CX672339

Overview
NameCX672339
Unique NameCX672339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX672339_ssr424 microsatellite CX672339_ssr424:424..435. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX672339 vs. ExPASy Swiss-Prot
Match: MPCP_CHOFU (Phosphate carrier protein, mitochondrial OS=Choristoneura fumiferana PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.880e-34
Identity = 74/115 (64.35%), Postives = 88/115 (76.52%), Query Frame = -1
Query:  479 QIPYTMMKFASFETIVEMIYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFV 823
            QIPYTMMKFA FE  VE++YKH VP P+ +CSK  QL ++FA GY+AGVFCAIVSHPAD +VS LN  K ATVG  V KLG  G++ +GL  RI+MIGTLT  QW IYDA KV++
Sbjct:  212 QIPYTMMKFACFEKTVELLYKHVVPKPRAECSKGEQLVVTFAAGYIAGVFCAIVSHPADTVVSKLNQDKTATVGSIVGKLGFAGVW-KGLGPRIIMIGTLTALQWFIYDAVKVWL 325          
BLAST of CX672339 vs. ExPASy Swiss-Prot
Match: MPCP_BOVIN (Phosphate carrier protein, mitochondrial OS=Bos taurus GN=SLC25A3 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.219e-33
Identity = 69/117 (58.97%), Postives = 88/117 (75.21%), Query Frame = -1
Query:  473 QIPYTMMKFASFETIVEMIYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 823
            QIPYTMMKFA FE  VE +YK  VP P+ +CSKP QL ++F  GY+AGVFCAIVSHPAD++VS LN  KG++  + +K+LG  G++ +GL  RI+MIGTLT  QW IYD+ KV+  L
Sbjct:  227 QIPYTMMKFACFERTVEALYKFVVPKPRSECSKPEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSSASEVLKRLGFRGVW-KGLFARIIMIGTLTALQWFIYDSVKVYFRL 342          
BLAST of CX672339 vs. ExPASy Swiss-Prot
Match: MPCP_PONAB (Phosphate carrier protein, mitochondrial OS=Pongo abelii GN=SLC25A3 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.047e-33
Identity = 69/117 (58.97%), Postives = 87/117 (74.36%), Query Frame = -1
Query:  473 QIPYTMMKFASFETIVEMIYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 823
            QIPYTMMKFA FE  VE +YK  VP P+ +CSKP QL ++F  GY+AGVFCAIVSHPAD++VS LN  KG++    +K+LG  G++ +GL  RI+MIGTLT  QW IYD+ KV+  L
Sbjct:  226 QIPYTMMKFACFERTVEALYKFVVPKPRSECSKPEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSSASLVLKRLGFKGVW-KGLFARIIMIGTLTALQWFIYDSVKVYFRL 341          
BLAST of CX672339 vs. ExPASy Swiss-Prot
Match: MPCP_HUMAN (Phosphate carrier protein, mitochondrial OS=Homo sapiens GN=SLC25A3 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 6.047e-33
Identity = 69/117 (58.97%), Postives = 87/117 (74.36%), Query Frame = -1
Query:  473 QIPYTMMKFASFETIVEMIYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 823
            QIPYTMMKFA FE  VE +YK  VP P+ +CSKP QL ++F  GY+AGVFCAIVSHPAD++VS LN  KG++    +K+LG  G++ +GL  RI+MIGTLT  QW IYD+ KV+  L
Sbjct:  227 QIPYTMMKFACFERTVEALYKFVVPKPRSECSKPEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSSASLVLKRLGFKGVW-KGLFARIIMIGTLTALQWFIYDSVKVYFRL 342          
BLAST of CX672339 vs. ExPASy Swiss-Prot
Match: MPCP_RAT (Phosphate carrier protein, mitochondrial OS=Rattus norvegicus GN=Slc25a3 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.920e-32
Identity = 67/117 (57.26%), Postives = 86/117 (73.50%), Query Frame = -1
Query:  473 QIPYTMMKFASFETIVEMIYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 823
            QIPYTMMKFA FE  VE +YK  VP P+ +C+K  QL ++F  GY+AGVFCAIVSHPAD++VS LN  KG+T    +++LG  G++ +GL  RI+MIGTLT  QW IYD+ KV+  L
Sbjct:  221 QIPYTMMKFACFERTVEALYKFVVPKPRSECTKAEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSTASQVLQRLGFRGVW-KGLFARIIMIGTLTALQWFIYDSVKVYFRL 336          
BLAST of CX672339 vs. ExPASy Swiss-Prot
Match: MPCP_MOUSE (Phosphate carrier protein, mitochondrial OS=Mus musculus GN=Slc25a3 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.920e-32
Identity = 67/117 (57.26%), Postives = 86/117 (73.50%), Query Frame = -1
Query:  473 QIPYTMMKFASFETIVEMIYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 823
            QIPYTMMKFA FE  VE +YK  VP P+ +C+K  QL ++F  GY+AGVFCAIVSHPAD++VS LN  KG+T    +++LG  G++ +GL  RI+MIGTLT  QW IYD+ KV+  L
Sbjct:  222 QIPYTMMKFACFERTVEALYKFVVPKPRSECTKAEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSTASQVLQRLGFRGVW-KGLFARIIMIGTLTALQWFIYDSVKVYFRL 337          
BLAST of CX672339 vs. ExPASy Swiss-Prot
Match: MPCP_CAEEL (Phosphate carrier protein, mitochondrial OS=Caenorhabditis elegans GN=F01G4.6 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.140e-31
Identity = 69/117 (58.97%), Postives = 85/117 (72.65%), Query Frame = -1
Query:  473 QIPYTMMKFASFETIVEMIYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 823
            QIPYTMMKFA FE  VE +Y++ VP P+ +CSK  QL ++F  GY+AGVFCAIVSHPAD +VS LN    AT G  +KKLG  G++ +GL  RI+MIGTLT  QW IYD+ KV + L
Sbjct:  205 QIPYTMMKFACFEKTVEALYQYVVPKPRAECSKAEQLVVTFVAGYIAGVFCAIVSHPADTVVSKLNQDSQATAGGILKKLGFAGVW-KGLVPRIIMIGTLTALQWFIYDSVKVALNL 320          
BLAST of CX672339 vs. ExPASy Swiss-Prot
Match: MPCP_SCHPO (Probable mitochondrial phosphate carrier protein OS=Schizosaccharomyces pombe GN=SPBC1703.13c PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.792e-30
Identity = 72/122 (59.02%), Postives = 88/122 (72.13%), Query Frame = -1
Query:  476 QIPYTMMKFASFETIVEMIYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAK------GATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVG 823
            QIPYTMMKFASFE IVE +Y + +  PK+  SK  ++GISFAGGY+AGV CAI+SHPAD +VS LN+ K      GA      K++G  GL+  GL +RIVMIGTLTGAQW IYD+FK+  G
Sbjct:  186 QIPYTMMKFASFERIVEALYTY-IGKPKNMYSKAEKIGISFAGGYMAGVLCAIISHPADVMVSKLNSNKKAGEGAGAAAARIYKEIGFSGLW-NGLGVRIVMIGTLTGAQWLIYDSFKIMCG 305          
BLAST of CX672339 vs. ExPASy Swiss-Prot
Match: PIC2_YEAST (Mitochondrial phosphate carrier protein 2 OS=Saccharomyces cerevisiae GN=PIC2 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.721e-25
Identity = 63/123 (51.22%), Postives = 83/123 (67.48%), Query Frame = -1
Query:  473 QIPYTMMKFASFETIVEMIYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAKGATVGDAV------KKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 823
            QIPYTM KF SFE IV+ IY   +P  K++ +   Q+ +SF GGY+AG+ CA VSHPAD +VS +N+ + A    +V      +K+G  GL+  GL +RIVMIGTLT  QW IYD+FK +VGL
Sbjct:  176 QIPYTMCKFTSFEKIVQKIYS-VLPKKKEEMNALQQISVSFVGGYLAGILCAAVSHPADVMVSKINSERKANESMSVASKRIYQKIGFTGLW-NGLMVRIVMIGTLTSFQWLIYDSFKAYVGL 296          
BLAST of CX672339 vs. ExPASy Swiss-Prot
Match: MCFN_DICDI (Mitochondrial substrate carrier family protein N OS=Dictyostelium discoideum GN=mcfN PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.107e-18
Identity = 53/124 (42.74%), Postives = 73/124 (58.87%), Query Frame = -1
Query:  473 QIPYTMMKFASFETIVEMIYKHAVPT--PKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAKG-----ATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 823
            Q+PYTM KFA FE   E +YK    +  PK+  +   +L +S   G VAG+  AIVS PAD ++S +N  K        +G+ +++LG+ GLF  GLP R  M+GTLT  Q+ IYD  K  +GL
Sbjct:  171 QVPYTMAKFAVFEFTAENVYKGLAASGKPKESLTDGQKLSVSLGSGIVAGIVAAIVSQPADTILSKINQEKTDGGVVKAIGNIMRRLGVRGLFL-GLPTRCFMVGTLTAGQFFIYDGIKQMLGL 293          
The following BLAST results are available for this feature:
BLAST of CX672339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
MPCP_CHOFU1.880e-3464.35Phosphate carrier protein, mitochondrial OS=Choris... [more]
MPCP_BOVIN1.219e-3358.97Phosphate carrier protein, mitochondrial OS=Bos ta... [more]
MPCP_PONAB6.047e-3358.97Phosphate carrier protein, mitochondrial OS=Pongo ... [more]
MPCP_HUMAN6.047e-3358.97Phosphate carrier protein, mitochondrial OS=Homo s... [more]
MPCP_RAT3.920e-3257.26Phosphate carrier protein, mitochondrial OS=Rattus... [more]
MPCP_MOUSE3.920e-3257.26Phosphate carrier protein, mitochondrial OS=Mus mu... [more]
MPCP_CAEEL1.140e-3158.97Phosphate carrier protein, mitochondrial OS=Caenor... [more]
MPCP_SCHPO4.792e-3059.02Probable mitochondrial phosphate carrier protein O... [more]
PIC2_YEAST2.721e-2551.22Mitochondrial phosphate carrier protein 2 OS=Sacch... [more]
MCFN_DICDI1.107e-1842.74Mitochondrial substrate carrier family protein N O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_16D04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-16D04-H8-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672339 ID=CX672339; Name=CX672339; organism=Citrus sinensis; type=EST; length=823bp
TTTTTTTTTTTTTTTTTGAAAAGTTTCAAAGGTACTCGCAACAAAAAAAA
CAGCAGTAATGATGATCTAATAATCGTACACTCCACGCATTTGCGAAGAG
AAATTAGGTACTCTCCCCTTGCACATTATTTTGTCACCTATTCATGGGGA
GGATTGCGAGCTGGATATCAGAGTGAAATTTCATGTATAATCTAACTACA
AAAGTTTTCTGATATTTGGATGAAAACAAAACCATCCTCAGCAAAAGCAA
ATCTTAAGCTCGAACAAATAGTTCTCAATTATAAAGAATACTCTGACTTG
AGACACTCAAGCGCCTTCAATTTTGTCACCTATGTTTATTAATCCCTATC
AAGAAGTTCTCCTGGAATCCACAAAACCCAAAATAAAACAATTCTATTTG
GTTGACCTACACCTTTGCAAGCTCAGCAGCAGCAGGGGCAGGAGCAACAG
GAGCAACACCACCAGTGGTTGGCAGTCCCACAAAAACTTTGAATGCATCA
TAGATTCCCCATTGAGCTCCAGTGAGTGTTCCAATCATGACAATACGGAG
AGGAAGCCCACGGGTAAACAGACCCCACAAACCTAGCTTCTTCACAGCAT
CACCAACAGTTGCTCCTTTGGCATTGTTAAGGAAAGAGACAAGATTGTCA
GCAGGATGCGACACAATAGCACAGAAAACACCAGCCACATAACCACCAGC
AAAACTAATTCCAAGCTGCAGAGGTTTGCTGCACTGGTCCTTTGGTGTGG
GAACTGCATGCTTGTAGATCATCTCAACAATGGTTTCAAAAGAAGCAAAC
TTCATCATAGTATATGGAATCTG
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