CX672346

Overview
NameCX672346
Unique NameCX672346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7538 contig Csv1_Contig7538:106..965. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: WDR18_BOVIN (WD repeat-containing protein 18 OS=Bos taurus GN=WDR18 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.930e-33
Identity = 86/245 (35.10%), Postives = 132/245 (53.88%), Query Frame = 2
Query:  101 MELLIASSSVADA-GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIY 829
            ME+ + + S A       W+L SGA  L Y+   + P GLA +   +L ++QL          I  W    K Q++ K +   P+  +  + +G Y+  G  S +IY+WEV++G LL     HY+ V+CL F+ D S  ISG +D  V  WSL +V +   S+  +    H ++ HTL ITD+  G+GG  A + +AS D+T K+W +  G LL +++F   I A+ +D AEH  + G  DGSI+
Sbjct:    5 MEVAVCTDSAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL------GKNYICAWELQRKDQLQQKIMCPGPVTCLTTSPNGLYVLAG-ISENIYLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFISGGKDCLVLAWSLCSVLQADPSRTPAPR--HVWSRHTLPITDLHCGFGGPLARVATASLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCGGSDGSIF 240          
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: WDR18_RAT (WD repeat-containing protein 18 OS=Rattus norvegicus GN=Wdr18 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.214e-31
Identity = 82/247 (33.20%), Postives = 132/247 (53.44%), Query Frame = 2
Query:  101 MELLIASSSVADA-GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS---KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIY 829
            ME+++ + S A       W+L SGA  L Y+   + P GLA +   +L ++Q         G     +W    K Q++ K +   P+  +    +G Y+  G  +  IY+WEV++G LL     HY+ V+CL F+ DGS  +S  +D  V  WSL +V +   S+  +    H ++ HTL ITD+  G+GG  A + +AS D+T K+W++  G LL +++F   I ++ +D AEH  + G  DGSI+
Sbjct:    5 MEVVVCTDSAAPLWSCMVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ--------QGKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVSTGNLLVILSRHYQDVSCLKFTGDGSHFVSAGKDCLVLAWSLCSVLQADPSRILAPR--HVWSQHTLPITDLHCGFGGPMARVATASLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYIFCGGSDGSIF 240          
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: WDR18_HUMAN (WD repeat-containing protein 18 OS=Homo sapiens GN=WDR18 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.614e-31
Identity = 83/246 (33.74%), Postives = 133/246 (54.07%), Query Frame = 2
Query:  101 MELLIASSSVADAGIGC--WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIY 829
            ME+ + + S A     C  W+L SGA  L Y+   + P GLA +   +L ++QL          I  W    K Q++ K +   P+  + A+ +G Y+  G  +  I++WEV++G LL     HY+ V+CL F+ D S  ISG +D  V +WSL +V +   S+  +    H ++ H L ITD+  G+GG  A + ++S D+T K+W +  G LL +++F   I A+ +D AEH  + G  +GSI+
Sbjct:    5 MEVAVCTDSAAPMW-SCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL------GKNYISAWELQRKDQLQQKIMCPGPVTCLTASPNGLYVLAG-VAESIHLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQADPSRIPAPR--HVWSHHALPITDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCGGSEGSIF 240          
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: WDR18_MOUSE (WD repeat-containing protein 18 OS=Mus musculus GN=Wdr18 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.342e-30
Identity = 80/247 (32.39%), Postives = 130/247 (52.63%), Query Frame = 2
Query:  101 MELLIASSSVADA-GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS---KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIY 829
            ME+++ + + A       W+L SGA  L Y+   + P GLA +   +L ++Q         G     +W    K Q++ K +   P+  +    +G Y+  G  +  IY+WEV +G LL     HY+ V+CL F+ DGS  +S  +D     WSL +V +   S+  +    H ++ HTL ITD+  G+GG  A + +AS D+T K+W++  G LL +++F   I ++ +D AEH  + G  DGSI+
Sbjct:    5 MEVVVCTDAAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ--------QGKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVCTGNLLVILSRHYQDVSCLKFTGDGSHFVSAGKDCLALAWSLCSVLQADPSRILAPR--HVWSQHTLPITDLHCGFGGPMARVATASLDQTVKLWAISSGDLLLSVLFDMGITSVTMDLAEHHIFCGGSDGSIF 240          
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: IPI3_SCHPO (Pre-rRNA-processing protein crb3/ipi3 OS=Schizosaccharomyces pombe GN=crb3 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.438e-24
Identity = 74/258 (28.68%), Postives = 128/258 (49.61%), Query Frame = 2
Query:  101 MELLIASSSVAD---AGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEE---CESQRASHLYLHSFTGHTLRITDIVIGYGG-VSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES 853
            MELL++     +   + + C +L +G     ++  +SP     C     L S+Q   +P  +       ++ K  ++   +  E +  + ++  G+++A G + G++Y+W + SG L+  + AHY+ +T L FS DG  L + S DG V  W + T+ ++    E+  +S   +  F+GH   I  + IG G  VS  + +ASED T ++W +  G LL  I  PS    + +DP+E V Y G+  G I+I      S
Sbjct:    1 MELLLSGCEAIEGEPSNVLCHNLHTGTLVSTFRQ-SSPAKNATCTTLNHLLSAQ-HTRPQLN-----IHNFGKEILDQSIILPEILICVQSSPCGSWLAAGTEKGNLYIWSLKSGALIYFFRAHYQPLTILKFSNDGMVLFTASNDGDVFAWLISTLVDQNSTFETSNSSVKAISHFSGHKRSIVSMEIGPGPIVSGRLYTASEDNTIRIWDVSTGNLLTTIALPSTPSCMTVDPSERVVYVGNEKGIIWIPLYTGSS 251          
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: IPI3_DEBHA (Pre-rRNA-processing protein IPI3 OS=Debaryomyces hansenii GN=IPI3 PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 9.319e-24
Identity = 60/164 (36.59%), Postives = 91/164 (55.49%), Query Frame = 2
Query:  383 IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIW---SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV--SATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS 859
            +AGG ++G IY+WE+ASG LL    AHY+A+T + FSQ G+FL+SGS D    +W    L++V+ + E    +     SFT H+L ITD+ I   G+     + + S D T +++ ++   LL   V PS I+ +  DPA    Y G  +G I    L   +P+
Sbjct:  121 LAGGSKTGKIYVWELASGNLLCVKEAHYQAITAIKFSQCGTFLVSGSSDARCMVWRTSDLISVYNKDEESSINIKPFASFTDHSLPITDLAISEAGIISDLRLYTVSRDSTLRIYDIMTKSLLTTFVLPSGIECVTKDPANRACYVGLSNGLIRTVPLYQINPN 284          
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: IPI3_PICGU (Pre-rRNA-processing protein IPI3 OS=Pichia guilliermondii GN=IPI3 PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.538e-21
Identity = 63/204 (30.88%), Postives = 104/204 (50.98%), Query Frame = 2
Query:  269 SASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGT---------------YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSL--LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS-ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSI 826
            + S   I  +SW K   + +    EP+  +A   H +                +AGG  SG +Y+WE++SG L+    AHY+A+  L FS+ G++L+SG  D    +W    L   ++ E+Q+ +     +F  HTL +TDI +  G  S   + S+S+D T + + +  G+L+   V P  ++ +A+DPA    YAG  DG+I
Sbjct:   54 AGSKPLITVYSWGKESPDQRIPVPEPLTCMALCKHPSNEKINHKVPTFQLPWLLAGGSASGKLYIWELSSGNLVCVKEAHYQAINVLKFSECGTYLVSGGADARCSVWKTLDLVTIDDPETQKTASAL--TFMDHTLAVTDIWLTTGIRSDIRLYSSSKDGTVRNYDITSGKLITTFVLPLSVECLAVDPAGRACYAGLSDGTI 255          
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: IPI3_YARLI (Pre-rRNA-processing protein IPI3 OS=Yarrowia lipolytica GN=IPI3 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.314e-21
Identity = 76/261 (29.12%), Postives = 136/261 (52.11%), Query Frame = 2
Query:  104 ELLIASSSVADAGIGCWDLESGAEQLRYKSCASPPHGLACV-----GQRFLASSQLREQPSASSGSILY-WSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT-IVSASEDRTCKVWSLLKGRLLRNIVFPS--VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS 859
            EL+I +++     +   DL SG     +K+  + P+    +     G   L S+Q +       G++++ ++W++  V+ + +  E +  +AA++ GT++AGG  SG +++WE+ASG+L+     HY+AVT L F+ DG  L S S+D  V  WSL+T+  + +  +       ++T H L + D+V+G G    T + + S D+T ++W +    LL  I  P+      +A+D  E   + G   G+I   +L   SPS
Sbjct:    3 ELIIYTTNKGACAV---DLHSGNNITHFKNDETAPNLSVFLTNTPSGNPLLFSAQTK-------GAMMHVYNWNRESVDQQIVLPEKLSCLAASTCGTWLAGGSASGRLFVWELASGKLVFSREVHYQAVTKLAFT-DG-LLFSTSKDARVLGWSLVTMASDPKDCQP----CITWTEHNLGVVDLVVGGGPTRDTRVFTVSTDKTVRIWDVSSTALLTTITLPAAETPTTLAVDQLERTLFVGCASGNILSVSLYDVSPS 247          
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: IPI3_USTMA (Pre-rRNA-processing protein IPI3 OS=Ustilago maydis GN=IPI3 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.806e-20
Identity = 63/202 (31.19%), Postives = 102/202 (50.50%), Query Frame = 2
Query:  263 QPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWS---LLTVFEECESQRASHLY----LHSFTGHTLRITDIVIGYGGV--SATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG----SRDGSIY 829
            Q  ++  ++  +SW +  +  + +    +  IA + +G  +AGG   G I +W++A+G LL  + AHYR+VT L ++ DG+ L++GSED  + +WS   LL   ++  S   S  +      +   H L ITD+ I  G     A ++S+S D + K+W L    LL   VF   I  + LD  E  F+A     S D  +Y
Sbjct:   78 QLESNKAALNIFSWQRDHLLQRIILPSKLSCIACSPNGDLVAGGSFDGRILLWQIATGDLLASFDAHYRSVTVLKWTCDGAGLLTGSEDARILVWSLAGLLAPHDQTSSSITSSEHNPAPYCTLADHNLAITDLDISSGRFPHQAMVLSSSSDASVKLWDLRTRSLLSTFVFEQPIHRVVLDCTERFFFAATAPTSSDNLVY 279          
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: IPI3_PICST (Pre-rRNA-processing protein IPI3 OS=Pichia stipitis GN=IPI3 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.664e-20
Identity = 58/166 (34.94%), Postives = 93/166 (56.02%), Query Frame = 2
Query:  383 IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIW---SLLTVF--EECESQRASHLYLHSFTGHTLRITDIVIGYGGV--SATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS 859
            +AGG +SG IY+WE++SG LL    AHY+ VT + FS+ G+FL++GS+D    +W    L+ VF  +  ES R    YL + T +TL +TD+V+   GV     + + S D T +++ ++  +LL   +    I+++  DPA    Y G  +G I    L   +P+
Sbjct:  122 LAGGSKSGKIYVWELSSGSLLCVKEAHYQNVTVVKFSKCGTFLVAGSDDARCTVWKTLDLIAVFDGDNDESSRNFKPYL-AITDNTLAVTDLVLNEPGVINDLKLYTVSRDNTLRIYDIITKQLLTTFILSEAIESVVADPAGRAVYVGLSNGLIRTIPLYNINPN 286          
The following BLAST results are available for this feature:
BLAST of CX672346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
WDR18_BOVIN4.930e-3335.10WD repeat-containing protein 18 OS=Bos taurus GN=W... [more]
WDR18_RAT1.214e-3133.20WD repeat-containing protein 18 OS=Rattus norvegic... [more]
WDR18_HUMAN4.614e-3133.74WD repeat-containing protein 18 OS=Homo sapiens GN... [more]
WDR18_MOUSE1.342e-3032.39WD repeat-containing protein 18 OS=Mus musculus GN... [more]
IPI3_SCHPO1.438e-2428.68Pre-rRNA-processing protein crb3/ipi3 OS=Schizosac... [more]
IPI3_DEBHA9.319e-2436.59Pre-rRNA-processing protein IPI3 OS=Debaryomyces h... [more]
IPI3_PICGU2.538e-2130.88Pre-rRNA-processing protein IPI3 OS=Pichia guillie... [more]
IPI3_YARLI3.314e-2129.12Pre-rRNA-processing protein IPI3 OS=Yarrowia lipol... [more]
IPI3_USTMA2.806e-2031.19Pre-rRNA-processing protein IPI3 OS=Ustilago maydi... [more]
IPI3_PICST3.664e-2034.94Pre-rRNA-processing protein IPI3 OS=Pichia stipiti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_16D07_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-16D07-H14-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672346 ID=CX672346; Name=CX672346; organism=Citrus sinensis; type=EST; length=860bp
CCGTTACAAAAATATATATACGTGATCTTGATCAAGAACTAGCCGGCAAC
CGCACTTCAAATGTGAAAAAAAACAAAACAAACTTGTCAAATCAATCAAA
ATGGAGTTGCTAATCGCATCATCGTCAGTCGCCGATGCCGGTATCGGGTG
CTGGGACCTAGAATCAGGTGCCGAGCAGCTCCGATACAAATCGTGCGCCT
CACCTCCGCACGGACTCGCTTGTGTGGGCCAACGCTTCCTCGCCTCCTCG
CAGCTTCGCGAACAACCTTCCGCCTCGTCCGGTTCCATCCTTTACTGGTC
CTGGTCCAAGCCTCAGGTAGAAGTGAAGAGCTTACCAGCTGAGCCGATTA
AGCCGATTGCTGCTAATAGCCACGGCACCTATATTGCTGGTGGGGGTCAA
TCGGGAGATATCTACATGTGGGAGGTTGCAAGTGGCAGATTATTAAAGAA
GTGGCACGCGCATTATAGGGCCGTTACTTGCTTGGTTTTTTCACAAGACG
GTTCATTTCTGATTTCTGGGTCTGAGGATGGATGTGTTAGAATTTGGTCA
CTTCTAACGGTATTTGAGGAGTGTGAAAGCCAGCGGGCAAGCCATCTGTA
TTTGCATAGTTTTACTGGGCACACTCTGCGTATAACTGATATTGTTATTG
GCTATGGAGGAGTTAGTGCAACTATAGTGTCAGCTTCTGAGGATCGAACT
TGCAAGGTGTGGAGCCTATTGAAGGGAAGATTGTTGAGAAATATTGTATT
CCCTTCAGTAATTGATGCAATTGCATTGGACCCCGCTGAACATGTCTTTT
ATGCCGGCAGTAGAGATGGCAGTATCTATATTGCTGCACTTAATGCTGAA
AGTCCCTCTA
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