EY664774

Overview
NameEY664774
Unique NameEY664774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7959 contig Csv1_Contig7959:1..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664774 vs. ExPASy Swiss-Prot
Match: RPG1_ARATH (Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.642e-31
Identity = 77/217 (35.48%), Postives = 124/217 (57.14%), Query Frame = 3
Query:   54 GVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFISYA--EKAIKLKISGLL-IAVFLVFLAIVFTSMEVFDSNGRRLFVGYLSVASLISMFASPLFIIKLVIKTRSVEFMPXXXXXXXXXXXXXXXAYGM-FKDDPFIYVPNGIGTLLGIAQVMLY-SYYSTKSGEVSRQP 689
            GV GN+ +F LF +P  TF RI + KS E+FS +PY+ +++NC++ ++YG+P+V    ILV+T+N VG V +L YV +++ Y   +K  +  I G L + V LV   I+ T   +     ++ FVG +     I+M+ +P   I  V+KT+SVE+MP                Y + FK D ++   NGIGT L ++Q+++Y  YY +   E + +P
Sbjct:   12 GVIGNVISFGLFAAPAKTFWRIFKKKSVEEFSYVPYVATVMNCMLWVFYGLPVVHKDSILVSTINGVGLVIELFYVGVYLMYCGHKKNHRRNILGFLALEVILVVAIILITLFALKGDFVKQTFVGVICDVFNIAMYGAPSLAIIKVVKTKSVEYMPFLLSLVCFVNAGIWTTYSLIFKIDYYVLASNGIGTFLALSQLIVYFMYYKSTPKEKTVKP 228          
BLAST of EY664774 vs. ExPASy Swiss-Prot
Match: R1AP1_DROME (RAG1-activating protein 1 homolog OS=Drosophila melanogaster GN=slv PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.396e-14
Identity = 57/196 (29.08%), Postives = 95/196 (48.47%), Query Frame = 3
Query:   87 FVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFISY-AEKAIKLKISGLLIAVFLVFLAIVFTSMEVFDSNGRRLFV-GYLSVASLISMFASPLFIIKLVIKTRSVEFMPXXXXXXXXXXXXXXXAYGMFKDDPFIYVPNGIGTLLGIAQVMLYSYYSTKS 668
            F+S     R+ ++ KST   SG+P+IC  L+C   L YG+      I+L   VN +G+   L+Y  I+  +   K   +K  G ++ V +V   IV+T+  + D   R + V G +     +  FA+PL  +  VI+ ++ E +P                YG+   D FI +PN +G +L + Q+ L+  Y  +S
Sbjct:   22 FLSGAMICRKYIQKKSTGDSSGVPFICGFLSCSFWLRYGVLTNEQSIVL---VNIIGSTLFLVYTLIYYVFTVNKRACVKQFGFVLTVLVV--VIVYTN-RLEDQRDRMIHVTGIVCCIVTVCFFAAPLASLLHVIRAKNSESLPLPLIATSFVVSLQWLIYGILISDSFIQIPNFLGCILSLLQLGLFVLYPPRS 211          
BLAST of EY664774 vs. ExPASy Swiss-Prot
Match: R1AP1_DROPS (RAG1-activating protein 1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=slv PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.382e-14
Identity = 51/194 (26.29%), Postives = 85/194 (43.81%), Query Frame = 3
Query:   87 FVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFISYAEKAIKLKISGLLIAVFLVFLAIVFTSMEVFDSNGRRLFVGYLSVASLISMFASPLFIIKLVIKTRSVEFMPXXXXXXXXXXXXXXXAYGMFKDDPFIYVPNGIGTLLGIAQVMLYSYYSTKS 668
            F+S     R+ ++ KST   SG+P+IC  L+C   L YG+      I+L   VN +G+   LIY  I+  +             +   L+ + +V+T+      +      G       +  FA+PL  +  VI+ ++ E +P                YG+   D FI +PN +G LL + Q+ L+  Y  +S
Sbjct:   21 FLSGAMICRKYIQKKSTGDSSGVPFICGFLSCSFWLRYGVLTEEQSIVL---VNIIGSTLFLIYTLIYYVFTVNKRAFVRQFAFVLAVLIAVVVVYTNRLADQRDEMIRITGIFCCIVTVCFFAAPLATLLHVIRAKNSESLPLPLIATSFLVSLQWLIYGILISDSFIQIPNFLGCLLSMLQLSLFVVYPPRS 211          
BLAST of EY664774 vs. ExPASy Swiss-Prot
Match: R1AP1_DICDI (RAG1-activating protein 1 homolog OS=Dictyostelium discoideum GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.051e-14
Identity = 54/194 (27.84%), Postives = 94/194 (48.45%), Query Frame = 3
Query:   84 LFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFISYAE--KAIKLKISGLLIAVFLVFLAIVFTSMEVFDSNGRRLF-VGYLSVASLISMFASPLFIIKLVIKTRSVEFMPXXXXXXXXXXXXXXXAYGMFKDDPFIYVPNGIGTLLGIAQVMLYSYY 656
            LF+ P+ T R I+  K+    +GL +I S+LNC   LW    L++    ++  VNS+G +F + YV  +       +A +  +  ++IA  L    I  +     D    R+  +G+LS    + MFASPL  + +VI++++ E M                 +G+  +D +IY+PN + ++L   Q+ L   Y
Sbjct:   24 LFIMPLKTIRLIIEKKNVGTVAGLQFISSVLNCF--LWISYALLTSNTTML-FVNSIGMMFSIYYVFNYWKNINQVRASRDYLKKVMIACVLAITIISISYYNTVDDLDTRISRLGFLSSVVCVLMFASPLEKMAIVIQSKNSEGMIINVAILSLLCGLSWTIFGLLLNDIYIYLPNILASILSFVQLTLIKLY 214          
BLAST of EY664774 vs. ExPASy Swiss-Prot
Match: R1AP1_XENTR (RAG1-activating protein 1 homolog OS=Xenopus tropicalis GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.307e-12
Identity = 52/196 (26.53%), Postives = 97/196 (49.49%), Query Frame = 3
Query:   69 IFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFISYAEKAIKLKISGLLIAVFLVFLAIVFTSMEVFDSNGRRLFVGYLSVASLISMFASPLFIIKLVIKTRSVEFMPXXXXXXXXXXXXXXXAYGMFKDDPFIYVPNGIGTLLGIAQVMLYSYY 656
            +F   +F S +   R ++  +S E    LP++ + LN L   +YG  L   G +++  VN +GA  Q +Y++ +I Y+ +  +  +S +L+++ ++FLA  + ++   D N R   +G       ISM+ SPL  +  +IK++S + +                 YG  + D +I VPN  G +  + +  L+S Y
Sbjct:   13 VFTLGMFSSGLSDLRVMVAKRSVENIQFLPFLTTDLNNLGWFYYGY-LKGDGTLII--VNLIGASLQTLYMAAYILYSLER-RYVVSQVLVSLGVLFLAHCYFTLWTPDINSRLNQLGLFCSIFTISMYLSPLADLAQIIKSKSTKCLSFPLTVATFLTSTSWVLYGWVQSDLYITVPNFPGIVTSLLRFWLFSRY 204          
BLAST of EY664774 vs. ExPASy Swiss-Prot
Match: R1AP1_XENLA (RAG1-activating protein 1 homolog OS=Xenopus laevis GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.465e-11
Identity = 47/196 (23.98%), Postives = 95/196 (48.47%), Query Frame = 3
Query:   69 IFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFISYAEKAIKLKISGLLIAVFLVFLAIVFTSMEVFDSNGRRLFVGYLSVASLISMFASPLFIIKLVIKTRSVEFMPXXXXXXXXXXXXXXXAYGMFKDDPFIYVPNGIGTLLGIAQVMLYSYY 656
            +F   +F S +   R ++  +S E    LP++ + LN L   +YG  L   G +++  VN +GA  Q +Y+  ++ Y+ +  +   S +L+++ ++ L   + ++ + D N R   +G       ISM+ SPL  +  +I+++S + +                 YG+ + D +I VPN  G +  + +  L+S +
Sbjct:   13 VFTLGMFSSGLSDLRVMVAQRSVENIQYLPFLTTDLNNLGWFYYGY-LKGDGTLMI--VNVIGASLQSLYMGAYLLYSPER-RYVGSQVLVSLGVLLLGYCYFTLWILDLNSRLNQLGLFCSVFTISMYLSPLADLAQIIRSKSTKCLSFPLTVATFLTSSSWVLYGLVQSDLYITVPNFPGIVTSLVRFWLFSQF 204          
BLAST of EY664774 vs. ExPASy Swiss-Prot
Match: R1AP1_MOUSE (RAG1-activating protein 1 OS=Mus musculus GN=Rag1ap1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.465e-11
Identity = 55/197 (27.92%), Postives = 94/197 (47.72%), Query Frame = 3
Query:   69 IFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFISYA-EKAIKLKISGLLIAVFLVFLAIVFTSMEVFDSNGRRLFVGYLSVASLISMFASPLFIIKLVIKTRSVEFMPXXXXXXXXXXXXXXXAYGMFKDDPFIYVPNGIGTLLGIAQVMLYSYY 656
            +F   +F + +   R + R +S +    LP++ + +N L  L YG+ L   G +++  VNSVGAV Q +Y+  ++ Y+ +K   L  +  L+AV L  L   +  + V D   R   +G       ISM+ SPL  +  +++T+S + +                 YG    DP+I VPN  G L  + ++ L+  Y
Sbjct:   17 LFTLGMFSTGLSDLRHMQRTRSVDNIQFLPFLTTDVNNLSWLSYGV-LKGDGTLII--VNSVGAVLQTLYILAYLHYSPQKHGVLLQTATLLAVLL--LGYGYFWLLVPDLEARLQQLGLFCSVFTISMYLSPLADLAKIVQTKSTQRLSFSLTIATLFCSASWSIYGFRLRDPYITVPNLPGILTSLIRLGLFCKY 208          
BLAST of EY664774 vs. ExPASy Swiss-Prot
Match: R1AP1_DANRE (RAG1-activating protein 1 homolog OS=Danio rerio GN=rag1ap1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 49/209 (23.44%), Postives = 98/209 (46.89%), Query Frame = 3
Query:   69 IFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFISYAEKAIKLKISGLLIAVFLVFLAIVFTSMEVFDSNGRRLFVGYLSVASLISMFASPLFIIKLVIKTRSVEFMPXXXXXXXXXXXXXXXAYGMFKDDPFIYVPNGIGTLLGIAQVMLYSYYSTKSGEVSRQPLI 695
            IF   +F + +   +++   +S +    LP++ + LN L  L+YG+ L   G ++   VN +GA  Q +Y++ +  Y ++  ++    LL+ V ++ +A V+ S+ +     +   +G       ISM+ SPL  +  +++T+SVE +                 YG+   D +I VPN  G    + +  L+ ++     ++    LI
Sbjct:   13 IFTVGMFTTGLTDLKKMKATQSADNVQFLPFLTTCLNNLGWLYYGL-LKGDGTVIF--VNIIGAFLQTVYIATYCHYTKEKRRVYTQTLLM-VSVLCVAWVYFSLVISPGEAQLSQLGLTCSVFTISMYLSPLADLLDIMRTKSVERLSFSLTVATFFTSTSWTLYGLQLGDYYIMVPNTPGIFTSLIRFFLFWWFGAVIPQIPSYKLI 217          
The following BLAST results are available for this feature:
BLAST of EY664774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RPG1_ARATH1.642e-3135.48Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis tha... [more]
R1AP1_DROME1.396e-1429.08RAG1-activating protein 1 homolog OS=Drosophila me... [more]
R1AP1_DROPS2.382e-1426.29RAG1-activating protein 1 homolog OS=Drosophila ps... [more]
R1AP1_DICDI9.051e-1427.84RAG1-activating protein 1 homolog OS=Dictyostelium... [more]
R1AP1_XENTR1.307e-1226.53RAG1-activating protein 1 homolog OS=Xenopus tropi... [more]
R1AP1_XENLA2.465e-1123.98RAG1-activating protein 1 homolog OS=Xenopus laevi... [more]
R1AP1_MOUSE2.465e-1127.92RAG1-activating protein 1 OS=Mus musculus GN=Rag1a... [more]
R1AP1_DANRE9.366e-1123.44RAG1-activating protein 1 homolog OS=Danio rerio G... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-070-C09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664774 ID=EY664774; Name=EY664774; organism=Citrus sinensis; type=EST; length=879bp
AGATGTTTTCAGTTGGGATTTCTTCAATTTACTCAGGTTGTAGTGTTGCA
GCTGGCGTTACTGGGAACATATTTGCTTTTGTATTGTTTGTATCGCCCAT
ACCTACATTCAGGAGAATTTTGAGAAACAAGTCAACAGAACAATTCTCAG
GATTGCCTTACATCTGTTCTCTCTTGAATTGCTTGATTACCCTTTGGTAT
GGCATGCCTCTTGTATCCCCTGGTATTATATTAGTCGCTACAGTGAATTC
AGTTGGAGCAGTTTTCCAGTTGATTTATGTTAGCATCTTCATTTCATATG
CTGAAAAAGCTATAAAGCTGAAGATATCTGGATTATTGATAGCAGTTTTT
TTAGTATTTCTTGCCATAGTCTTCACGAGCATGGAAGTTTTTGACTCCAA
TGGGCGGCGGCTTTTTGTTGGATATTTGAGTGTTGCTTCTCTCATTTCTA
TGTTTGCTTCGCCATTATTCATTATTAAGTTAGTCATCAAGACGAGGAGC
GTTGAATTCATGCCCTTTTATCTTTCTCTTTCAAATTTCTTGATGAGTCT
CTCCTTCCTAGCTTATGGAATGTTCAAGGATGACCCTTTCATTTATGTCC
CAAATGGAATTGGAACACTTCTGGGGATTGCTCAAGTGATGTTGTATTCC
TACTATAGCACTAAATCCGGTGAAGTCTCAAGACAACCCCTGATCGATTC
ATTTGCATAAATTAATGTGAAAATCATGTGTAGCAGAGAAGTTAGCGATC
AGCATCTGTATAATCAGTAATTCAGTGACTTGATTATTCTAAAGCTCGAA
TTCCTTTGGAATCTANGCGCTTACTACTTTGAGTCTGAGGGCAGCAATGT
AGACTGGTAAATGCTATTTAGACTTTNCA
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