CX672481

Overview
NameCX672481
Unique NameCX672481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length942
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672481 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 5.224e-79
Identity = 139/167 (83.23%), Postives = 154/167 (92.22%), Query Frame = -3
Query:  122 LEVGRETAALT----AALIHGRWAMAAVVGIFVGQTWSGIPWFEAGADPGAIAPFSFGSLLGTQLLVMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTP 610
            L +G++ A L     A LIHGRWAMAAV+GIFVGQ WSGIPWFEAGADPGAIAPFSFG+LLGTQL++MGWVESKRWVDFF+P+SQSVEWATPWS+TAENFAN TGEQGYPGGKFFDPL LAGT+ +GVY+PDTEKL+RLKVAEIKHARLAM+AMLIFYFEAGQGKTP
Sbjct:   84 LGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEAGQGKTP 250          
BLAST of CX672481 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 2.195e-77
Identity = 136/167 (81.44%), Postives = 153/167 (91.62%), Query Frame = -3
Query:  122 LEVGRETAALT----AALIHGRWAMAAVVGIFVGQTWSGIPWFEAGADPGAIAPFSFGSLLGTQLLVMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTP 610
            L +G++ A L     A LIHGRWAMAAV+GIFVGQ WSGIPWFEAGADPGAIAPFSFGSLLGTQLL+MGWVESKRWVDFF+ +SQS++WATPWS+TAENFAN TGEQGYPGGKFFDPL LAGT+ +GVY+PDTEKL+RLK+AEIKH+RLAM+AMLIFYFEAGQGKTP
Sbjct:   84 LGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEAGQGKTP 250          
BLAST of CX672481 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.867e-77
Identity = 136/167 (81.44%), Postives = 153/167 (91.62%), Query Frame = -3
Query:  122 LEVGRETAALT----AALIHGRWAMAAVVGIFVGQTWSGIPWFEAGADPGAIAPFSFGSLLGTQLLVMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTP 610
            L +G++ A L     A LIHGRWAM AV+GIFVGQ W+GIPWFEAGADPGA+APFSFG+LLGTQLL+MGWVESKRWVDFF+P+SQSVEWATPWSRTAENF+N+TGEQGYPGGKFFDPL LAGTI +GVY PDT+KL+RLK+AEIKHARLAM+AMLIFYFEAGQGKTP
Sbjct:   89 LGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTP 255          
BLAST of CX672481 vs. ExPASy Swiss-Prot
Match: FENR1_TOBAC (Ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic OS=Nicotiana tabacum GN=PETH PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.099e-44
Identity = 89/122 (72.95%), Postives = 98/122 (80.33%), Query Frame = 3
Query:  576 AVSAAVXXXXXXXXXXXXXXXIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIG 941
            AVSAAV               IIS D+I F KVP YY++VS G R+VS+RAQVTTEAPAKVEK SKK +EGVIVNKF+PK PY+GRCLLNTKITGDDAPGETWHMVFSTEGEVPY+EGQSIG
Sbjct:    4 AVSAAVSLPSSKSTSFSSRTSIISTDKINFNKVPLYYRNVSGGSRLVSIRAQVTTEAPAKVEKISKKQDEGVIVNKFRPKEPYVGRCLLNTKITGDDAPGETWHMVFSTEGEVPYREGQSIG 125          
BLAST of CX672481 vs. ExPASy Swiss-Prot
Match: FENR_SPIOL (Ferredoxin--NADP reductase, chloroplastic OS=Spinacia oleracea GN=PETH PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 8.154e-40
Identity = 74/107 (69.16%), Postives = 92/107 (85.98%), Query Frame = 3
Query:  639 IISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTE------APAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIG 941
            +ISPD+I+++KVP YY++VS  G++  +RAQ+ ++      APAKVEK SKKMEEG+ VNKFKPKTPY+GRCLLNTKITGDDAPGETWHMVFS EGE+PY+EGQS+G
Sbjct:   26 VISPDKISYKKVPLYYRNVSATGKMGPIRAQIASDVEAPPPAPAKVEKHSKKMEEGITVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGEIPYREGQSVG 132          
BLAST of CX672481 vs. ExPASy Swiss-Prot
Match: FENR1_PEA (Ferredoxin--NADP reductase, leaf isozyme, chloroplastic OS=Pisum sativum GN=PETH PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 4.047e-39
Identity = 80/123 (65.04%), Postives = 94/123 (76.42%), Query Frame = 3
Query:  573 AAVSAAVXXXXXXXXXXXXXXXIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIG 941
            AAV+AAV               I++P+R+ F+KV     +VS  GRV ++RAQVTTEAPAKV K SKK +E ++VNKFKPK PY+GRCLLNTKITGDDAPGETWHMVFSTEGEVPY+EGQSIG
Sbjct:    3 AAVTAAVSLPYSNSTSLPIRTSIVAPERLVFKKVSL--NNVSISGRVGTIRAQVTTEAPAKVVKHSKKQDENIVVNKFKPKEPYVGRCLLNTKITGDDAPGETWHMVFSTEGEVPYREGQSIG 123          
BLAST of CX672481 vs. ExPASy Swiss-Prot
Match: FENR_MESCR (Ferredoxin--NADP reductase, chloroplastic OS=Mesembryanthemum crystallinum GN=PETH PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.787e-37
Identity = 74/103 (71.84%), Postives = 88/103 (85.44%), Query Frame = 3
Query:  639 IISPDRITFRKVPFYYKDVSTGGRVVSVRAQVT-TEAP-AKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIG 941
            +I+ ++I F KVP YY++VS GG+V ++RA  +  EAP AKVEK SKKMEEGVIVNK+KPK PY GRCLLNTKITGDDAPGETWHMVFS EGE+PY+EGQS+G
Sbjct:   26 VITHEKINFNKVPLYYRNVSVGGKVGTIRAVASDVEAPVAKVEKHSKKMEEGVIVNKYKPKNPYTGRCLLNTKITGDDAPGETWHMVFSHEGEIPYREGQSVG 128          
BLAST of CX672481 vs. ExPASy Swiss-Prot
Match: FENR_VICFA (Ferredoxin--NADP reductase, chloroplastic OS=Vicia faba GN=PETH PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.102e-36
Identity = 78/126 (61.90%), Postives = 93/126 (73.81%), Query Frame = 3
Query:  573 AAVSAAVXXXXXXXXXXXXXXXIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAPA---KVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIG 941
            AAV+AAV               I++P+R+ F+KV      VS  GRV ++RAQ+TTEA A   KV K SKK +EG++VNKFKPK PY+GRCLLNTKITGDDAPGETWHMVF+TEGEVPY+EGQSIG
Sbjct:    3 AAVTAAVSLPYSNSTSLPIRTSIVAPERLVFKKVSL--NSVSISGRVGTIRAQITTEAEAPVTKVVKHSKKQDEGIVVNKFKPKEPYVGRCLLNTKITGDDAPGETWHMVFTTEGEVPYREGQSIG 126          
BLAST of CX672481 vs. ExPASy Swiss-Prot
Match: FNRL1_ARATH (Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic OS=Arabidopsis thaliana GN=LFNR1 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.298e-34
Identity = 77/127 (60.63%), Postives = 88/127 (69.29%), Query Frame = 3
Query:  573 AAVSAAVXXXXXXXXXXXXXXXIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEA----PAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIG 941
            AA+SAAV                +SP RI  +K    Y+      RVVSV+AQVTT+     P KV KESKK EEG++VNKFKPK PY GRCLLNTKITGDDAPGETWH+VF+TEGEVPY+EGQSIG
Sbjct:    3 AAISAAVSLPSSKSSSLLTKISSVSPQRIFLKKSTVCYR------RVVSVKAQVTTDTTEAPPVKVVKESKKQEEGIVVNKFKPKNPYTGRCLLNTKITGDDAPGETWHIVFTTEGEVPYREGQSIG 123          
BLAST of CX672481 vs. ExPASy Swiss-Prot
Match: FNRL2_ARATH (Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic OS=Arabidopsis thaliana GN=LFNR2 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.945e-33
Identity = 72/107 (67.29%), Postives = 86/107 (80.37%), Query Frame = 3
Query:  642 ISPDRITFRKVPFYYK--DVSTGGRVVSVRAQVTTEA----PAK-VEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIG 941
            I+P+RI F K  FYYK  +V TG RV S++AQ+TTE     PAK VEK SKK EEGVIVN+++PK PY G+CLLNTKIT DDAPGETWHMVFS +GE+PY+EGQS+G
Sbjct:   26 IAPERIRFTKGAFYYKSNNVVTGKRVFSIKAQITTETDTPTPAKKVEKVSKKNEEGVIVNRYRPKEPYTGKCLLNTKITADDAPGETWHMVFSHQGEIPYREGQSVG 132          
The following BLAST results are available for this feature:
BLAST of CX672481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
CB4A_SOLLC5.224e-7983.23Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC2.195e-7781.44Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4_SPIOL2.867e-7781.44Chlorophyll a-b binding protein CP24, chloroplasti... [more]
FENR1_TOBAC1.099e-4472.95Ferredoxin--NADP reductase, leaf-type isozyme, chl... [more]
FENR_SPIOL8.154e-4069.16Ferredoxin--NADP reductase, chloroplastic OS=Spina... [more]
FENR1_PEA4.047e-3965.04Ferredoxin--NADP reductase, leaf isozyme, chloropl... [more]
FENR_MESCR3.787e-3771.84Ferredoxin--NADP reductase, chloroplastic OS=Mesem... [more]
FENR_VICFA1.102e-3661.90Ferredoxin--NADP reductase, chloroplastic OS=Vicia... [more]
FNRL1_ARATH2.298e-3460.63Ferredoxin--NADP reductase, leaf isozyme 1, chloro... [more]
FNRL2_ARATH1.945e-3367.29Ferredoxin--NADP reductase, leaf isozyme 2, chloro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_17C03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17C03-E5-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672481 ID=CX672481; Name=CX672481; organism=Citrus sinensis; type=EST; length=942bp
TTTTTAACCCCATCAAATTGAACTCTCATTGAGGGAACTCATATACATCC
GATTGATTACCCTTTAACATCAATCAGTGAGTTATCTACATAAGCATGTT
TTACAAACCAAGAGCCCCAAGTGGCGTCTTGCCTTGGCCAGCTTCAAAGT
AGAAAATCAACATGGCCACCATAGCAAGCCTAGCATGTTTAATCTCAGCA
ACTTTGAGCCTGTCAAGCTTCTCAGTGTCAGGAATGTAGACACCATCCTT
AATTGTTCCAGCCAAACATAAGGGATCAAAAAACTTTCCACCAGGGTAGC
CTTGTTCACCAGTCGCATTGGCAAAGTTTTCAGCAGTTCTTGACCATGGT
GTTGCCCATTCAACTGATTGGGATTCAGGATTGAAAAAATCAACCCACCG
CTTGCTCTCAACCCAACCCATAACGAGAAGCTGGGTTCCCAGGAGTGAGC
CGAAGGAGAAGGGTGCTATGGCTCCAGGATCTGCTCCAGCCTCGAACCAT
GGAATCCCACTCCACGTCTGTCCGACGAATATCCCAACAACTGCAGCCAT
TGCCCATCGTCCGTGGATCAGGGCTGCAGTGAGTGCTGCAGTTTCTCTTC
CGACTTCCAAGTCCACTTCGCTTCCAACCAGAACCTCTATCATCTCTCCT
GACAGAATCACCTTCAGAAAGGTTCCATTTTACTACAAAGATGTTTCAAC
TGGAGGGAGAGTGGTTTCTGTCAGAGCTCAGGTTACCACTGAGGCTCCTG
CTAAGGTTGAGAAAGAGTCCAAGAAAATGGAGGAAGGTGTTATTGTTAAC
AAGTTCAAACCTAAGACACCTTACATTGGCAGATGCCTTTTAAACACTAA
GATCACTGGTGATGATGCTCCTGGAGAGACCTGGCACATGGTCTTCAGCA
CTGAAGGAGAGGTTCCCTACAAAGAAGGGCAATCAATTGGGG
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