CX672327

Overview
NameCX672327
Unique NameCX672327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672327 vs. ExPASy Swiss-Prot
Match: SGS3_SOLLC (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 4.278e-67
Identity = 123/198 (62.12%), Postives = 161/198 (81.31%), Query Frame = -3
Query:  270 GKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYS 863
            GK+K KFEMRSY E V N  +QM EDNQQLI+ KN+  K Q  +KALE + S+VSEK R+T+EEN+IV+ +TKM HEQ KEEM+FQEQ FKDQI+IIH+AR  +E+NFEK QQ++RE VKQS AN  + ED+++RAE++AKFI +QDKEMEEFV  R+ L++ H +++ A+RR++WEEEVELE+ FD EL++LMEKYS
Sbjct:  423 GKSKLKFEMRSYKEAVWNPAKQMREDNQQLIWFKNKAAKHQMQAKALEESLSLVSEKHRQTLEENKIVRLKTKMHHEQIKEEMEFQEQFFKDQIKIIHDARTAREDNFEKTQQEQREMVKQSNANTASVEDHRVRAEKVAKFIKLQDKEMEEFVEERENLMRTHDDRIAALRRKYWEEEVELERKFDLELSKLMEKYS 620          
BLAST of CX672327 vs. ExPASy Swiss-Prot
Match: SGS3_ARATH (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.273e-60
Identity = 117/203 (57.64%), Postives = 150/203 (73.89%), Query Frame = -3
Query:  264 GKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKV---KQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTH 863
            GKT+ KFE++SY EMVV ++RQ+SEDNQQL Y KN++ K+ +H+K LE +  I+SEKLR T E+NRIV+QRTKMQHEQN+EEMD  ++ F D I+ IHE RD KEENFE LQQQER KV   +Q   NP + +D + RAEE++ FI  Q+KEMEEFV  R+ LIK   +KM+ M++RH EE  +LEK FD  L QLM K+  H
Sbjct:  419 GKTRLKFELKSYQEMVVKELRQISEDNQQLNYFKNKLSKQNKHAKVLEESLEIMSEKLRRTAEDNRIVRQRTKMQHEQNREEMDAHDRFFMDSIKQIHERRDAKEENFEMLQQQERAKVVGQQQQNINPSSNDDCRKRAEEVSSFIEFQEKEMEEFVEEREMLIKDQEKKMEDMKKRHHEEIFDLEKEFDEALEQLMYKHGLH 621          
BLAST of CX672327 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSJ (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. japonica GN=SGS3 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 7.084e-54
Identity = 106/201 (52.74%), Postives = 147/201 (73.13%), Query Frame = -3
Query:  261 GKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHI 863
            GK++ K+EMRSY+EMVV Q++QMSEDNQQL YLKN++VK+++HSK +E T S+V++KLRETMEEN IV+ + K +H + ++EM +QE+ F DQI  IH+A +EKE  FEKL Q+ER K +QS  +  +TED + R E+I  FI  Q K++EEF A RD+LIK H EK   +++ +  +E ELEK  D  LT LM+K+   I
Sbjct:  400 GKSRLKYEMRSYNEMVVTQMKQMSEDNQQLNYLKNKMVKKEQHSKLVEDTLSVVTQKLRETMEENTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIHKATEEKEIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDKLIKLHEEKKVKLKKEYLAKEFELEKELDTALTSLMDKHKPDI 600          
BLAST of CX672327 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSI (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. indica GN=SGS3 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.516e-53
Identity = 105/201 (52.24%), Postives = 146/201 (72.64%), Query Frame = -3
Query:  261 GKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHI 863
            GK++ K+EMRSY+EMVV Q++QMSEDNQQL YLKN++VK+++HSK +E T S+V++KLRETMEEN IV+ + K +H + ++EM +QE+ F DQI  IH+  +EKE  FEKL Q+ER K +QS  +  +TED + R E+I  FI  Q K++EEF A RD+LIK H EK   +++ +  +E ELEK  D  LT LM+K+   I
Sbjct:  400 GKSRLKYEMRSYNEMVVTQMKQMSEDNQQLNYLKNKMVKKEQHSKLVEDTLSVVTQKLRETMEENTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIHKPTEEKEIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDKLIKLHEEKKVKLKKEYLAKEFELEKELDTALTALMDKHKPDI 600          
BLAST of CX672327 vs. ExPASy Swiss-Prot
Match: SGS3_MAIZE (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Zea mays GN=SGS3 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.294e-47
Identity = 97/206 (47.09%), Postives = 143/206 (69.42%), Query Frame = -3
Query:  246 GKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHITEVAA 863
            GK++ K+EMRSY+EMVV Q++QMSEDNQQL YLKN++VK ++ SKA+E +  +V++KLRET+EEN  V+ + K +H + +EEM  QE++F   I  IH+A ++KE+ FEKL Q+ER K ++   +    +D +LR E + KFI  Q K++ EF   RD LIK H +K   +++ + + E+ELEK FDA LT LMEK+     E ++
Sbjct:  388 GKSRLKYEMRSYNEMVVIQMKQMSEDNQQLNYLKNKMVKTEQRSKAVEESLGVVTQKLRETIEENIFVRSKAKEKHMEYEEEMKSQEEIFHGLIEDIHKATEDKEKQFEKLLQEERSKARRFDVDSGTMKDRQLRKEYVQKFIDCQVKDVAEFEVERDELIKVHEDKKLKLKKEYMDLELELEKEFDAALTGLMEKHKPDTFEASS 593          
The following BLAST results are available for this feature:
BLAST of CX672327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SGS3_SOLLC4.278e-6762.12Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum ... [more]
SGS3_ARATH2.273e-6057.64Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidop... [more]
SGS3_ORYSJ7.084e-5452.74Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=... [more]
SGS3_ORYSI3.516e-5352.24Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=... [more]
SGS3_MAIZE1.294e-4747.09Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_16C09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-16C09-F18-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672327 ID=CX672327; Name=CX672327; organism=Citrus sinensis; type=EST; length=898bp
TTTTTTTAAGATCTTTAAGCCACCAATATAAATTGGCGGTCCATTTTTCA
TATTGCTATATTCAAATGTTTATACCTCTCTTGAGTTTGTAATTCGGAGA
ATATATCAAAAGAAAAGTCTTAACGGAGAATATATCAAAAGAAGTCTTAA
ATATTCTCAGGATTGTATGATCAAATTCTATGCTGCTCATCAAGTTAGTA
TGCTATTTTTCTAACATTCCTTGCATCTCAGCATCAAACACTGTCAGCGG
CAACCTCTGTTATATGAGTAGAGTACTTCTCCATCAATTGAGTCAACTCA
GCATCAAATCCTTTCTCAAGTTCAACCTCTTCCTCCCAATGCCTCCGCCT
CATTGCATCCATCTTCTCACCGTGAAATTTTATCAGCCGGTCCCTTGCTG
CCACAAACTCTTCCATTTCTTTGTCTTGAACCGTTATGAACTTGGCAATT
TCCTCTGCCCTGAGCTTGTAGTCCTCAGTGTTTTTAGGATTAGCAATTGA
TTGCTTCACCTTCTCTCGTTCCTGTTGTTGCAGCTTCTCAAAATTCTCTT
CCTTTTCATCCCTTGCTTCATGAATTATTCTAATCTGGTCCTTGAAGAGT
TGCTCTTGAAAATCCATCTCTTCTTTGTTCTGCTCATGTTGCATTTTGGT
CCTCTGTTTCACAATGCGGTTTTCCTCCATGGTTTCACGCAGCTTCTCAC
TCACAATACTAAAAGTTGCTTCAAGAGCTTTTGAGTGCCTTTGTTCTTTC
ACAACCCTATTCTTCAAATATATGAGCTGTTGATTATCCTCGCTCATTTG
CCTGATCTGATTCACAACCATCTCGTGGTATGATCTCATCTCAAATTTCT
GCTTTGTTTTACCTAATCAGTTATACATCATATCAAACAAAACAAGAT
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