CX672436

Overview
NameCX672436
Unique NameCX672436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9337 contig Csv1_Contig9337:925..1664. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672436 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.429e-19
Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 3
Query:  399 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 686
            ++C  L NMF+P+ E    +D +IK+DV  EC+K G + HI+V+K+SA G VY++  +  +A AA  ALHGRWFAGKMITA ++   TY   FPDS+
Sbjct:  417 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSM 513          
BLAST of CX672436 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.429e-19
Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 3
Query:  399 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 686
            ++C  L NMF+P+ E    +D +IK+DV  EC+K G + HI+V+K+SA G VY++  +  +A AA  ALHGRWFAGKMITA ++   TY   FPDS+
Sbjct:  423 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSM 519          
BLAST of CX672436 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.429e-19
Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 3
Query:  399 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 686
            ++C  L NMF+P+ E    +D +IK+DV  EC+K G + HI+V+K+SA G VY++  +  +A AA  ALHGRWFAGKMITA ++   TY   FPDS+
Sbjct:  423 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSM 519          
BLAST of CX672436 vs. ExPASy Swiss-Prot
Match: RSD1_SCHPO (RNA-binding protein rsd1 OS=Schizosaccharomyces pombe GN=rsd1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.013e-14
Identity = 38/98 (38.78%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  393 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECS-KFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDS 683
            + S C LL+NMF+P  ET   +  ++++DV+ EC  K+GK+ HI V  +  G ++++FEN   A  A   LH RWF G+ I A+ +    Y  KFP++
Sbjct:  504 IRSRCALLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKASILPETDYYFKFPNA 601          
BLAST of CX672436 vs. ExPASy Swiss-Prot
Match: MAN1_HUMAN (Inner nuclear membrane protein Man1 OS=Homo sapiens GN=LEMD3 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 34/95 (35.79%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  405 CLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 686
            CL ++NMFDP  E  +++ + I+E +  +CS    + HI V+K+S  G VY++  + + A  A +ALHG WF GK++T  ++    Y  +FP ++
Sbjct:  785 CLKIRNMFDPVMEIGDQWHLAIQEAILEKCSDNDGIVHIAVDKNSREGCVYVKCLSPEYAGKAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQAL 879          
The following BLAST results are available for this feature:
BLAST of CX672436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RBM39_PONAB2.429e-1949.48RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE... [more]
RBM39_MOUSE2.429e-1949.48RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]
RBM39_HUMAN2.429e-1949.48RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
RSD1_SCHPO4.013e-1438.78RNA-binding protein rsd1 OS=Schizosaccharomyces po... [more]
MAN1_HUMAN5.424e-1135.79Inner nuclear membrane protein Man1 OS=Homo sapien... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_16H07_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-16H07-P14-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672436 ID=CX672436; Name=CX672436; organism=Citrus sinensis; type=EST; length=740bp
ATTTGAATGGTCAACTGGAGATTGTTGGCCGGGCAATTAAGGTGTCAGCT
GTTACTGATCAAAGCGGATTGCAAGATCTTGGGGCTAATACTACTGGGGA
TTTTGATGATGACGAAGGTGGTGGTCTGTCTCTGAATGCGCGTTCTCGAG
CACTTCTTATGCAGAAATTGGATCGTAGTGGCAGTGCTACAACTATTGCT
GGTTCTGTAGTCACGCCTGCAGTCAACAGTACTGCTCTTCCTTTACCAAC
GGCACCACTTCTTGGAGCTGCCTCTGCTGTGTCTACCCTTGTTCCTCCTC
TTGTGCAAGGTACTGTTCCTACTCATCCTGGACAACTCGGGACTGCTCTT
CAAGTTCCCACTGCTAGCGTTCCCATCTTTGATACAATCGGTGTCCCTAG
TGAATGTCTATTGTTGAAGAATATGTTTGATCCAAAAAATGAGACATACG
AAGAGTTCGATATGGATATCAAAGAAGATGTTGAAGGAGAATGTTCGAAG
TTCGGAAAATTGAAACATATTTTTGTTGAGAAGGATAGCGCTGGATTTGT
GTACTTGCGATTTGAAAATACTCAGTCTGCTTTTGCAGCACAGCGTGCTC
TTCATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAACATTCATGGTG
CCACAGACATACGAGGCTAAGTTTCCTGACAGCATATAAGACTTTGGAAC
ATGGTAATGATCGGTGCTAATGGAAAGAGGAGAGCGATAT
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