CX672517

Overview
NameCX672517
Unique NameCX672517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672517 vs. ExPASy Swiss-Prot
Match: HAT5_ARATH (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.909e-15
Identity = 55/143 (38.46%), Postives = 78/143 (54.55%), Query Frame = -3
Query:  475 PRQVAIWFQNRPARWKTKQLEKDYDVLQNSYNSLKADYDNLFXXXXXXXXXXXXLTDKLQVKEKESKNTELPVVNKQEPPQISEPVADSAASEGKVCKASVVACKQED---ISSAKSDIFDSDSPHYTDGVHSSLLETCDSSY 894
            PRQVA+WFQNR ARWKTKQLE+DYD+L+++Y+ L ++YD++             LT+KLQ K++ +     P     EP Q+ +PV  +AA           A K ED     S  S + D D+P         LL++CDS +
Sbjct:  106 PRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSLTEKLQGKQETANE---PPGQVPEPNQL-DPVYINAA-----------AIKTEDRLSSGSVGSAVLDDDAP--------QLLDSCDSYF 225          
BLAST of CX672517 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSJ (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.645e-13
Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = -3
Query:  532 PRQVAIWFQNRPARWKTKQLEKDYDVLQNSYNSLKADYDNLFXXXXXXXXXXXXLTDKLQVKEKESKNTELPVVN----------KQEPPQISEPVADSAASEGKVCKASVVACKQE-DISSAKSDIFDSDS 894
            PRQVA+WFQNR ARWKTKQLE+D+D L+ S+++L+AD+D L             LT+KLQ KE  ++ +    V+          K   P   EP  + AA+  +  +   V  +      S  S + D+D+
Sbjct:  115 PRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKLQEKETTTEGSAGAAVDVPGLPAAADVKVAVPDAEEPALEEAAAAFEEQQEQQVKAEDRLSTGSGGSAVVDTDA 246          
BLAST of CX672517 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSI (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.645e-13
Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = -3
Query:  532 PRQVAIWFQNRPARWKTKQLEKDYDVLQNSYNSLKADYDNLFXXXXXXXXXXXXLTDKLQVKEKESKNTELPVVN----------KQEPPQISEPVADSAASEGKVCKASVVACKQE-DISSAKSDIFDSDS 894
            PRQVA+WFQNR ARWKTKQLE+D+D L+ S+++L+AD+D L             LT+KLQ KE  ++ +    V+          K   P   EP  + AA+  +  +   V  +      S  S + D+D+
Sbjct:  117 PRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKLQEKETTTEGSAGAAVDVPGLPAAADVKVAVPDAEEPALEEAAAAFEEQQEQQVKAEDRLSTGSGGSAVVDTDA 248          
BLAST of CX672517 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSJ (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. japonica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.760e-12
Identity = 40/101 (39.60%), Postives = 53/101 (52.48%), Query Frame = -3
Query:  607 PRQVAIWFQNRPARWKTKQLEKDYDVLQNSYNSLKADYDNLFXXXXXXXXXXXXLTDKLQVKEKES-----KNTELPVVNKQEPPQISEPVADSAASEGKV 894
            PRQVA+WFQNR ARWKTKQLE+DY  L+ SY++L+AD+D L             L  KL  ++  +     K  E P  +  +PP    P   S +    V
Sbjct:   81 PRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKLGDEDAAASFSSVKEEEDPAASDADPPATGAPQGSSESDSSAV 181          
BLAST of CX672517 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSI (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. indica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.760e-12
Identity = 40/101 (39.60%), Postives = 53/101 (52.48%), Query Frame = -3
Query:  607 PRQVAIWFQNRPARWKTKQLEKDYDVLQNSYNSLKADYDNLFXXXXXXXXXXXXLTDKLQVKEKES-----KNTELPVVNKQEPPQISEPVADSAASEGKV 894
            PRQVA+WFQNR ARWKTKQLE+DY  L+ SY++L+AD+D L             L  KL  ++  +     K  E P  +  +PP    P   S +    V
Sbjct:   81 PRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKLGDEDAAASFSSVKEEEDPAASDADPPATGAPQGSSESDSSAV 181          
BLAST of CX672517 vs. ExPASy Swiss-Prot
Match: ATHB6_ARATH (Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana GN=ATHB-6 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.494e-11
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = -3
Query:  619 PRQVAIWFQNRPARWKTKQLEKDYDVLQNSYNSLKADYDNLFXXXXXXXXXXXXLTDKLQ---VKEKESKN-----TELPVVNKQEPPQISEPVADSAAS 894
            PRQVA+WFQNR ARWKTKQLEKDY VL+  Y+SL+ ++D+L             L  KL     +E+E +N     TE  +  K+E   + E + ++ +S
Sbjct:  100 PRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTKLNGGGGEEEEEENNAAVTTESDISVKEEEVSLPEKITEAPSS 199          
BLAST of CX672517 vs. ExPASy Swiss-Prot
Match: ATB16_ARATH (Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.678e-11
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = -3
Query:  628 PRQVAIWFQNRPARWKTKQLEKDYDVLQNSYNSLKADYDNLFXXXXXXXXXXXXLTDKLQVKEKESKNTELPVVNKQEPPQISEPVADS 894
            PRQVA+WFQNR ARWKTKQLEKDY VL+  Y+SL+ ++D+L             +  K+  +E  + N  +    K+E    ++ +  S
Sbjct:   97 PRQVAVWFQNRRARWKTKQLEKDYGVLKGQYDSLRHNFDSLRRDNDSLLQEISKIKAKVNGEEDNNNNKAITEGVKEEEVHKTDSIPSS 185          
BLAST of CX672517 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSJ (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. japonica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.685e-11
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = -3
Query:  772 PRQVAIWFQNRPARWKTKQLEKDYDVLQNSYNSLKADYDNL 894
            PRQVA+WFQNR ARWKTKQLE+DY  L++SY+SL+ D+D L
Sbjct:   89 PRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDAL 129          
BLAST of CX672517 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSI (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. indica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.685e-11
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = -3
Query:  772 PRQVAIWFQNRPARWKTKQLEKDYDVLQNSYNSLKADYDNL 894
            PRQVA+WFQNR ARWKTKQLE+DY  L++SY+SL+ D+D L
Sbjct:   89 PRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDAL 129          
The following BLAST results are available for this feature:
BLAST of CX672517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
HAT5_ARATH2.909e-1538.46Homeobox-leucine zipper protein HAT5 OS=Arabidopsi... [more]
HOX16_ORYSJ4.645e-1335.61Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]
HOX16_ORYSI4.645e-1335.61Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]
HOX20_ORYSJ8.760e-1239.60Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
HOX20_ORYSI8.760e-1239.60Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
ATHB6_ARATH1.494e-1141.00Homeobox-leucine zipper protein ATHB-6 OS=Arabidop... [more]
ATB16_ARATH5.678e-1139.33Homeobox-leucine zipper protein ATHB-16 OS=Arabido... [more]
HOX4_ORYSJ9.685e-1170.73Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
HOX4_ORYSI9.685e-1170.73Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_17E01_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17E01-I1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672517 ID=CX672517; Name=CX672517; organism=Citrus sinensis; type=EST; length=896bp
TTTTTTTTTATCCAAATAATTTTTTTTTTCAAATAAAAGATATTATTTAA
TTACATTCTGAACAAGAAGTTCCATTCAACACTCAAGAAACTCCTACAAG
AACAAAAATTACAAACGGGGCAAAGCCACCATTTTTCTCTTTCAACAGCA
ATCAAAATCCACCACCAATTTTGCATTAGGGTGCCATTGATTGAATTTAT
TTCTTATTCCTAACTTACAATTCGAACATGCTTTTTAAAAAAAACAAAGA
AAGACACAGGCAAGATAAACTTATATACCAAGGATTCATGATCAGAAGGA
CCATGACCAAAAGGCGTGATCTTCAATGGGGAATCCGAAGTTACAGGAAT
TCGTGGGCGGGTCCGAGTATTCAGTTTCTTCAAGCTTTGGGAAGACGTAT
GGAGGCAACAGGACATTCTTGCTCAAGCTATCATCTTCATCTTGTGATAA
ATCGGACTGTTCAGGTTCAAAAACATAAGATGAATCACAAGTTTCTAGGA
GTGAAGAGTGAACCCCATCCGTGTAATGTGGGCTATCCGAATCAAATATG
TCACTTTTGGCTGAACTTATATCTTCTTGCTTACAAGCCACAACTGAGGC
TTTGCATACTTTACCCTCTGAGGCAGCAGAATCAGCAACAGGTTCTGAAA
TTTGTGGTGGTTCTTGTTTGTTTACTACAGGCAATTCTGTGTTTTTACTC
TCTTTCTCTTTGACCTGCAGCTTGTCTGTGAGCTTAAGAACCTCAGCTTT
TAGCTTTTCTTTCTCCTTGAAGAGATTGTCATAATCGGCCTTAAGGCTAT
TATAGCTGTTTTGCAATACATCGTAATCCTTCTCGAGCTGTTTAGTCTTC
CAACGAGCCGGGCGGTTTTGGAACCAAATCGCAACCTGTCTAGGCT
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