CX672419

Overview
NameCX672419
Unique NameCX672419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5646 contig Csv1_Contig5646:378..1168. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX672419 vs. ExPASy Swiss-Prot
Match: VP321_ARATH (Vacuolar protein sorting-associated protein 32 homolog 1 OS=Arabidopsis thaliana GN=VPS32.1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.352e-33
Identity = 71/74 (95.95%), Postives = 71/74 (95.95%), Query Frame = -1 
Query:  570 QLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 791
            QLGNFQLRIHDQMIMLEGAKATTETVDALRTGAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS P G
Sbjct:   76 QLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPFG 149
[Close]
BLAST of CX672419 vs. ExPASy Swiss-Prot
Match: VP322_ARATH (Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana GN=VPS32.2 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.602e-33
Identity = 70/74 (94.59%), Postives = 73/74 (98.65%), Query Frame = -1 
Query:  570 QLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 791
            QLGNFQLRIHDQMIMLEGAKATTETVDALR+GAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEAL+TP+G
Sbjct:   75 QLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPMG 148
The following BLAST results are available for this feature:
BLAST of CX672419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
VP321_ARATH7.352e-3395.95Vacuolar protein sorting-associated protein 32 hom... [more]
VP322_ARATH9.602e-3394.59Vacuolar protein sorting-associated protein 32 hom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_16G10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-16G10-N20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672419 ID=CX672419; Name=CX672419; organism=Citrus sinensis; type=EST; length=791bp
TTTTTTTTTTTTTTTTTCACAATTTGTTCATTTATTAGTATGCCTAAAGA
GTTTCACACCATAACCTGGCAGTACTTCTTCATGAGATGTGAAGTTGCTA
CCAAGAGCTCAACGAACATAAAATTTTCACAGGAGAAGGAAAAAACACAT
CAAAGATGATGAACTCAATTAAAAGGTCTATAAGACAGAATACAGGATAC
ATATTTCAAACAGGACTAGTTTACGCAAACTTTATATACAGTCTGTTCAT
TGAATGCACACAGAAATCTTGAAGGTAATCCAAGTAGGCATAAATCTCCA
CATTATACGGCCAGCTATTTAAATAATATCTTCATTATGGCGGTAAAACC
TGCTTAAAGAGCCATCTCAGCTTGTAAAGCAGCAAGCTCATCTTCCTCAG
CTGTTCGCTGCTTTTGGGGAACAGGACGGGCTTGTTGCCTGCCAGCAGGG
ACCTGAACCGGAGCAGCAGGAGCTGTTGTAGCTGGCTGTAGAAGCTGCTC
TTCCAACTCAGCACCTTCCAGTTCTTCAAGTTCTGCTTCCAATTCATCCT
CATCGAAATCAGCAGCAGCACCAATAGGAGTTGATAATGCTTCTTGAATC
TGCTTCATGTTCTCGGTCTGCTCATTGATCTCATCCATGGTCTTATCCAC
ATCATCTATGTTCGTTGCTTTCTGCATAGCCTTCATTGTCGATGCTCCCG
TCCTCAATGCATCTACAGTCTCAGTTGTGGCTTTAGCACCTTCTAGCATT
ATCATCTGATCATGAATGCGCAATTGGAAATTCCCAAGCTG
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