CX672346
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: WDR18_BOVIN (WD repeat-containing protein 18 OS=Bos taurus GN=WDR18 PE=2 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 4.930e-33 Identity = 86/245 (35.10%), Postives = 132/245 (53.88%), Query Frame = 2 Query: 101 MELLIASSSVADA-GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIY 829 ME+ + + S A W+L SGA L Y+ + P GLA + +L ++QL I W K Q++ K + P+ + + +G Y+ G S +IY+WEV++G LL HY+ V+CL F+ D S ISG +D V WSL +V + S+ + H ++ HTL ITD+ G+GG A + +AS D+T K+W + G LL +++F I A+ +D AEH + G DGSI+ Sbjct: 5 MEVAVCTDSAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL------GKNYICAWELQRKDQLQQKIMCPGPVTCLTTSPNGLYVLAG-ISENIYLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFISGGKDCLVLAWSLCSVLQADPSRTPAPR--HVWSRHTLPITDLHCGFGGPLARVATASLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCGGSDGSIF 240
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: WDR18_RAT (WD repeat-containing protein 18 OS=Rattus norvegicus GN=Wdr18 PE=2 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.214e-31 Identity = 82/247 (33.20%), Postives = 132/247 (53.44%), Query Frame = 2 Query: 101 MELLIASSSVADA-GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS---KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIY 829 ME+++ + S A W+L SGA L Y+ + P GLA + +L ++Q G +W K Q++ K + P+ + +G Y+ G + IY+WEV++G LL HY+ V+CL F+ DGS +S +D V WSL +V + S+ + H ++ HTL ITD+ G+GG A + +AS D+T K+W++ G LL +++F I ++ +D AEH + G DGSI+ Sbjct: 5 MEVVVCTDSAAPLWSCMVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ--------QGKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVSTGNLLVILSRHYQDVSCLKFTGDGSHFVSAGKDCLVLAWSLCSVLQADPSRILAPR--HVWSQHTLPITDLHCGFGGPMARVATASLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYIFCGGSDGSIF 240
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: WDR18_HUMAN (WD repeat-containing protein 18 OS=Homo sapiens GN=WDR18 PE=1 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 4.614e-31 Identity = 83/246 (33.74%), Postives = 133/246 (54.07%), Query Frame = 2 Query: 101 MELLIASSSVADAGIGC--WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIY 829 ME+ + + S A C W+L SGA L Y+ + P GLA + +L ++QL I W K Q++ K + P+ + A+ +G Y+ G + I++WEV++G LL HY+ V+CL F+ D S ISG +D V +WSL +V + S+ + H ++ H L ITD+ G+GG A + ++S D+T K+W + G LL +++F I A+ +D AEH + G +GSI+ Sbjct: 5 MEVAVCTDSAAPMW-SCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL------GKNYISAWELQRKDQLQQKIMCPGPVTCLTASPNGLYVLAG-VAESIHLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQADPSRIPAPR--HVWSHHALPITDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCGGSEGSIF 240
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: WDR18_MOUSE (WD repeat-containing protein 18 OS=Mus musculus GN=Wdr18 PE=2 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.342e-30 Identity = 80/247 (32.39%), Postives = 130/247 (52.63%), Query Frame = 2 Query: 101 MELLIASSSVADA-GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS---KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIY 829 ME+++ + + A W+L SGA L Y+ + P GLA + +L ++Q G +W K Q++ K + P+ + +G Y+ G + IY+WEV +G LL HY+ V+CL F+ DGS +S +D WSL +V + S+ + H ++ HTL ITD+ G+GG A + +AS D+T K+W++ G LL +++F I ++ +D AEH + G DGSI+ Sbjct: 5 MEVVVCTDAAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ--------QGKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVCTGNLLVILSRHYQDVSCLKFTGDGSHFVSAGKDCLALAWSLCSVLQADPSRILAPR--HVWSQHTLPITDLHCGFGGPMARVATASLDQTVKLWAISSGDLLLSVLFDMGITSVTMDLAEHHIFCGGSDGSIF 240
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: IPI3_SCHPO (Pre-rRNA-processing protein crb3/ipi3 OS=Schizosaccharomyces pombe GN=crb3 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.438e-24 Identity = 74/258 (28.68%), Postives = 128/258 (49.61%), Query Frame = 2 Query: 101 MELLIASSSVAD---AGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEE---CESQRASHLYLHSFTGHTLRITDIVIGYGG-VSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES 853 MELL++ + + + C +L +G ++ +SP C L S+Q +P + ++ K ++ + E + + ++ G+++A G + G++Y+W + SG L+ + AHY+ +T L FS DG L + S DG V W + T+ ++ E+ +S + F+GH I + IG G VS + +ASED T ++W + G LL I PS + +DP+E V Y G+ G I+I S Sbjct: 1 MELLLSGCEAIEGEPSNVLCHNLHTGTLVSTFRQ-SSPAKNATCTTLNHLLSAQ-HTRPQLN-----IHNFGKEILDQSIILPEILICVQSSPCGSWLAAGTEKGNLYIWSLKSGALIYFFRAHYQPLTILKFSNDGMVLFTASNDGDVFAWLISTLVDQNSTFETSNSSVKAISHFSGHKRSIVSMEIGPGPIVSGRLYTASEDNTIRIWDVSTGNLLTTIALPSTPSCMTVDPSERVVYVGNEKGIIWIPLYTGSS 251
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: IPI3_DEBHA (Pre-rRNA-processing protein IPI3 OS=Debaryomyces hansenii GN=IPI3 PE=3 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 9.319e-24 Identity = 60/164 (36.59%), Postives = 91/164 (55.49%), Query Frame = 2 Query: 383 IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIW---SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV--SATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS 859 +AGG ++G IY+WE+ASG LL AHY+A+T + FSQ G+FL+SGS D +W L++V+ + E + SFT H+L ITD+ I G+ + + S D T +++ ++ LL V PS I+ + DPA Y G +G I L +P+ Sbjct: 121 LAGGSKTGKIYVWELASGNLLCVKEAHYQAITAIKFSQCGTFLVSGSSDARCMVWRTSDLISVYNKDEESSINIKPFASFTDHSLPITDLAISEAGIISDLRLYTVSRDSTLRIYDIMTKSLLTTFVLPSGIECVTKDPANRACYVGLSNGLIRTVPLYQINPN 284
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: IPI3_PICGU (Pre-rRNA-processing protein IPI3 OS=Pichia guilliermondii GN=IPI3 PE=3 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 2.538e-21 Identity = 63/204 (30.88%), Postives = 104/204 (50.98%), Query Frame = 2 Query: 269 SASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGT---------------YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSL--LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS-ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSI 826 + S I +SW K + + EP+ +A H + +AGG SG +Y+WE++SG L+ AHY+A+ L FS+ G++L+SG D +W L ++ E+Q+ + +F HTL +TDI + G S + S+S+D T + + + G+L+ V P ++ +A+DPA YAG DG+I Sbjct: 54 AGSKPLITVYSWGKESPDQRIPVPEPLTCMALCKHPSNEKINHKVPTFQLPWLLAGGSASGKLYIWELSSGNLVCVKEAHYQAINVLKFSECGTYLVSGGADARCSVWKTLDLVTIDDPETQKTASAL--TFMDHTLAVTDIWLTTGIRSDIRLYSSSKDGTVRNYDITSGKLITTFVLPLSVECLAVDPAGRACYAGLSDGTI 255
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: IPI3_YARLI (Pre-rRNA-processing protein IPI3 OS=Yarrowia lipolytica GN=IPI3 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 3.314e-21 Identity = 76/261 (29.12%), Postives = 136/261 (52.11%), Query Frame = 2 Query: 104 ELLIASSSVADAGIGCWDLESGAEQLRYKSCASPPHGLACV-----GQRFLASSQLREQPSASSGSILY-WSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT-IVSASEDRTCKVWSLLKGRLLRNIVFPS--VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS 859 EL+I +++ + DL SG +K+ + P+ + G L S+Q + G++++ ++W++ V+ + + E + +AA++ GT++AGG SG +++WE+ASG+L+ HY+AVT L F+ DG L S S+D V WSL+T+ + + + ++T H L + D+V+G G T + + S D+T ++W + LL I P+ +A+D E + G G+I +L SPS Sbjct: 3 ELIIYTTNKGACAV---DLHSGNNITHFKNDETAPNLSVFLTNTPSGNPLLFSAQTK-------GAMMHVYNWNRESVDQQIVLPEKLSCLAASTCGTWLAGGSASGRLFVWELASGKLVFSREVHYQAVTKLAFT-DG-LLFSTSKDARVLGWSLVTMASDPKDCQP----CITWTEHNLGVVDLVVGGGPTRDTRVFTVSTDKTVRIWDVSSTALLTTITLPAAETPTTLAVDQLERTLFVGCASGNILSVSLYDVSPS 247
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: IPI3_USTMA (Pre-rRNA-processing protein IPI3 OS=Ustilago maydis GN=IPI3 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.806e-20 Identity = 63/202 (31.19%), Postives = 102/202 (50.50%), Query Frame = 2 Query: 263 QPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWS---LLTVFEECESQRASHLY----LHSFTGHTLRITDIVIGYGGV--SATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG----SRDGSIY 829 Q ++ ++ +SW + + + + + IA + +G +AGG G I +W++A+G LL + AHYR+VT L ++ DG+ L++GSED + +WS LL ++ S S + + H L ITD+ I G A ++S+S D + K+W L LL VF I + LD E F+A S D +Y Sbjct: 78 QLESNKAALNIFSWQRDHLLQRIILPSKLSCIACSPNGDLVAGGSFDGRILLWQIATGDLLASFDAHYRSVTVLKWTCDGAGLLTGSEDARILVWSLAGLLAPHDQTSSSITSSEHNPAPYCTLADHNLAITDLDISSGRFPHQAMVLSSSSDASVKLWDLRTRSLLSTFVFEQPIHRVVLDCTERFFFAATAPTSSDNLVY 279
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: IPI3_PICST (Pre-rRNA-processing protein IPI3 OS=Pichia stipitis GN=IPI3 PE=3 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 3.664e-20 Identity = 58/166 (34.94%), Postives = 93/166 (56.02%), Query Frame = 2 Query: 383 IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIW---SLLTVF--EECESQRASHLYLHSFTGHTLRITDIVIGYGGV--SATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS 859 +AGG +SG IY+WE++SG LL AHY+ VT + FS+ G+FL++GS+D +W L+ VF + ES R YL + T +TL +TD+V+ GV + + S D T +++ ++ +LL + I+++ DPA Y G +G I L +P+ Sbjct: 122 LAGGSKSGKIYVWELSSGSLLCVKEAHYQNVTVVKFSKCGTFLVAGSDDARCTVWKTLDLIAVFDGDNDESSRNFKPYL-AITDNTLAVTDLVLNEPGVINDLKLYTVSRDNTLRIYDIITKQLLTTFILSEAIESVVADPAGRAVYVGLSNGLIRTIPLYNINPN 286 The following BLAST results are available for this feature:
BLAST of CX672346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
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Sequences
The
following sequences are available for this feature:
EST sequence >CX672346 ID=CX672346; Name=CX672346; organism=Citrus sinensis; type=EST; length=860bpback to top |