CX672278

Overview
NameCX672278
Unique NameCX672278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX672278_ssr11 microsatellite CX672278_ssr11:11..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX672278 vs. ExPASy Swiss-Prot
Match: RAGP2_ARATH (RAN GTPase-activating protein 2 OS=Arabidopsis thaliana GN=RANGAP2 PE=1 SV=2)

HSP 1 Score: 276.174 bits (705), Expect = 1.543e-73
Identity = 143/228 (62.72%), Postives = 171/228 (75.00%), Query Frame = 1
Query:  130 NSERRPFSIKLWPPSQNTRQMLVERMRNNLTTKSIFTQRYGVLTQEEAEENAKKIEDVAFSSANEHYEKEPDGDGSSAVQLYARECSKLLLEALKRGPRTKEFGEVPSFEKTEDVTEELTSEKVSTADVTLFDISKGQRAFXXXXXXXXXLRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNL 813
            +S    FSIKLWPPS  TR+ L+ER+ NN ++K+IFT++YG LT+++A ENAK+IED+AFS+AN+ +E+EPDGDG SAVQLYA+ECSKL+LE LK+GP  K                EL SE   +   T FDISKG+RAF         L+PLKEPGN+YTKICFSNRSFGL AARVAEPIL S+  QLKEVDLSDFVAGRPE EALEVM IFS AL+GS+L SLNL
Sbjct:    6 DSRPHAFSIKLWPPSLPTRKALIERITNNFSSKTIFTEKYGSLTKDQATENAKRIEDIAFSTANQQFEREPDGDGGSAVQLYAKECSKLILEVLKKGPVAKV------------AARELISEDSVSPRETFFDISKGKRAFIEAEEAEELLKPLKEPGNAYTKICFSNRSFGLGAARVAEPILASLKDQLKEVDLSDFVAGRPELEALEVMNIFSDALQGSILSSLNL 221          
BLAST of CX672278 vs. ExPASy Swiss-Prot
Match: RAGP1_ARATH (RAN GTPase-activating protein 1 OS=Arabidopsis thaliana GN=RANGAP1 PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.810e-64
Identity = 129/234 (55.13%), Postives = 167/234 (71.37%), Query Frame = 1
Query:  112 MDATSPNSERRPFSIKLWPPSQNTRQMLVERMRNNLTTKSIFTQRYGVLTQEEAEENAKKIEDVAFSSANEHYEKEPDGDGSSAVQLYARECSKLLLEALKRGPRTKEFGEVPSFEKTEDVTEELTSEKVSTADVTLFDISKGQRAFXXXXXXXXXLRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNL 813
            MD ++  ++ R  S+K+WPPS++TR MLVERM  N+TT SIF+++YG+L+ EEAE++AK+IED+AF++AN+H++ EPDGDG+SAV +YA+E SKL+L+ +KRGP                  +E +  +VS      FDIS G RAF         LRPL +P NSYTKI FSNRSFG EAA+ A  +L SI  QL EVDLSDFVAGRPEAEALEVM +FS+ALEGS L+ LNL
Sbjct:    1 MDHSAKTTQNRVLSVKMWPPSKSTRLMLVERMTKNITTPSIFSRKYGLLSVEEAEQDAKRIEDLAFATANKHFQNEPDGDGTSAVHVYAKESSKLMLDVIKRGP------------------QEESEVEVSKDGDVFFDISGGSRAFIEEEEARDLLRPLADPRNSYTKIRFSNRSFGSEAAKFAASVLSSIKDQLTEVDLSDFVAGRPEAEALEVMNMFSSALEGSKLRYLNL 216          
BLAST of CX672278 vs. ExPASy Swiss-Prot
Match: MAF1_SOLLC (MFP1 attachment factor 1 OS=Solanum lycopersicum GN=MAF1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.820e-13
Identity = 41/126 (32.54%), Postives = 69/126 (54.76%), Query Frame = 1
Query:  115 DATSPNSERRPF--SIKLWPPSQNTRQMLVERMRNNLTTKSIFTQRYGVLTQEEAEENAKKIEDVAFSSANEHYEKEPDGDGSSAVQLYARECSKLLLEALK--RGPRTKEFGEVPSFEKTEDVTE 480
            +  +  ++ +P   S  +WPP+Q TR  ++ R+  +L+T SI ++RYG L Q+EA E A+ IE+ AF++A          DG   +Q+Y++E SK +++ +K    P     GE    E   D +E
Sbjct:   11 ETVTQETQNKPMTTSFSIWPPTQRTRDAVINRLIESLSTPSILSKRYGTLPQDEASETARLIEEEAFAAAGS--TASDADDGIEILQVYSKEISKRMIDTVKSRSAPAAASEGESKPSELPADASE 134          
BLAST of CX672278 vs. ExPASy Swiss-Prot
Match: WPP2_ARATH (WPP domain-containing protein 2 OS=Arabidopsis thaliana GN=WPP2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.984e-12
Identity = 37/96 (38.54%), Postives = 62/96 (64.58%), Query Frame = 1
Query:  133 SERRP--FSIKLWPPSQNTRQMLVERMRNNLTTKSIFTQRYGVLTQEEAEENAKKIEDVAFSSANEHYEKEPDGDGSSAVQLYARECSKLLLEALK 414
            SE++P   S+++WPP+Q TR  ++ R+   L+T+SI ++RYG L  ++A   AK IE+ A+  A+       D DG   ++LY++E SK +LE++K
Sbjct:   49 SEKKPGGISLRIWPPTQKTRDAVLNRLIETLSTESILSKRYGTLKSDDATTVAKLIEEEAYGVASNAVSS--DDDGIKILELYSKEISKRMLESVK 142          
BLAST of CX672278 vs. ExPASy Swiss-Prot
Match: WPP1_ARATH (WPP domain-containing protein 1 OS=Arabidopsis thaliana GN=WPP1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.540e-12
Identity = 37/98 (37.76%), Postives = 59/98 (60.20%), Query Frame = 1
Query:  121 TSPNSERRPFSIKLWPPSQNTRQMLVERMRNNLTTKSIFTQRYGVLTQEEAEENAKKIEDVAFSSANEHYEKEPDGDGSSAVQLYARECSKLLLEALK 414
            T  N      S+++WPP+Q TR  ++ R+   L+T+SI ++R+G L  EEA   AK IED A++ A+       D DG   ++ Y++E SK +LE++K
Sbjct:   31 TEKNPNPVTISLRIWPPTQKTRDAVINRLIETLSTESILSKRFGSLESEEASSVAKSIEDEAYAIASA--TVFGDDDGIEILKAYSKEISKRMLESVK 126          
The following BLAST results are available for this feature:
BLAST of CX672278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RAGP2_ARATH1.543e-7362.72RAN GTPase-activating protein 2 OS=Arabidopsis tha... [more]
RAGP1_ARATH3.810e-6455.13RAN GTPase-activating protein 1 OS=Arabidopsis tha... [more]
MAF1_SOLLC6.820e-1332.54MFP1 attachment factor 1 OS=Solanum lycopersicum G... [more]
WPP2_ARATH1.984e-1238.54WPP domain-containing protein 2 OS=Arabidopsis tha... [more]
WPP1_ARATH7.540e-1237.76WPP domain-containing protein 1 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_16A07_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-16A07-B14-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672278 ID=CX672278; Name=CX672278; organism=Citrus sinensis; type=EST; length=814bp
CTTTTTCCCTCCACCCACCCACTTTCTGTCTCTCTTTATTCTTTGAACCG
CTTAGGTTTCCGTTAATCGCAGCTGAAGGCTTCATATTTAGAGAGAGTAA
GCTTCTTTGGAATGGATGCCACATCGCCTAATTCAGAACGCCGTCCGTTT
TCAATTAAACTGTGGCCTCCAAGCCAAAACACTAGACAGATGCTTGTTGA
ACGTATGAGGAACAATCTCACAACTAAATCCATTTTCACCCAGAGGTACG
GCGTTTTGACCCAAGAAGAGGCTGAAGAGAATGCAAAGAAAATTGAAGAT
GTGGCTTTCTCCTCTGCGAATGAGCACTATGAAAAGGAACCTGATGGCGA
TGGAAGTTCTGCTGTGCAGCTTTATGCCAGAGAATGCAGTAAGCTTTTGC
TGGAGGCTCTTAAGAGAGGCCCTAGAACAAAGGAATTTGGGGAGGTGCCA
TCATTTGAGAAAACTGAGGATGTCACAGAGGAGTTGACATCTGAGAAAGT
CTCTACTGCTGATGTTACCCTTTTTGATATATCCAAAGGACAGCGTGCGT
TTATTGAGGCAGAAGAGGCTGAAGAGATTCTAAGACCACTAAAGGAGCCT
GGAAACTCCTATACTAAGATTTGCTTTAGCAATAGAAGCTTTGGTTTAGA
GGCAGCCCGAGTAGCTGAGCCCATTTTGGTTTCCATCAATAGTCAACTGA
AGGAAGTTGATCTCTCAGATTTTGTTGCAGGAAGACCGGAGGCAGAAGCT
CTTGAAGTTATGGCAATATTCTCTGCAGCCCTGGAAGGTAGTGTTTTAAA
ATCTCTGAACCTAT
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