CX672561

Overview
NameCX672561
Unique NameCX672561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX672561 vs. ExPASy Swiss-Prot
Match: BH068_ARATH (Transcription factor bHLH68 OS=Arabidopsis thaliana GN=BHLH68 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 44/60 (73.33%), Postives = 48/60 (80.00%), Query Frame = -2 
Query:  363 DNCMKRKGTS----DHQESQEEVKKSLRSRGLCLVPVSCTLQVGSDNGADYWAPALGGGG 530
            D CMKR+G S    D+Q + EE KK LRSRGLCLVP+SCTLQVGSDNGADYWAPALG  G
Sbjct:  346 DQCMKRRGASSSSTDNQNASEEPKKDLRSRGLCLVPISCTLQVGSDNGADYWAPALGSAG 405
[Close]
BLAST of CX672561 vs. ExPASy Swiss-Prot
Match: BH133_ARATH (Transcription factor bHLH133 OS=Arabidopsis thaliana GN=BHLH133 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.941e-14
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = -2 
Query:  372 CMKRK---GTSDHQESQ--EEVKKSLRSRGLCLVPVSCTLQVGSDNGADYWAPALG 524
            CMKR     ++D+Q+S   EE  K LRSRGLCLVP+SCTLQVGSDNGADYWAPA G
Sbjct:  303 CMKRGVSLSSTDNQKSNPNEEPMKDLRSRGLCLVPISCTLQVGSDNGADYWAPAFG 358
The following BLAST results are available for this feature:
BLAST of CX672561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BH068_ARATH1.206e-1873.33Transcription factor bHLH68 OS=Arabidopsis thalian... [more]
BH133_ARATH8.941e-1469.64Transcription factor bHLH133 OS=Arabidopsis thalia... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_17G02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17G02-M3-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672561 ID=CX672561; Name=CX672561; organism=Citrus sinensis; type=EST; length=741bp
TTTTTTTTTTTTTTTTTAAAAAGTTTAATTGATGATCATACTAGAACTGC
ATAATGCATATACATTAAATAAGCAATTAATTAATGTTGTAGCTGCAGCT
AGCTCGCTGGTTAAATTAAGGAGAGAAAACAAATTAAATAAAGCTTAATT
GTAAACTAGAGAGTTTTATGGACCTCTAAGTCCCAGCTAGAGAGCACACT
TATAACTTAAGCAAACACAAAGAAAAGATTTTGTATAGCATCATGAGCAA
TCAGCCTTATATTTTTAGCAGAGTGACTGCTCATGATGTTATATCGATTC
ATCCTCTCAATGCCTATATAAGTGTGCTGCCGTTAATAACTCTATTCATC
CATCTACCGGAGACCTCCCCCGCCGAGAGCCGGTGCCCAATAATCTGCCC
CGTTGTCGCTCCCAACTTGCAGCGTGCATGATACTGGAACCAGACACAGC
CCTCTGCTCCTCAAGCTTTTCTTTACTTCTTCTTGTGATTCCTGATGATC
AGAAGTTCCTTTCCTCTTCATGCAGTTGTCATTCAACAGCTATATAATCA
AATAAAGAAACAGAATCAAATAATTATTCACACTTTAATTGAATTGTACG
CGTCAAGACAACAAGCATGTATCCCCTATATTCCGAGTGCTATACACACA
CACACAAACACACTAAGAGAATCGTAATCAACACTTTAATAATTAATCTA
TCTTAATTAACGAGAATTAAAGTAACTATATATAAAGCTGA
back to top