CX672275

Overview
NameCX672275
Unique NameCX672275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672275 vs. ExPASy Swiss-Prot
Match: YKB4_SCHPO (UPF0399 protein C823.04 OS=Schizosaccharomyces pombe GN=SPAC823.04 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.682e-24
Identity = 56/181 (30.94%), Postives = 103/181 (56.91%), Query Frame = -1
Query:  244 NSQEKKAGRANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEREELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILSEXXXXXXXXXXXXXRPFYLKKSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMPYRRP 786
            +  ++ +   +K    ++S+KKPVSRFREV+  PK+  RDPRF+SL GNL  +  +K Y FL E  + +E ++L+ +LK   D    + +++ +  +  ++     +     ++ E             +PFYLK++E +K   ++KY  ++G+  ++ +IEK+RR+ A K+ K++P  RP
Sbjct:   41 SEDDEDSNNESKTAKSQLSSKKPVSRFREVISEPKKFTRDPRFDSLSGNLSKDKVKKNYGFLNEYRV-SEIQQLRDELKICKDQERAESIRQTLKSLLSKMERHLEEERAERVMHEFRAQEKERVKEGKKPFYLKRNEQKKLIQMDKYKSMEGTKALDKYIEKKRRRRAQKEKKHLPRARP 220          
BLAST of CX672275 vs. ExPASy Swiss-Prot
Match: CF153_MOUSE (UPF0399 protein C6orf153 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.399e-23
Identity = 65/180 (36.11%), Postives = 104/180 (57.78%), Query Frame = -1
Query:  256 RKNSQEKKAGRANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEREEL-KKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILSEXXXXXXXXXXXXXRPFYLKKSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMP 792
            R  S ++    A+K+RP+E+SAK  V   R+VV   K+V RDPRF+ L G+ + E F K Y FL  N + A+ ++L KKQLK+       DKL++ +  +++Q   +  +     +                RP++LKKSE R+  L EK+ +L+ S K+ESF+ ++RR+NA KD +++P
Sbjct:   63 RTRSPQQPVCVADKHRPLEMSAKVRVPFLRQVVPISKKVARDPRFDDLSGDYNPEVFDKTYQFL--NDIRAKEKQLVKKQLKRHRSGEERDKLQQLLQRMEQQEMAQQERKQQQELRLALKQERRAQAQQGHRPYFLKKSEQRQLALAEKFKELRRSKKLESFLSRKRRRNAGKDRRHLP 240          
BLAST of CX672275 vs. ExPASy Swiss-Prot
Match: U399_NEMVE (UPF0399 protein v1g245966 OS=Nematostella vectensis GN=v1g245966 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.827e-23
Identity = 59/173 (34.10%), Postives = 100/173 (57.80%), Query Frame = -1
Query:  247 RANKNR-PMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEREELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILSEXXXXXXXXXXXXXRPFYLKKSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMPYRR 762
            +  KN+ P E+S+K+ V + R+VVQ  K++ RDPRF+ L G  + + FRK Y F+ +  +  E++ ++K+LKKT +      L   +  +++Q R   +         +             +PFYL+KSE++K  L EKY +LK  GK++ ++ KRR+K A+KD +++P RR
Sbjct:   72 KKKKNKGPQELSSKQRVPKLRKVVQVKKKMGRDPRFDDLSGKFNEDLFRKSYSFVNDIRVE-EKKSVEKELKKTKNAEKRKNLNDLLKVMNQQERSRKSAEAKRESKKKIKETERELVQKGKKPFYLRKSELKKLELAEKYKELKSKGKLQKYLTKRRKKTASKDRRHVPERR 243          
BLAST of CX672275 vs. ExPASy Swiss-Prot
Match: CF153_HUMAN (UPF0399 protein C6orf153 OS=Homo sapiens GN=C6orf153 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.827e-23
Identity = 69/186 (37.10%), Postives = 106/186 (56.99%), Query Frame = -1
Query:  256 NSQEKKAGR--------ANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEREEL-KKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILSEXXXXXXXXXXXXXRPFYLKKSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMP 786
            NS +K+A R        A+K+RP+E+SAK  V   R+VV   K+V RDPRF+ L G  + E F K Y FL  N + A+ +EL KKQLKK       +KL++ +  +++Q   +  +     +                RP++LKKSE R+  L EK+ +LK S K+E+F+ ++RR+NA KD +++P
Sbjct:   72 NSPKKQASRPPIQNACVADKHRPLEMSAKIRVPFLRQVVPISKKVARDPRFDDLSGEYNPEVFDKTYQFL--NDIRAKEKELVKKQLKKHLSGEEHEKLQQLLQRMEQQEMAQQERKQQQELHLALKQERRAQAQQGHRPYFLKKSEQRQLALAEKFKELKRSKKLENFLSRKRRRNAGKDRRHLP 255          
BLAST of CX672275 vs. ExPASy Swiss-Prot
Match: CF153_BOVIN (UPF0399 protein C6orf153 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.386e-23
Identity = 63/168 (37.50%), Postives = 97/168 (57.74%), Query Frame = -1
Query:  256 ANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEREELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILSEXXXXXXXXXXXXXRPFYLKKSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMP 759
            A+K+RP+E+SAK  V   R+VV   K+V RDPRF+ L G  + E F K Y FL ++    E+E +KKQLKK       +KL+  +  +++Q   +  +     +                RP++LKKSE R+  L EK+ +LK S K+ESF+ ++RR+NA KD +++P
Sbjct:   76 ADKHRPLEMSAKVRVPFLRQVVPISKKVARDPRFDDLSGEYNPEVFDKTYQFL-DDIRAREKELVKKQLKKHRSGEEHEKLQHLLQRMEQQEMAQKERKRQQELRLALKQERRAQAQQGHRPYFLKKSEQRQLVLAEKFKELKRSKKLESFLSRKRRRNAGKDRRHLP 242          
BLAST of CX672275 vs. ExPASy Swiss-Prot
Match: U399_DICDI (UPF0399 protein OS=Dictyostelium discoideum GN=DDB_G0278751 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.566e-19
Identity = 59/183 (32.24%), Postives = 101/183 (55.19%), Query Frame = -1
Query:  247 NSQEK-KAGRANKNRPMEVSAKKPVSRFREVV-QAPKRVVRDPRFESLCGNLDVEG-FRKRYDFLFENTLPAEREELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILSEXXXXXXXXXXXXXRPFYLKKSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKYMPYRR 786
            NS+ K K  R + + P+E++A KPVSRFR+VV    K  VRDPRF+SL G    E  +RKRY FL ++ +  + E ++   K+ +D    D+L K+I     QL+ +  K       ++              P+++    +++  L EK+ +LK S K++ F+E +R++ ++K+  ++P RR
Sbjct:  110 NSKNKYKIKRESSDAPVEMTAMKPVSRFRQVVVNKTKMNVRDPRFDSLSGGKYNEDLYRKRYGFL-DDVIKRDVERMESTWKQMDDCRERDQLYKKIQSKKSQLKTQQLKDQKRETKNKLWSNEIESVKKGKTPYHISNKTVKQFELQEKFKQLKASNKLDKFMETKRKRISSKEKTFLPQRR 291          
The following BLAST results are available for this feature:
BLAST of CX672275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
YKB4_SCHPO3.682e-2430.94UPF0399 protein C823.04 OS=Schizosaccharomyces pom... [more]
CF153_MOUSE1.399e-2336.11UPF0399 protein C6orf153 homolog OS=Mus musculus P... [more]
U399_NEMVE1.827e-2334.10UPF0399 protein v1g245966 OS=Nematostella vectensi... [more]
CF153_HUMAN1.827e-2337.10UPF0399 protein C6orf153 OS=Homo sapiens GN=C6orf1... [more]
CF153_BOVIN2.386e-2337.50UPF0399 protein C6orf153 homolog OS=Bos taurus PE=... [more]
U399_DICDI3.566e-1932.24UPF0399 protein OS=Dictyostelium discoideum GN=DDB... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_16A06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-16A06-B12-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672275 ID=CX672275; Name=CX672275; organism=Citrus sinensis; type=EST; length=792bp
GTTTCAATAACAGAGTCCAAAAAACGTGCTCCAAAATTACAACTACAAAA
CTGTTAACTGTTAACTGTTCACCTCGCTGTCTACTGATCAGTAAAAATAA
AATCTCGAGAGCACTACAGAATGTTTGGAACTAAACAGGGAGATGTTCTT
ACTACCATGTGTACTATGGGACGATGGGGCATATATAACTCATTGCGCAA
CCAAAAACATGTAAAATCATTGGTTCTATTGGTCATTATTATTGGGCCGA
CGATATGGCATGTATTTGTGATCCTTTGCAGCATTCTTCCTTCGTCTTTT
CTCAATGAATGATTCAACTTTGCCAGACCCCTTGAGCTTGTTATATTTCT
CAATGAGTCTTTGCTTCCGGATTTCCGATTTTTTAAGATAAAAGGGCCGT
TTCCCGTGCTTCGCTGCTTCTCTCTCTTTCTTCTTGTGCTCAGACAGTAT
AGCAGCATCAGTGCTCTTTGTTGACTCAAACCTTAATTGCTTGTCAATCC
AAGATATACGTTTCTTCAATTTGTCAACAGCATTCGGATCATTGGTTTTC
TTCAATTGCTTCTTCAGCTCCTCTCTTTCCGCAGGAAGGGTATTTTCAAA
AAGAAAATCATATCTTTTCCTAAACCCCTCAACGTCAAGATTACCACACA
ATGACTCGAAACGTGGATCACGTACCACCCTTTTAGGTGCTTGAACAACC
TCTCTAAACCGACTCACCGGCTTCTTTGCACTAACCTCCATCGGCCTGTT
TTTGTTAGCTCTGCCAGCTTTCTTTTCCTGACTGTTCTTTCT
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