CX672549

Overview
NameCX672549
Unique NameCX672549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672549 vs. ExPASy Swiss-Prot
Match: TAF5_SCHPO (Transcription initiation factor TFIID subunit 5 OS=Schizosaccharomyces pombe GN=taf5 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.052e-23
Identity = 60/203 (29.56%), Postives = 110/203 (54.19%), Query Frame = 2
Query:   77 VATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS---TKMLGIINERINFQVSPGQPSSISDDAEIV 676
            V  YL KKG+S  E  L+ E   +  S       I                E+ P  Y   Y+ LR W  SSL+LYK EL  +L+P+F+H +++L+++ H + A+ F+  F++DH  +H  D++ L+ +  PSH+ E   A   R +K  +   + +++LLL +L +  S   + ++ +IN+ I+  + PG+P ++ ++A+++
Sbjct:   16 VLDYLAKKGYSRTEAMLRLEASGSGVSVEEKLKSI----------------EETPDAYTHTYTILRDWVDSSLELYKAELHRILFPIFVHSYLNLLSQDHYEAAKQFYELFKDDHTDLHDFDVKNLKSLSLPSHVAEDRTAQQYRQNKYQLHFSRITFDLLLHFLFENVSNGGSIIIKLINQHIDIHIVPGRP-TVLENAKVI 201          
BLAST of CX672549 vs. ExPASy Swiss-Prot
Match: TAF5_HUMAN (Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 1.244e-21
Identity = 57/194 (29.38%), Postives = 106/194 (54.64%), Query Frame = 2
Query:  173 IDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISD-DAEIVTLIGSNQDAANQINQKEVHWGLLED 751
            + + + P++S     +++  D P  Y++ YS L+ +   SLD ++ EL  + YP+F+H +++LV   H  EA++FF  F  D E  +  DL+ L  +    H++  E     R SK  ++I + SY+LL ++L + Q+ ++  I+ E +   +  G P S    DA + +L G   +A  + N+ +V +GLL++
Sbjct:  190 VAVEDQPDVSAVLSAYNQQGD-PTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAG---EAKREANKSKVFFGLLKE 379          
BLAST of CX672549 vs. ExPASy Swiss-Prot
Match: TAF5_MOUSE (Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.625e-21
Identity = 57/194 (29.38%), Postives = 106/194 (54.64%), Query Frame = 2
Query:  173 IDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISD-DAEIVTLIGSNQDAANQINQKEVHWGLLED 751
            + + + P++S     +++  D P  Y++ YS L+ +   SLD ++ EL  + YP+F+H +++LV   H  EA++FF  F  D E  +  DL+ L  +    H++  E     R SK  ++I + SY+LL ++L + Q+ ++  I+ E +   +  G P S    DA + +L G   +A  + N+ +V +GLL++
Sbjct:  191 VAVEDQPDVSAVLSAYNQQGD-PTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRIYRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAG---EAKREANKSKVFFGLLKE 380          
BLAST of CX672549 vs. ExPASy Swiss-Prot
Match: TAF5_ENCCU (Transcription initiation factor TFIID subunit 5 OS=Encephalitozoon cuniculi GN=TAF5 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.347e-20
Identity = 47/167 (28.14%), Postives = 94/167 (56.29%), Query Frame = 2
Query:  251 QDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLED 751
            +  Y  L++W   SLDL+K++LL +LYP+FIH + DL+ +    EA+ FF  +R DH      ++++ E + +  H+ E  FA++ ++SK ++ + +Y+++LL+ +L +   T +L I+N+ ++ +V  G  S         +++ +  D    +  +E    +L D
Sbjct:   20 ETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDH-YNKSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILNQHLDIKVYVGPKSEERPQGIETSVVDAEIDLTTFLVSRECEDAILGD 185          
BLAST of CX672549 vs. ExPASy Swiss-Prot
Match: TAF73_SCHPO (Transcription initiation factor TFIID subunit taf73 OS=Schizosaccharomyces pombe GN=taf73 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.550e-19
Identity = 64/200 (32.00%), Postives = 104/200 (52.00%), Query Frame = 2
Query:   71 EFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQ---STKMLGIINERINFQVSPGQPSSISD 661
            + V  YL KKG+S  E  L+ EI    SS    P       E   +    SE+      Y   Y  LR W   +LDLYK +L  VLYP+F+H ++DL+ K   + A  FF +FR +HE++H  D++ L  +   S +EE+E A   R +K  I   + +++LL+Q+L + +   S  ++ ++N+ I+ +++  Q     D
Sbjct:   17 KIVLDYLFKKGYSRTEAMLRLEI----SSVGAIP------EEQQDWHIGASET------YVQVYILLRDWIDGTLDLYKPKLQKVLYPIFVHSYLDLLQKNDPEMAIYFFESFRIEHEVLHGYDIRALAQLKIASDVEEIEIAQLYRKNKYRINFTRSTFDLLVQFLFENEVNGSGIIIRLLNQYIDIKITMPQVEGKED 200          
BLAST of CX672549 vs. ExPASy Swiss-Prot
Match: TAF5_YEAST (Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae GN=TAF5 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.424e-17
Identity = 62/216 (28.70%), Postives = 105/216 (48.61%), Query Frame = 2
Query:   77 VATYLKKKGFSEAENALQAEIQRNKSSNN-----------------------------TNPIDILN--DPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS---TKMLGIINERIN 622
            V  YL KKG+   E  L+AE  R  +  N                             +NP ++ +  D E         E  + P  Y   YS L++W  SSL++YK EL +++YP+FI+ F++LVAK  +  AR FF+ F  D +  H  ++ +L  V S  H++E E A + +  K  I + + +  LLL +L++ +S   + ++ +IN+ ++
Sbjct:   64 VLEYLNKKGYHRTEAMLRAESGRTLTPQNKQSPANTKTGKFPEQSSIPPNPGKTAKPISNPTNLSSKRDAEGGIVSSGRLEGLNAPENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNPVY-ARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGSLIISVINQHLD 278          
BLAST of CX672549 vs. ExPASy Swiss-Prot
Match: TAF5_DROME (Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster GN=Taf5 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.629e-13
Identity = 47/187 (25.13%), Postives = 94/187 (50.27%), Query Frame = 2
Query:  194 ELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSN-QDAANQINQKEVHWGLLED 751
            EL+KF     +       Y+  Y +LR++   SLD+YKHEL  VLYP+ +  +  ++A G  ++A+ F   ++ D +  ++  L  L  +  P  L E +   ++   K  I++ + S+ L  +++   +   +  I+++ ++F    G      +  + V   GS+  +A  Q N+  V++GLL++
Sbjct:  101 ELAKFI---DDDSFDAQHYEQAYKELRTFVEDSLDIYKHELSMVLYPILVQIYFKILASGLREKAKEFIEKYKCDLDGYYIEGLFNLLLLSKPEELLENDLVVAMEQDKFVIRMSRDSHSLFKRHIQDRRQEVVADIVSKYLHFDTYEGM---ARNKLQCVATAGSHLGEAKRQDNKMRVYYGLLKE 281          
The following BLAST results are available for this feature:
BLAST of CX672549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TAF5_SCHPO5.052e-2329.56Transcription initiation factor TFIID subunit 5 OS... [more]
TAF5_HUMAN1.244e-2129.38Transcription initiation factor TFIID subunit 5 OS... [more]
TAF5_MOUSE1.625e-2129.38Transcription initiation factor TFIID subunit 5 OS... [more]
TAF5_ENCCU2.347e-2028.14Transcription initiation factor TFIID subunit 5 OS... [more]
TAF73_SCHPO7.550e-1932.00Transcription initiation factor TFIID subunit taf7... [more]
TAF5_YEAST1.424e-1728.70Transcription initiation factor TFIID subunit 5 OS... [more]
TAF5_DROME1.629e-1325.13Transcription initiation factor TFIID subunit 5 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_17F06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17F06-K11-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672549 ID=CX672549; Name=CX672549; organism=Citrus sinensis; type=EST; length=766bp
GAGAGCATCATCAACACTGCAGGAGAAAGAAGAAGAAGAAGAAGAGAGAA
TGGACGAGCTGCAAGTAGTGGAATTCGTAGCAACGTACTTGAAGAAGAAA
GGATTCAGTGAAGCCGAAAACGCATTGCAAGCTGAAATTCAACGAAACAA
GAGCAGTAACAACACCAATCCAATCGACATCCTCAACGACCCCGAACTCT
CCAAGTTCTTTCGCACCTTCTCCGAATCAGAAGATGGTCCAGCTCGTTAC
CAGGATGAATATAGCAAGCTTAGGTCATGGACTTATAGCTCCCTGGATCT
CTATAAGCATGAGTTGCTTCATGTGCTTTATCCAGTCTTCATCCATTGTT
TCATGGATCTGGTGGCAAAAGGCCACATCCAAGAGGCTAGAACATTTTTC
AATAACTTTCGTGAAGACCATGAAATGATGCACTTACGAGATCTTCAGAA
GTTGGAAGGTGTTCTTTCGCCCTCTCATCTGGAGGAGATGGAATTTGCTC
ATTCTTTAAGGCACAGCAAAGTCAACATTAAGATATGTCAGTATTCATAT
GAGCTTCTGCTTCAGTATCTACACAAGACACAATCCACAAAAATGCTTGG
GATTATCAATGAACGCATTAACTTCCAAGTTTCTCCTGGACAGCCCAGCT
CAATTTCTGATGATGCTGAAATTGTTACCCTTATTGGAAGCAATCAAGAT
GCAGCCAACCAGATAAATCAGAAAGAAGTACATTGGGGGTTGCTTGAAGA
TTCTTTAGAAAATCGC
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