EY664734

Overview
NameEY664734
Unique NameEY664734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7955 contig Csv1_Contig7955:1..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY664734 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.940e-11
Identity = 68/244 (27.87%), Postives = 106/244 (43.44%), Query Frame = 3 
Query:  159 DIFSVKVW---RASMAELLGTAVLVFALDTIVI-----SSIQTDTKTPNLVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTXQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGSSVFCLDNCYCSKRLXPDLG---SPRQMVGPNT-R*RKPSLGSHWVFLAGP 854
            D+  +++W   RA +AE + T + ++     VI     SS         L ++                ISGGHINP V+F   L    S  RA +YI+AQC+GGI G   +K +    + H ++  G        G   +V  G  T  AL  EII +FV ++ +V+ A D ++      V V   +   +G +VF +          P  G   +P + +G      +K +   HW+F AGP
Sbjct:   27 DVGELRLWSFYRALIAEFIATLLFLYITVATVIGYKVQSSADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGI----MKHQYNANG--------GGANMVASGYSTGTALGAEIIGTFVLVY-TVFSATDPKRNARDSHVPVLAPL--PIGFAVFMV-----HLATIPITGTGINPARSIGAAVIYNQKKAWDDHWIFWAGP 250
The following BLAST results are available for this feature:
BLAST of EY664734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PIP26_ORYSJ8.940e-1127.87Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-069-H02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664734 ID=EY664734; Name=EY664734; organism=Citrus sinensis; type=EST; length=856bp
CAAATATGGCCGCAAATTCGGAACTGGCCGGTGATATAGAGGGTGAATAT
GGTGGTAACAGAGTCCAGCCTTTTGCTACACCAAAGCAAGAGCAGAGACT
GATGGATGAAGAGAAGAAACAGAATCCCTCCACATGGAAAAAGATTTTGG
GATTTGAAGACATTTTTTCTGTGAAAGTGTGGAGAGCATCAATGGCTGAG
CTGCTTGGTACAGCAGTGCTGGTTTTTGCACTGGACACAATTGTCATTTC
CTCCATTCAAACAGACACAAAGACCCCAAATCTTGTAATGTCAACTTTGG
TCGCAATCACAATAACAATCCTCCTACTTGCAACTTTTCCAATTTCTGGT
GGCCACATCAACCCATTAGTGTCCTTTGCTGCAGCACTCACTGGCATCGC
GTCCTTCTCAAGGGCAGCCATATACATTTTGGCTCAATGTGTTGGTGGCA
TTTTCGGTGCACTAGCGCTGAAAGCTGTGGTGACCAACAAAATTGCACAT
AATTTTTCACTTGGAGGCTGCACCCTGAATGTTGTGGTACCTGGGCCAGA
TGGGCTTGTTGAGATCGGCTTGGGGACTANGCAGGCCCTTTGGCTTGAGA
TAATTTGCTCGTTTGTGTTCCTTTTTGCTTCTGTGTGGATGGCTTTTGAC
TCCAGACAAGCCAAGGCTCTTGGCAGAGTTACCGTATGCATTGTCATTGG
AACAGTGTTGGGGTCTTCTGTTTTTTGTCTCGACAACTGTTACTGCTCAA
AAAGGCTATGNCCGGATCTGGGCTCACCCCGGCAGATGGTGGGGCCCAAC
ACTCGTTAGAGGAAGCCATCTCTGGGATCGCACTGGGTTTTCTTGGCCGG
CCCNGC
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