CX672497

Overview
NameCX672497
Unique NameCX672497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672497 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.155e-23
Identity = 67/149 (44.97%), Postives = 84/149 (56.38%), Query Frame = 2
Query:    2 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 373
            V AVAV++ + G  GT+ FS EG GPTTV G++SGL PG H   +H  G+ +N  +STGP F PAG +           G L NITV  +G A+F I  K IPL+G NSVIGR +VVH  P             + + G  VA G IGL
Sbjct:    2 VKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHGDPDDLGKGGHELSKSTGNAGGRVACGIIGL 150          
BLAST of CX672497 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.508e-23
Identity = 65/149 (43.62%), Postives = 85/149 (57.05%), Query Frame = 2
Query:    2 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 373
            V AV V++ + G  GTV F+ EGSGPTTV G++SGL PG H   +H  G+ +N  +STGP F PAG +           G L NITV  +G ATF I  + IPL+G NS++GR +VVH+ P             + + G  VA G IGL
Sbjct:    2 VKAVVVLSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVACGVIGL 150          
BLAST of CX672497 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.573e-23
Identity = 61/128 (47.66%), Postives = 79/128 (61.72%), Query Frame = 2
Query:    2 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSPSPDPGDG 349
            V AVAV+TG+ G +GTV F+ EG GPTT+ GSLSGL PG H   +H  G+ +N  +STGP F PAG +           G L N+TV  +G   F +  + IPL+G NSV+GR +VVH+  S D G G
Sbjct:    2 VKAVAVLTGSEGVQGTVFFAQEGEGPTTITGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDGNRHAGDLGNVTVGEDGTVNFTVTDSQIPLTGLNSVVGRAVVVHAD-SDDLGKG 128          
BLAST of CX672497 vs. ExPASy Swiss-Prot
Match: SODC_PEA (Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=SODCC PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.277e-22
Identity = 65/149 (43.62%), Postives = 84/149 (56.38%), Query Frame = 2
Query:    2 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 373
            V AVAV++ +N   GT++FS EG+GPTTV G+L+GL PG H   IH  G+ +N  ISTGP F P G +           G L NI V  +G  +F I    IPL+GTNS+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    2 VKAVAVLSNSNEVSGTINFSQEGNGPTTVTGTLAGLKPGLHGFHIHALGDTTNGCISTGPHFNPNGKEHGAPEDETRHAGDLGNINVGDDGTVSFTITDNHIPLTGTNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of CX672497 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.277e-22
Identity = 64/149 (42.95%), Postives = 83/149 (55.70%), Query Frame = 2
Query:    2 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 373
            V AVAV+  + G KGT+ F+ EG GPTTV GS+SGL PG H   +H  G+ +N  +STGP F PAG +           G L N+TV  +G     I  + IPLSG+NS+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    2 VKAVAVLGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of CX672497 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.178e-22
Identity = 58/128 (45.31%), Postives = 77/128 (60.16%), Query Frame = 2
Query:    2 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDG 349
            V  VAV++ + G  GT+ F+ EG GPTTV G++SGL PG H   +H  G+ +N  +STGP F PAG +           G L N+TV  +G A F I  K IPL+G +S+IGR +VVH+ P  D G G
Sbjct:    2 VKGVAVLSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHADPD-DLGKG 128          
BLAST of CX672497 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.081e-21
Identity = 62/147 (42.18%), Postives = 82/147 (55.78%), Query Frame = 2
Query:    8 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 373
            AV V++ + G  GTV F+ EG GPTTV G++SGL PG H   +H  G+ +N  +STGP + P G +           G L NITV  +G ATF I  + IPLSG NS++GR +VVH+ P             + + G  VA G IGL
Sbjct:    4 AVVVLSSSEGVSGTVYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of CX672497 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.081e-21
Identity = 61/149 (40.94%), Postives = 83/149 (55.70%), Query Frame = 2
Query:    2 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 373
            V AVAV+  + G KGT+ FS EG GPT+V GS+SGL PG H   +H  G+ +N  +STGP F P G +           G L NIT  ++G+A   +  + IPL+G +S+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    2 VKAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of CX672497 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.844e-21
Identity = 60/149 (40.27%), Postives = 83/149 (55.70%), Query Frame = 2
Query:    2 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 373
            V AVAV+  + G KGT+ F+ EG GPTTV GS+SGL PG H   +H  G+ +N  +STGP + PA  +           G L N+T  ++G+A   +  + IPL+G NS+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    2 VKAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 150          
BLAST of CX672497 vs. ExPASy Swiss-Prot
Match: SODC2_SOLLC (Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopersicum GN=SODCC.5 PE=3 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 3.145e-21
Identity = 57/128 (44.53%), Postives = 77/128 (60.16%), Query Frame = 2
Query:    2 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDG 349
            V AVAV+  + G  GT+ F+ +G+ PTTV G++SGL PG H   +H  G+ +N  +STGP + PAG +           G L NITV  +G A+F I  K IPL+G  S+IGR +VVH+ P  D G G
Sbjct:    2 VKAVAVLNSSEGVSGTILFTQDGAAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPD-DLGKG 128          
The following BLAST results are available for this feature:
BLAST of CX672497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
SODC_IPOBA1.155e-2344.97Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC1_MESCR1.508e-2343.62Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC_ZANAE2.573e-2347.66Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]
SODC_PEA1.277e-2243.62Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=S... [more]
SODC_ANACO1.277e-2242.95Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC_PAUKA2.178e-2245.31Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC_SPIOL1.081e-2142.18Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC2_ORYSJ1.081e-2140.94Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]
SODC4_MAIZE1.844e-2140.27Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC2_SOLLC3.145e-2144.53Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopers... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_17C12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17C12-E23-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672497 ID=CX672497; Name=CX672497; organism=Citrus sinensis; type=EST; length=618bp
GGTGAATGCAGTTGCAGTTATTACTGGAACTAACGGTCGCAAGGGAACTG
TTTCCTTTAGCGTTGAAGGAAGTGGTCCAACAACTGTGAAAGGAAGCCTC
TCTGGTTTGCCGCCTGGTGATCACGCACTCATTATTCACACTTACGGAAA
CATAAGCAATGATTGGATATCAACTGGACCCCCTTTTAAACCTGCTGGAG
CTGACGGTTTTTTAGAAAACATCACTGTTACTAGTGAGGGTATTGCTACT
TTTGAAATTTACAAGACGATTCCTCTTTCTGGAACAAATTCCGTTATTGG
AAGGGGTCTTGTAGTCCACTCAAGTCCCAGTCCAGATCCTGGTGATGGAG
TAGCTTGGGGCACCATCGGTCTCAGTTATTGAAGGGGCTTCTCTCCATAC
CATAATAAATACATTTGACATGATGTCGAATGTGTCTTGAATACTTAATA
AAATAAATAATATGTTGTACGAATCAAAATCTGGCTATAATAAAATAAAT
AAAAGCCAGGGCATGTCTGTAATATGTTGTACCTTGTAGAATGTGGCCGT
AAATAAAATAAATAAAAGTCCAGGCGTGCTGTGCACTGTCCTTAAGACTA
TTTCTACTCCTTAAAAAA
back to top