CX672490

Overview
NameCX672490
Unique NameCX672490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672490 vs. ExPASy Swiss-Prot
Match: KEULE_ARATH (SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2)

HSP 1 Score: 286.574 bits (732), Expect = 1.349e-76
Identity = 143/195 (73.33%), Postives = 169/195 (86.67%), Query Frame = -2
Query:  332 LLGGALESKKSTI*AFSLKFDIHKKKRAARKDRSGREETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTL---SALTHEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAH-ELSLDDIQI 904
            LLG A+++KK+T   F+LKFD+HKKKRA RK+R   E  WQLSRFYPMIEEL+EKL K EL K+D+PCMNDPSP+FHG+T    +A + +  AA SMRSRRTPTWA+PR SDDGYSSDSVL+HASSDF+KMGQRIFVFIVGGATRSEL+VCHKL+ KL REV+LGS+SLDDPPQFITKLK+LTA+ +LSLDD+QI
Sbjct:  473 LLGSAVDAKKNTPGGFTLKFDLHKKKRAVRKERQ-EEAAWQLSRFYPMIEELIEKLSKGELPKEDFPCMNDPSPSFHGSTSLSSAASSSQGQAAQSMRSRRTPTWAKPRGSDDGYSSDSVLRHASSDFRKMGQRIFVFIVGGATRSELKVCHKLSTKLKREVILGSTSLDDPPQFITKLKLLTANDDLSLDDLQI 666          
BLAST of CX672490 vs. ExPASy Swiss-Prot
Match: SEC1A_ORYSJ (Probable protein transport Sec1a OS=Oryza sativa subsp. japonica GN=Os04g0252400 PE=3 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 2.233e-63
Identity = 123/189 (65.08%), Postives = 149/189 (78.84%), Query Frame = -2
Query:  332 ESKKSTI*AFSLKFDIHKKKRAARKDRSGREETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTLSALTHEVPA---AHSMRSRRTP-TWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHELSLDDIQI 886
            +SKKS+   F+LKFD+ KK+   RK+R G E  W LSRFYP++EEL+EKL K EL KD+Y  +NDPSP+F G   SA T   PA   A SMRSRRT  TWARPR SDDGYSSDSVLKH SS+ +K+GQR+FVF++GGATRSEL   HKL++KL RE++LGSSSLDDPPQFITKLKML+  +L+LDD+QI
Sbjct:  478 DSKKSSAGGFTLKFDLRKKRHGIRKERIGEESKWMLSRFYPILEELIEKLSKGELPKDEYHYLNDPSPSFRGIP-SASTQTSPAHQPAQSMRSRRTGGTWARPRDSDDGYSSDSVLKHTSSNSRKLGQRLFVFVIGGATRSELCAAHKLSSKLKREIILGSSSLDDPPQFITKLKMLSTDDLTLDDLQI 665          
BLAST of CX672490 vs. ExPASy Swiss-Prot
Match: SEC1B_ARATH (Protein transport Sec1b OS=Arabidopsis thaliana GN=SEC1B PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 2.311e-60
Identity = 124/188 (65.96%), Postives = 141/188 (75.00%), Query Frame = -2
Query:  332 ESKKSTI*AFSLKFDIHKKKRAARKDRSGREETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTLSALTHEVPAAHSM--RSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLT-AHELSLDDIQI 886
            E KKST  +F LKFD+ K KRAAR+DR G  +TWQLSRFYP++EELVEKL K  L K DYPCMN+P PTF+  +LS      P+A  +   SRRTPTWAR   SDDGY SDSVL  ASS FK+ GQRIFVFIVGGATRSELRVCHKLT KL+REV+LGSSS  DP  F+TK+K L    E+SLDDI I
Sbjct:  481 ECKKSTTGSFPLKFDVLKTKRAARRDRVGETQTWQLSRFYPIVEELVEKLSKGHLPKQDYPCMNEPKPTFYSGSLS------PSASPVLPHSRRTPTWARRHLSDDGYFSDSVLGRASSGFKRKGQRIFVFIVGGATRSELRVCHKLTEKLDREVILGSSSFLDPLTFLTKMKQLNEEEEISLDDIVI 662          
BLAST of CX672490 vs. ExPASy Swiss-Prot
Match: SEC1A_ARATH (Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3)

HSP 1 Score: 232.646 bits (592), Expect = 2.311e-60
Identity = 125/194 (64.43%), Postives = 144/194 (74.23%), Query Frame = -2
Query:  353 LLGGALESKKSTI*AFSLKFDIHKKKRAARKDRSGREETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPS--PTFHGTTLSALTHEVPAA--------HSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHEL 904
            L+ G+ E+K  +  +FSLKFD  K K+A RKDRSG EETWQL RFYPMIEEL+EKL K +LSK DY CMN  S        T S      P A        HSMRSRRT TWARP SSDDGYSSDSVLK AS++FKK+GQRIFVFI+GGATRSELRVCHKLT+ L REVVLGS+S DDPPQ+ITKLK+L+  ++
Sbjct:  468 LIAGSPENKAKSG-SFSLKFDAGKTKQANRKDRSGEEETWQLFRFYPMIEELLEKLVKGDLSKSDYLCMNQSSHKEESEARTGSVRKSSAPTAVPERKATPHSMRSRRTATWARPHSSDDGYSSDSVLKSASTEFKKLGQRIFVFIIGGATRSELRVCHKLTSSLRREVVLGSTSFDDPPQYITKLKLLSEKDI 660          
BLAST of CX672490 vs. ExPASy Swiss-Prot
Match: SEC1B_ORYSJ (Probable protein transport Sec1b OS=Oryza sativa subsp. japonica GN=Os06g0135900 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.986e-55
Identity = 113/183 (61.75%), Postives = 136/183 (74.32%), Query Frame = -2
Query:  362 LGGALESKKSTI*AFSLKFDIHKKKRAARKDRSGREETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTLSALTHEVPAAHSM--RSRRTPTWARPRSSDDGYSSDS-VLKHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTA 901
            L G+   K S    FSLKFD  KKK AAR +R   +ETW LSRF+P+IEEL+EKL K  L  ++YP M++PS T  G+T SA   +   A  M  RSRRTPTWA+ R+SDD  SSDS VL+H S+DFK++G RIFVF++GGATRSELR  HKLT KL RE+VLGSSS+DDPPQFI+KLKMLTA
Sbjct:  471 LVGSDTKKASRPGGFSLKFDAQKKKNAARTERQDGDETWALSRFFPLIEELIEKLSKGALPLNEYPSMSEPSSTEQGSTQSAAATKPAQAQPMSRRSRRTPTWAKSRNSDDSQSSDSSVLRHGSNDFKRLGNRIFVFMIGGATRSELRTVHKLTMKLKREIVLGSSSIDDPPQFISKLKMLTA 653          
The following BLAST results are available for this feature:
BLAST of CX672490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KEULE_ARATH1.349e-7673.33SNARE-interacting protein KEULE OS=Arabidopsis tha... [more]
SEC1A_ORYSJ2.233e-6365.08Probable protein transport Sec1a OS=Oryza sativa s... [more]
SEC1B_ARATH2.311e-6065.96Protein transport Sec1b OS=Arabidopsis thaliana GN... [more]
SEC1A_ARATH2.311e-6064.43Protein transport Sec1a OS=Arabidopsis thaliana GN... [more]
SEC1B_ORYSJ4.986e-5561.75Probable protein transport Sec1b OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_17C09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17C09-E17-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672490 ID=CX672490; Name=CX672490; organism=Citrus sinensis; type=EST; length=905bp
AAAACGAAATGTTGGCATAAGGTTCCACTATCGTTTAATTGTAGAATTCA
ATCGGTTACATCTATCAAACACAACAGGACTATACATGTGAATTACTTGC
TGAATCCAGCATAAACATTATAATAAAAAACCAGGAAGCACCTCCTGAGC
CAGGCAGGACGCTCAACTGAAATATTCTAGGCACTATAGATATCCACTAC
AGATATCTAACAGCATACATTTTTTGCATCATCAGTTAAGAAAATGGAGT
GATATACAGTAAATATAGGAGGATCAATCAGCAATTTGTTAGTGAAATTA
AAGCATTCCAGGTCTCTCTGCCCACCATTTATATCTGGATATCATCTAAT
GAAAGTTCATGAGCTGTCAGCATCTTCAGTTTCGTAATAAACTGAGGAGG
ATCATCTAGACTTGATGAGCCGAGAACAACTTCTCTATTCAGTTTTGCTG
TCAGCTTGTGACAAACCCTCAACTCCGATCTAGTGGCGCCACCGACAATA
AATACAAAAATACGTTGACCCATCTTCTTAAAATCACTCGATGCATGTTT
TAGTACTGAATCACTTGAATATCCATCATCAGAGCTCCGAGGACGAGCCC
ACGTTGGTGTCCGTCTCGATCTCATTGAATGAGCAGCTGGAACTTCATGT
GTTAATGCAGAGAGGGTTGTCCCATGGAATGTTGGACTCGGATCATTCAT
ACAGGGATAATCATCCTTTGATAGTTCATTTTTTCCGAGTTTTTCAACAA
GTTCCTCTATCATTGGGTAAAAACGAGATAACTGCCATGTTTCTTCTCTG
CCGCTGCGATCTTTCCTAGCTGCCCGCTTTTTCTTGTGGATATCAAACTT
CAGAGAAAAAGCTCAAATTGTACTCTTTTTACTCTCTAATGCTCCCCCAA
GTAAT
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