CX672493
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RT13_ARATH (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 1.618e-49 Identity = 91/153 (59.48%), Postives = 120/153 (78.43%), Query Frame = -2 Query: 94 MISLRNSVGMLSNVSRQLIQTISFHGLRVQGLRVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 552 M+ LR S L ++S+ L++ ++FHGLRVQG+RVGN E+PN+K L+T LQ VYGIGR ++HQ+LC L I NKL ++LTG EL LREEV ++ G++LRR + ++++RLV++ CYRG RH GLPCRGQRTSTNART+KGK VAI GKKK R Sbjct: 1 MLGLRRSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCHLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQRTSTNARTKKGKAVAIAGKKKAPR 153
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RT13_SOYBN (Small ribosomal subunit protein S13, mitochondrial OS=Glycine max GN=RSP13 PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.329e-35 Identity = 73/139 (52.52%), Postives = 103/139 (74.10%), Query Frame = -2 Query: 127 SVGMLSNVSRQLIQTISFHGLRVQGLRVGNT---EIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKR 534 S +LS+V+ +L Q +S HG+RVQ + +G EIP++KRL +LQ+++GIGRS+A I+ +L + NK K+L+ EL S+RE +S+YL G DL++C++ DV RLV IQCYRGIRH LPCRGQRT TNARTR+ ++ Sbjct: 4 SARILSDVTLRLRQNLSVHGVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDLSKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQRTHTNARTRRSRK 142
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RR13_ARATH (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 6.598e-35 Identity = 72/127 (56.69%), Postives = 95/127 (74.80%), Query Frame = -2 Query: 94 LRVQGLRVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 474 L ++ RVG EIP +KR+E SLQ+++GIGR+RA QIL DL + NK+TK++ EL LR+EVS+Y+ DLRR ++RL +IQCYRG+RH QGLPCRGQRT N RT KGK++AI GKKK ++ Sbjct: 43 LSIRCARVGGVEIPANKRIEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_ACICJ (30S ribosomal protein S13 OS=Acidiphilium cryptum (strain JF-5) GN=rpsM PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 8.637e-27 Identity = 63/123 (51.22%), Postives = 86/123 (69.92%), Query Frame = -2 Query: 94 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 456 R+ IP++KR+ SL+++YGIG ++A +I L IG +K +L+ E+ +RE + R Y DLRR + +++RLVD+ CYRG+RH +GLP RGQRT TNARTRKGK VAI GKKK TR Sbjct: 3 RIAGVNIPSNKRVLISLRYIYGIGPAKAREICQSLEIGEDKRVNQLSEDEIMKIRELIDRDYRVEGDLRREVAMNIKRLVDLGCYRGLRHRKGLPVRGQRTHTNARTRKGKAVAIAGKKKATR 125
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_HERA2 (30S ribosomal protein S13 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rpsM PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.473e-26 Identity = 65/124 (52.42%), Postives = 88/124 (70.97%), Query Frame = -2 Query: 94 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKR-VAIPGKKKPTR 456 R+ +IP +KR+E SL ++YGIGR+ + +IL NI N K+LT E+ LRE + + T E DLRR ++ +++RL+DI CYRGIRH +GLP RGQRT TNARTR+GK+ AI GKKK T+ Sbjct: 3 RISGVDIPRNKRVEISLTYIYGIGRTTSTEILARTNINPNVRVKDLTEDEVIRLREIIDQDYTVEGDLRRAVQLNIKRLMDIGCYRGIRHRKGLPLRGQRTKTNARTRRGKKGAAIGGKKKATK 126
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_GEOLS (30S ribosomal protein S13 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rpsM PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.473e-26 Identity = 59/120 (49.17%), Postives = 84/120 (70.00%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNI-GNKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ ++P +KR+E +L ++YGIGR+ A IL +I G+ T +LT E+ LREE+ + + E DLRR + +++RL+D+ CYRG+RH +GLPCRGQRT TNARTRKG + GKKK Sbjct: 3 RIAGIDLPKNKRIEIALTYIYGIGRTTAKNILVATSIDGSTRTDKLTEAEIGKLREEIDKNVKVEGDLRREVSMNIKRLMDLGCYRGLRHRKGLPCRGQRTKTNARTRKGPARTVAGKKK 122
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_AZOSB (30S ribosomal protein S13 OS=Azoarcus sp. (strain BH72) GN=rpsM PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.513e-26 Identity = 61/119 (51.26%), Postives = 81/119 (68.07%), Query Frame = -2 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLN--IGNKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 456 R+ IPN K E +L +YGIGRSRA +I CD + + K+LT ++ LR+EV R++ DLRR + +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R AI GKK Sbjct: 3 RIAGVNIPNHKHAEIALTAIYGIGRSRAQKI-CDAAGVVRSAKIKDLTESDMEKLRDEVGRFVVEGDLRREVTMNIKRLMDLGCYRGVRHRRGLPLRGQRTRTNARTRKGPRKAIAGKK 120
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_MYCA5 (30S ribosomal protein S13 OS=Mycoplasma arthritidis (strain 158L3-1) GN=rpsM PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 4.287e-26 Identity = 63/118 (53.39%), Postives = 81/118 (68.64%), Query Frame = -2 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 456 RV N EIPN KR SL +++GIG++ A QIL D N+ NK + L+ EL +REE +Y+T DLRR I +++RL++I+ YRGIRH +GLP RGQ T NARTRKG R I GKK Sbjct: 3 RVLNVEIPNKKRAVISLTYIFGIGKTLASQILKDANVDENKKVESLSEEELTRIREEAKKYVTEGDLRREINLNIKRLMEIKSYRGIRHRKGLPVRGQCTQKNARTRKGPRKTIAGKK 120
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_DECAR (30S ribosomal protein S13 OS=Dechloromonas aromatica (strain RCB) GN=rpsM PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 7.312e-26 Identity = 57/118 (48.31%), Postives = 81/118 (68.64%), Query Frame = -2 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 456 R+ IPN + E +L ++GIGR+RA +I +G N K+L+ +++ LR+EV ++ DLRR + +++RL+D+ CYRG+RH +GLPCRGQRT TNARTRKG R AI GKK Sbjct: 3 RIAGVNIPNHQHAEIALTAIFGIGRTRAQKICDAAGVGRNVKMKDLSDSDMDRLRDEVGKFTVEGDLRREVTMNIKRLMDLGCYRGLRHRKGLPCRGQRTRTNARTRKGPRKAIAGKK 120
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_AZOSE (30S ribosomal protein S13 OS=Azoarcus sp. (strain EbN1) GN=rpsM PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 7.312e-26 Identity = 59/118 (50.00%), Postives = 80/118 (67.80%), Query Frame = -2 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 456 R+ IPN K E +L +YGIGRSRA +I N+ + K+LT ++ LR+EV++++ DLRR +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R AI GKK Sbjct: 3 RIAGVNIPNHKHAEIALTAIYGIGRSRAQKICDAANVVRSVKMKDLTESDMERLRDEVAKFIVEGDLRRETTMNIKRLMDLGCYRGVRHRRGLPLRGQRTRTNARTRKGPRKAIAGKK 120 The following BLAST results are available for this feature:
BLAST of CX672493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX672493 ID=CX672493; Name=CX672493; organism=Citrus sinensis; type=EST; length=619bpback to top |