CX672479

Overview
NameCX672479
Unique NameCX672479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672479 vs. ExPASy Swiss-Prot
Match: KIF6_DICDI (Kinesin-related protein 6 OS=Dictyostelium discoideum GN=kif6 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.024e-14
Identity = 55/141 (39.01%), Postives = 77/141 (54.61%), Query Frame = 2
Query:    2 FRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL--SKSGNTKK-----------------DQGQNS--LIPINKDTSSASSIPVSADVEDVYEPQQDVKVVDTGRRVTEKETLSYIPTVDYDKQQ 361
            FR S LT+VL+DSFVGNS+TVMI+ ISPN  S EHTLNTLRYADRVK L  S+S + KK                  Q  N   LIP    T++ ++  +++    + +  Q V  +   ++  +++  S IP     +QQ
Sbjct:  727 FRQSTLTQVLKDSFVGNSRTVMIANISPNQSSSEHTLNTLRYADRVKELGTSESNSNKKPVATYNIPAPLPPPDHLKQNFNDPILIPSTTTTTTTTATAINSQQPIIQQTSQPVSKI---KQPVKQQQESQIPQTPQQQQQ 864          
BLAST of CX672479 vs. ExPASy Swiss-Prot
Match: KIF2C_MOUSE (Kinesin-like protein KIF2C OS=Mus musculus GN=Kif2c PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.892e-14
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 2
Query:    2 FRGSKLTEVLRDSFVG-NSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKDQGQNSLIPINKDTSSASSIPVSADVE 253
            FR SKLT+VLRDSF+G NS+T MI+ ISP + SCE+TLNTLRYADRVK LS       +Q       + + +S+ +S+  + + E
Sbjct:  535 FRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSPHSGPSGEQPVQMETEVMEASSNGTSLTGNEEEE 619          
BLAST of CX672479 vs. ExPASy Swiss-Prot
Match: KIF2C_CRIGR (Kinesin-like protein KIF2C OS=Cricetulus griseus GN=KIF2C PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.083e-14
Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 2
Query:    2 FRGSKLTEVLRDSFVG-NSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKDQGQNSLIPINKDTSSASSIPVSADVEDVYEPQ 271
            FR SKLT+VLRDSF+G NS+T MI+ ISP + SCE+TLNTLRYADRVK LS       +Q         + +S+ +S+ V+   E+    Q
Sbjct:  533 FRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSPHSGLSGEQPIQMETEEMEASSNGTSLAVNFKEEEELSSQ 623          
BLAST of CX672479 vs. ExPASy Swiss-Prot
Match: KIF2C_RAT (Kinesin-like protein KIF2C OS=Rattus norvegicus GN=Kif2c PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.132e-13
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:    2 FRGSKLTEVLRDSFVG-NSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKDQ 178
            FR SKLT+VLRDSF+G NS+T MI+ ISP + SCE+TLNTLRYADRVK LS       +Q
Sbjct:  485 FRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSPHSGPSGEQ 544          
BLAST of CX672479 vs. ExPASy Swiss-Prot
Match: KIF2C_MACFA (Kinesin-like protein KIF2C OS=Macaca fascicularis GN=KIF2C PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.132e-13
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:    2 FRGSKLTEVLRDSFVG-NSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKDQ 178
            FR SKLT+VLRDSF+G NS+T MI+ ISP + SCE+TLNTLRYADRVK LS       +Q
Sbjct:  485 FRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPHSGPSGEQ 544          
BLAST of CX672479 vs. ExPASy Swiss-Prot
Match: KIF2C_HUMAN (Kinesin-like protein KIF2C OS=Homo sapiens GN=KIF2C PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.132e-13
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:    2 FRGSKLTEVLRDSFVG-NSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKDQ 178
            FR SKLT+VLRDSF+G NS+T MI+ ISP + SCE+TLNTLRYADRVK LS       +Q
Sbjct:  539 FRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPHSGPSGEQ 598          
BLAST of CX672479 vs. ExPASy Swiss-Prot
Match: KIF24_MOUSE (Kinesin-like protein KIF24 OS=Mus musculus GN=Kif24 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 49/130 (37.69%), Postives = 67/130 (51.54%), Query Frame = 2
Query:    2 FRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSK--------------SGNTKKDQGQNSLIPINKDTSSASSIPVSADVEDVYEPQQDVKVVDTGRRVTEKETLSYIPTVDY 349
            FR SKLT+VL+DSF+GN+KT MI+ ISP+  + EHTLNTLRYADRVK L K              S N    + Q+S + +  D  S   + +          QQ + V     +V      S++P V +
Sbjct:  493 FRQSKLTQVLKDSFIGNAKTCMIANISPSHIATEHTLNTLRYADRVKELKKGVKCCASATSQNQTSANASPKRIQSSPVTLPGDKCSPKKVKLGL--------QQSLTVAPGPTKVKAHPLASHVPNVPF 614          
BLAST of CX672479 vs. ExPASy Swiss-Prot
Match: KIF24_HUMAN (Kinesin-like protein KIF24 OS=Homo sapiens GN=KIF24 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 2
Query:    2 FRGSKLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSK--------------SGNTKKDQGQNSLIPINKDTSSASSI 232
            FR SKLT+VL+DSF+GN+KT MI+ ISP+  + EHTLNTLRYADRVK L K              SGN+   + Q+S   +++D  S   +
Sbjct:  498 FRQSKLTQVLKDSFIGNAKTCMIANISPSHVATEHTLNTLRYADRVKELKKGIKCCTSVTSRNRTSGNSSPKRIQSSPGALSEDKCSPKKV 588          
BLAST of CX672479 vs. ExPASy Swiss-Prot
Match: KI10A_DROME (Kinesin-like protein Klp10A OS=Drosophila melanogaster GN=Klp10A PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query:    2 FRGSKLTEVLRDSFVGN-SKTVMISCISPNVGSCEHTLNTLRYADRVKSL 148
            FR SKLT+VLRDSF+G  SKT MI+ ISP + SCEHTLNTLRYADRVK L
Sbjct:  561 FRVSKLTQVLRDSFIGEKSKTCMIAMISPGLSSCEHTLNTLRYADRVKEL 610          
BLAST of CX672479 vs. ExPASy Swiss-Prot
Match: KIF2C_XENLA (Kinesin-like protein KIF2C OS=Xenopus laevis GN=kif2c PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 37/59 (62.71%), Postives = 44/59 (74.58%), Query Frame = 2
Query:    2 FRGSKLTEVLRDSFVG-NSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKD 175
            FR SKLT++LRDSF+G NS+T MI+ +SP   SCE+TLNTLRYADRVK LS       D
Sbjct:  543 FRESKLTQILRDSFIGENSRTCMIAMLSPGFNSCEYTLNTLRYADRVKELSPQNAETND 601          
The following BLAST results are available for this feature:
BLAST of CX672479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
KIF6_DICDI1.024e-1439.01Kinesin-related protein 6 OS=Dictyostelium discoid... [more]
KIF2C_MOUSE3.892e-1449.41Kinesin-like protein KIF2C OS=Mus musculus GN=Kif2... [more]
KIF2C_CRIGR5.083e-1448.35Kinesin-like protein KIF2C OS=Cricetulus griseus G... [more]
KIF2C_RAT1.132e-1365.00Kinesin-like protein KIF2C OS=Rattus norvegicus GN... [more]
KIF2C_MACFA1.132e-1365.00Kinesin-like protein KIF2C OS=Macaca fascicularis ... [more]
KIF2C_HUMAN1.132e-1365.00Kinesin-like protein KIF2C OS=Homo sapiens GN=KIF2... [more]
KIF24_MOUSE2.523e-1337.69Kinesin-like protein KIF24 OS=Mus musculus GN=Kif2... [more]
KIF24_HUMAN5.620e-1347.25Kinesin-like protein KIF24 OS=Homo sapiens GN=KIF2... [more]
KI10A_DROME5.620e-1376.00Kinesin-like protein Klp10A OS=Drosophila melanoga... [more]
KIF2C_XENLA9.586e-1362.71Kinesin-like protein KIF2C OS=Xenopus laevis GN=ki... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_17C01_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17C01-E1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672479 ID=CX672479; Name=CX672479; organism=Citrus sinensis; type=EST; length=728bp
ATTTCGTGGGAGCAAACTCACAGAAGTGCTCCGCGACTCTTTTGTTGGGA
ATTCAAAGACTGTTATGATTTCCTGCATATCACCTAATGTAGGATCATGT
GAGCATACACTCAATACTTTGAGATATGCTGACAGGGTTAAAAGTCTCTC
AAAAAGTGGGAACACGAAAAAGGATCAAGGTCAAAATTCATTGATACCAA
TTAATAAAGACACTTCATCTGCTTCTTCTATCCCTGTTTCTGCTGATGTG
GAGGATGTTTATGAACCACAACAAGATGTGAAAGTGGTGGATACGGGTAG
AAGAGTCACTGAAAAGGAAACTTTATCTTACATTCCTACTGTTGATTATG
ACAAACAGCAATCAAGCTTTTCATCTGGCTTCAGTGGAAGAGAGGAAAGT
GGGGTGGCCTCTGGTTCAATGGATAGGGAGAGGTTTGAAATTAATAATGC
TTATGGTGGTTCTACCAGTCAAAAGATGCGCCCTTCATATTCTCAAAATT
CTCTTGATACAGAAGAGAAAGTGCAAAAGGTATCACCACCTCGTAGAAAA
GGGTCTAGGGATACTGAAAAATCAGAAAAGTTGGGAAGCTGGCTGAAAAA
AGACAGCAATGGATCAGAGCCATCCACCACAAACTCCAGGCAACAGAGTA
CAAGCAATTACAACATAAATAATGTTGGATCTAAACAACCTCAACCTCAA
CCTCCATCAGATGGGAATATCAATGCTC
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