CX672286

Overview
NameCX672286
Unique NameCX672286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672286 vs. ExPASy Swiss-Prot
Match: Y3638_RHIEC (UPF0176 protein RHE_CH03638 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=RHE_CH03638 PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.509e-38
Identity = 67/100 (67.00%), Postives = 88/100 (88.00%), Query Frame = -2
Query:  381 RVAMYCTGGIRCEKASSFLLSEGFEEVYHLEGGILKYLEEVPKKESLWEGECFVFDKRVSVEHGLVQGTFKLCYGCKQPVSDADMESPLWEYGVTCPYCY 680
            +VAMYCTGGIRCEKA++F+ +EGF+EVYHL+GGILKYLEEVP++ESLWEG CFVFD+RVSVEHGL +G  +LC+ C+ P++  ++ SPL+E GV+C +CY
Sbjct:  179 KVAMYCTGGIRCEKATAFMKAEGFDEVYHLKGGILKYLEEVPQEESLWEGACFVFDERVSVEHGLKEGEHRLCHACRNPITSEEITSPLYEEGVSCSHCY 278          
BLAST of CX672286 vs. ExPASy Swiss-Prot
Match: Y6152_NOSP7 (UPF0176 protein Npun_F6152 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=Npun_F6152 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.573e-38
Identity = 69/116 (59.48%), Postives = 93/116 (80.17%), Query Frame = -2
Query:  381 EITDKEVGSPEKRMPKRVAMYCTGGIRCEKASSFLLSEGFEEVYHLEGGILKYLEEVPKKESLWEGECFVFDKRVSVEHGLVQGTFKLCYGCKQPVSDADMESPLWEYGVTCPYCY 728
            E  D  V + +    K+VA++CTGGIRCEKASSF+L++GF EVYHL+GGILKYLEEVP +ESLW+GECFVFD+RV+V HGL +G+++LC+ C  P+S+ D  SP +E G++C YC+
Sbjct:  159 EFPDYVVHNLDPTKHKKVALFCTGGIRCEKASSFMLAQGFAEVYHLKGGILKYLEEVPAQESLWQGECFVFDERVAVSHGLEEGSYELCFCCGYPISEEDKISPKYEQGISCAYCF 274          
BLAST of CX672286 vs. ExPASy Swiss-Prot
Match: Y3401_RHILW (UPF0176 protein Rleg2_3401 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=Rleg2_3401 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.488e-38
Identity = 65/100 (65.00%), Postives = 88/100 (88.00%), Query Frame = -2
Query:  381 RVAMYCTGGIRCEKASSFLLSEGFEEVYHLEGGILKYLEEVPKKESLWEGECFVFDKRVSVEHGLVQGTFKLCYGCKQPVSDADMESPLWEYGVTCPYCY 680
            ++AMYCTGGIRCEKA++F+ +EGF+EVYHL+GGILKYLEEVP++ESLW+G CFVFD+RVSVEHGL +G  +LC+ C+ P++  ++ SPL+E GV+C +CY
Sbjct:  179 KIAMYCTGGIRCEKATAFMKAEGFDEVYHLKGGILKYLEEVPQEESLWDGACFVFDERVSVEHGLKEGEHRLCHACRNPITAEEITSPLYEEGVSCSHCY 278          
BLAST of CX672286 vs. ExPASy Swiss-Prot
Match: Y4166_RHIL3 (UPF0176 protein RL4166 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=RL4166 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.779e-38
Identity = 66/100 (66.00%), Postives = 87/100 (87.00%), Query Frame = -2
Query:  381 RVAMYCTGGIRCEKASSFLLSEGFEEVYHLEGGILKYLEEVPKKESLWEGECFVFDKRVSVEHGLVQGTFKLCYGCKQPVSDADMESPLWEYGVTCPYCY 680
            +VAMYCTGGIRCEKA++F+ +EGF+EVYHL+GGILKYLEEVP++ESLW+G CFVFD+RVSVEHGL +G  +LC+ C+ P++  +  SPL+E GV+C +CY
Sbjct:  179 KVAMYCTGGIRCEKATAFMKAEGFDEVYHLKGGILKYLEEVPQEESLWDGACFVFDERVSVEHGLKEGEHRLCHACRNPITAEETTSPLYEEGVSCSHCY 278          
BLAST of CX672286 vs. ExPASy Swiss-Prot
Match: Y2319_METFK (UPF0176 protein Mfla_2319 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=Mfla_2319 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.439e-37
Identity = 65/101 (64.36%), Postives = 85/101 (84.16%), Query Frame = -2
Query:  381 KRVAMYCTGGIRCEKASSFLLSEGFEEVYHLEGGILKYLEEVPKKESLWEGECFVFDKRVSVEHGLVQGTFKLCYGCKQPVSDADMESPLWEYGVTCPYCY 683
            K+VAM+CTGGIRCEKASS++L +GF+EVYHL+GGILKYLE +P++ESLWEGECFVFD+RV+V+HGL  G +  C+ C+ P+S ADM S  +  G++CP CY
Sbjct:  171 KKVAMFCTGGIRCEKASSYMLEQGFKEVYHLQGGILKYLETIPEEESLWEGECFVFDQRVAVKHGLQVGDYDQCFACRHPISAADMASSKYVKGISCPRCY 271          

HSP 2 Score: 22.7126 bits (47), Expect = 2.439e-37
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = -3
Query:  293 RKRGLEHDKDNSRLGALLVVLTK 361
            R+RG EH  DN+R  +L+  L+K
Sbjct:  293 RQRGEEHIGDNARQYSLIHKLSK 315          
BLAST of CX672286 vs. ExPASy Swiss-Prot
Match: Y1496_SYNP2 (UPF0176 protein SYNPCC7002_A1496 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A1496 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.853e-37
Identity = 66/99 (66.67%), Postives = 83/99 (83.84%), Query Frame = -2
Query:  384 RVAMYCTGGIRCEKASSFLLSEGFEEVYHLEGGILKYLEEVPKKESLWEGECFVFDKRVSVEHGLVQGTFKLCYGCKQPVSDADMESPLWEYGVTCPYC 680
            +VAM+CTGGIRCEKA+S+LL++GF+EVYHL+GGILKYLEE+P  ESLWEGECFVFD+RV+V+HGL  G ++LCY C  P+   D  S  +E GV+CPYC
Sbjct:  172 KVAMFCTGGIRCEKATSYLLNQGFQEVYHLKGGILKYLEEIPVAESLWEGECFVFDERVTVKHGLETGHYELCYACGHPIDAEDKTSAAYEIGVSCPYC 270          
BLAST of CX672286 vs. ExPASy Swiss-Prot
Match: Y2887_RHIME (UPF0176 protein R02887 OS=Rhizobium meliloti GN=R02887 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.278e-37
Identity = 65/100 (65.00%), Postives = 85/100 (85.00%), Query Frame = -2
Query:  381 RVAMYCTGGIRCEKASSFLLSEGFEEVYHLEGGILKYLEEVPKKESLWEGECFVFDKRVSVEHGLVQGTFKLCYGCKQPVSDADMESPLWEYGVTCPYCY 680
            ++AMYCTGGIRCEKA++F+  +GFEEVYHL+GGILKYLEE+P +ESLWEG CFVFD+RVSV HGL +G   LC+ C+QP++  D++SPL E GV+C +C+
Sbjct:  185 KIAMYCTGGIRCEKATAFMKEQGFEEVYHLKGGILKYLEEIPPEESLWEGACFVFDERVSVTHGLQEGEHTLCHACRQPLTPEDLQSPLHEEGVSCIHCH 284          
BLAST of CX672286 vs. ExPASy Swiss-Prot
Match: Y2825_ANAVT (UPF0176 protein Ava_2825 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_2825 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.412e-36
Identity = 64/101 (63.37%), Postives = 86/101 (85.15%), Query Frame = -2
Query:  381 KRVAMYCTGGIRCEKASSFLLSEGFEEVYHLEGGILKYLEEVPKKESLWEGECFVFDKRVSVEHGLVQGTFKLCYGCKQPVSDADMESPLWEYGVTCPYCY 683
            K+VAM+CTGGIRCEKASSF+LS+GF EVYHL+GGILKYLE++P +ESLW+GECFVFD+R++V HGL  GT +LC+ C  P+++ D  SP +E G++C +C+
Sbjct:  174 KKVAMFCTGGIRCEKASSFMLSQGFAEVYHLKGGILKYLEQIPPEESLWQGECFVFDERIAVVHGLEPGTHELCFCCGHPLAEEDKASPQYEEGISCSHCF 274          
BLAST of CX672286 vs. ExPASy Swiss-Prot
Match: Y411_PSYCK (UPF0176 protein Pcryo_0411 OS=Psychrobacter cryohalolentis (strain K5) GN=Pcryo_0411 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.844e-36
Identity = 70/132 (53.03%), Postives = 98/132 (74.24%), Query Frame = -2
Query:  384 FQNDKTTHKESKVEITDEITDKEVGSPEKRMPKRVAMYCTGGIRCEKASSFLLSEGFEEVYHLEGGILKYLEEVPKKESLWEGECFVFDKRVSVEHGLVQGTFKLCYGCKQPVSDADMESPLWEYGVTCPYC 779
            FQN    + E+  E  + +  KE+  P K   K+VAM+CTGGIRCEK+++F+  +GFEEVYHLEGGILKYLEEVP  +S+WEG+CFVFD RVSV H L +G+++ C+ C+ P++ A+M+SP +  G +CP+C
Sbjct:  164 FQNAVNPNTETFREFPEYVA-KEL-DPSKH--KKVAMFCTGGIRCEKSTAFMREQGFEEVYHLEGGILKYLEEVPASDSMWEGDCFVFDNRVSVNHNLEKGSYEQCFACRMPITQAEMQSPAYIKGESCPHC 291          
BLAST of CX672286 vs. ExPASy Swiss-Prot
Match: Y895_GLUOX (UPF0176 protein GOX0895 OS=Gluconobacter oxydans GN=GOX0895 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.409e-36
Identity = 66/105 (62.86%), Postives = 90/105 (85.71%), Query Frame = -2
Query:  378 RMPKRVAMYCTGGIRCEKASSFLLSEGFEEVYHLEGGILKYLEEVPKKESLWEGECFVFDKRVSVEHGLVQGTFKLCYGCKQPVSDADMESPLWEYGVTCPYCYS 692
            R+PK +AM+CTGGIRCEK++SF  +EG +EVYHL+GGILKYLE VP++ESLWEGECFVFD+RVSV+HGL  GT  +C+ C++P+++ D  SPL+  GV+CP+C++
Sbjct:  177 RLPK-IAMFCTGGIRCEKSTSFARAEGVDEVYHLKGGILKYLETVPEEESLWEGECFVFDQRVSVKHGLEIGTHDVCHACRRPLNEKDKASPLFVQGVSCPHCHN 280          
The following BLAST results are available for this feature:
BLAST of CX672286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
Y3638_RHIEC1.509e-3867.00UPF0176 protein RHE_CH03638 OS=Rhizobium etli (str... [more]
Y6152_NOSP72.573e-3859.48UPF0176 protein Npun_F6152 OS=Nostoc punctiforme (... [more]
Y3401_RHILW7.488e-3865.00UPF0176 protein Rleg2_3401 OS=Rhizobium leguminosa... [more]
Y4166_RHIL39.779e-3866.00UPF0176 protein RL4166 OS=Rhizobium leguminosarum ... [more]
Y2319_METFK2.439e-3764.36UPF0176 protein Mfla_2319 OS=Methylobacillus flage... [more]
Y1496_SYNP24.853e-3766.67UPF0176 protein SYNPCC7002_A1496 OS=Synechococcus ... [more]
Y2887_RHIME8.278e-3765.00UPF0176 protein R02887 OS=Rhizobium meliloti GN=R0... [more]
Y2825_ANAVT1.412e-3663.37UPF0176 protein Ava_2825 OS=Anabaena variabilis (s... [more]
Y411_PSYCK1.844e-3653.03UPF0176 protein Pcryo_0411 OS=Psychrobacter cryoha... [more]
Y895_GLUOX2.409e-3662.86UPF0176 protein GOX0895 OS=Gluconobacter oxydans G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_16A11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-16A11-B22-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672286 ID=CX672286; Name=CX672286; organism=Citrus sinensis; type=EST; length=786bp
TTTTTTTTTTTTTTTTTGCTGCTAATTTCTCTCTTGCATCCATACATCAA
AATTTCTCTGTAGAAGTGTAATGCAACAAAGATGCACATTAACTTACTAA
AACGCAAAAGTTAAGCAAATTCCTAGTAAGGGTAAACATATCAAATGAAC
ATTTGAAATATAGAGATTGTCGAAACTCAATGATCCATCAAAATTGATTT
TCTTATATCTCAACCATTTGATGAGCATTATGAATTCGAAAGCTTAGTAA
AGCTTTCATTTATACCATCAGGCTTTGATCTTGGTCGACGACCTTTGTCA
GGACCACCAATAATGCCCCAAGTCTTGAATTGTCTTTGTCGTGCTCTAGC
CCTCTCTTTCTCTTCTTCAGATTTCGATGAGTAACAGTATGGACAAGTAA
CTCCATACTCCCACAGTGGGGATTCCATGTCGGCATCACTCACTGGTTGC
TTGCATCCATAGCAAAGCTTGAAAGTTCCCTGCACCAAACCATGCTCAAC
AGATACTCGTTTGTCAAACACAAAGCACTCACCCTCCCAGAGGCTCTCTT
TCTTTGGAACTTCCTCCAGGTATTTCAGAATCCCACCTTCCAAATGATAA
ACCTCTTCGAAACCCTCGCTGAGGAGGAAACTTGAAGCTTTCTCACATCG
AATTCCTCCTGTGCAGTACATTGCAACCCGCTTGGGCATCCTCTTTTCTG
GAGAGCCAACTTCTTTATCAGTGATTTCATCTGTTATCTCCACCTTTGAC
TCCTTATGAGTAGTTTTATCATTCTGGAACTGATCC
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