CX672488

Overview
NameCX672488
Unique NameCX672488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX672488 vs. ExPASy Swiss-Prot
Match: NAC78_ARATH (NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.077e-19
Identity = 55/113 (48.67%), Postives = 75/113 (66.37%), Query Frame = -2 
Query:  421 GQHQVEVHGNDVASTSEQKPDIVKSESDVKYPFLKQASQMLGNVAAAPAFASEFPTKDAALRLNSLAHPSSSVHVTAGMIRIRNITLSG-SGLDWSVGKNGDMNIVFSFDLSQ 756
            G+  VE   +   S+S+Q  D    +S  KYPFLK+ S MLG +    +FAS+F TKD A+RL++ A  S SVHVTAGM+RI N+TL+  SG+ WS  KNG++N+V SF + Q
Sbjct:  413 GKEAVEEKESGEGSSSKQDTDFKDFDSAPKYPFLKKTSHMLGAIPTPSSFASQFQTKD-AMRLHA-AQSSGSVHVTAGMMRISNMTLAADSGMGWSYDKNGNLNVVLSFGVVQ 523
The following BLAST results are available for this feature:
BLAST of CX672488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NAC78_ARATH2.077e-1948.67NAC domain-containing protein 78 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_17C08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17C08-E15-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672488 ID=CX672488; Name=CX672488; organism=Citrus sinensis; type=EST; length=790bp
TTTTTTTTTTTTTTTTGGAAAGCGAAACCAGAATTTCAAATAATATTATC
GTATTCGACTACAAGTGTGGACATATTTAAAAGTTACAATGGTATAAAGT
ATATAAGACGCCAACTTAATTTGACAGTCAAAAAGTTACATATAACAACA
TATCTGCAATGAGGTGGTGTCCAAGTCAATAATCTATAAAGAAATATCAA
TATCAACCAACCCTATCAACTTAACCAGCAAATAAAGTTTTGGATGCAGT
AATCCTGTTTACTTGGCAGAGACACAGGCACCAATCTTAAAACCCACTGA
AAGAATTACGATCCAAAGGAACAACAACAACCACAAGCTCCGGAACACCA
CCGACCCCGTCTTACCAGAGAAAATGTTACCCGCCGGTTCAAAACTGGTA
TGACTAGGACTGATGACATTTTGTGACAAGTCAAAAGAAAAGACAATATT
CATATCCCCATTCTTGCCAACCGACCAGTCCAATCCACTTCCACTTAAAG
TGATATTTCTGATTCTGATCATACCGGCAGTAACATGAACTGAACTGGAC
GGATGAGCCAATGAATTGAGTCGAAGAGCTGCATCCTTCGTAGGGAACTC
CGAGGCAAATGCAGGAGCAGCAGCAACGTTGCCCAACATTTGACTGGCCT
GTTTGAGGAAGGGATACTTGACATCTGATTCGGATTTGACAATATCTGGC
TTTTGCTCTGAAGTGGATGCAACATCATTACCATGTACTTCAACTTGATG
CTGGCCAGCCATGGACATTTGATCAGTTACTTCAGTCACC
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