttc33 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.044e-15
Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = -3
Query:  459 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFDRALAIKPDSEE 779
            KQ +   + +G  LAE+ +++EA+ KW+ AL L P +A L+E K+QVLL L + + A+ AA  A +      EAW TLGRAQL  GE   AI SF  AL I P + E
Sbjct:   56 KQRSQQLKDEGAQLAENKRYKEAIQKWDEALQLTPGDATLYEMKSQVLLSLHEMFPAVHAAEMAVKRNPHSWEAWQTLGRAQLGLGEIVLAIRSFQIALHIYPMNPE 162          
BLAST of CX672564 vs. ExPASy Swiss-Prot
Match: TTC33_HUMAN (Tetratricopeptide repeat protein 33 OS=Homo sapiens GN=TTC33 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.947e-15
Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = -3
Query:  459 QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFDRALAIKPDSEE 752
            +G +LAE+ ++REA+ KW+ AL L P +A L+E K+QVL+ L + + A+ AA  A +      E+W TLGRAQL  GE   AI SF  AL I P + E
Sbjct:   65 EGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYPMNPE 162          
The following BLAST results are available for this feature:
BLAST of CX672564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TTC33_DANRE9.803e-1850.00Tetratricopeptide repeat protein 33 OS=Danio rerio... [more]
TTC33_XENLA4.119e-1646.94Tetratricopeptide repeat protein 33 OS=Xenopus lae... [more]
TTC33_MOUSE2.044e-1544.86Tetratricopeptide repeat protein 33 OS=Mus musculu... [more]
TTC33_HUMAN5.947e-1545.92Tetratricopeptide repeat protein 33 OS=Homo sapien... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_17G04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17G04-M7-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672564 ID=CX672564; Name=CX672564; organism=Citrus sinensis; type=EST; length=853bp
TTTTTTTTGTTTTTCTTATGTTCAATGTATATAATGCAAGCAAAACACTC
CATAATACTGATATGCTGTATTATGCAATTTACAGGCTCACACTTTTTTG
TCAAACAAAAACATGGGAAATCATCCTTTACATGAAATTGAGTAGAAGTA
AAGGATTGTAACTTTCCTAGTCAGTGGTGAAGATATTTTCCTCTTAGATT
AAAGCAGACCTTGATAAGCAAATTCTTGGTGTGGAGAATATTTTCAGGGT
AAATTATCACAAACTTTCACAGCTAAGTTCTCCAGAGGCCAAGGATTCTG
ATGCCAGATAACTTTTCCTAATCATCTTTCTCGCAGCTTCAGGAGACTTC
TGTCTTGTCCCCAACTACAAAACGGTTTGCATCATTACTCAAGCCAGACA
AATGAAGATGCTTCCTCCTCTTGACAAGATGTAATGCAGTCTGTCTGTCA
TCTCGAGCCTCCTCAGAATCAGGCTTGATAGCTAATGCCCTGTCAAAGCT
TTCGATTGCTTTATCAGGCTCCCCAAAGTTTAACTGTGCCCTACCTAGAG
TTATCCATGCCTCTGCCCATGATTGTTCCAATTCAGTAGCTCGAGTAGCT
GCCTTCAATGCATTCCATGCATCCCCAAGTTCTAGTAAAACTTGTGCTTT
CTGCTCATGCAAGACCGCATTTTCAGGCCTCAAATTAAGAGCAGCCTCCC
ACTTTCCAAGTGCTTCCCGGAATTTTCCATCCTCGGCAAGGTTATTGCCT
TGGGCTTCGAATGATAGGGCAAGTTGTTTAGCGTCGAAGGGGTCTTGATG
TTCGTTATTATCATCGTTCTTTTCGAGCTCTGCACCACTTAATCCGTGCT
CTT
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