CX672226

Overview
NameCX672226
Unique NameCX672226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9981 contig Csv1_Contig9981:172..1020. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672226 vs. ExPASy Swiss-Prot
Match: IF6_MOUSE (Eukaryotic translation initiation factor 6 OS=Mus musculus GN=Eif6 PE=1 SV=2)

HSP 1 Score: 373.244 bits (957), Expect = 9.830e-103
Identity = 182/243 (74.90%), Postives = 207/243 (85.19%), Query Frame = -2
Query:  108 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDS 836
            MA R  FEN+CEVG F+KLTNAYCLVAIGGSE+FYS FE EL+D  PVV  SI G RIIGR+C GN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEE++ADVL VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSV+ESVFKL EA+PS +   MR SLIDS
Sbjct:    1 MAVRASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDS 243          
BLAST of CX672226 vs. ExPASy Swiss-Prot
Match: IF6_HUMAN (Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 1.677e-102
Identity = 181/243 (74.49%), Postives = 206/243 (84.77%), Query Frame = -2
Query:  108 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDS 836
            MA R  FEN+CE+G F+KLTN YCLVAIGGSE+FYS FE EL+D  PVV  SI G RIIGR+C GN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEE++ADVL VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSV+ESVFKL EAQPS +   MR SLIDS
Sbjct:    1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLIDS 243          
BLAST of CX672226 vs. ExPASy Swiss-Prot
Match: IF6_BOVIN (Eukaryotic translation initiation factor 6 OS=Bos taurus GN=EIF6 PE=2 SV=2)

HSP 1 Score: 369.777 bits (948), Expect = 1.087e-101
Identity = 180/243 (74.07%), Postives = 205/243 (84.36%), Query Frame = -2
Query:  108 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDS 836
            MA R  FEN+CE+G F+KLTN+YCLVAIGGSE+FYS FE ELA   PVV  SI G RIIGR+C GN++GLL+P+ TTDQELQH+RN LPD V ++R+EERLSALGN   CND+VAL H DLDRETEE++ADVL VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSV+ESVFKL EAQPS +   MR SLIDS
Sbjct:    1 MAVRASFENNCEIGCFAKLTNSYCLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLIDS 243          
BLAST of CX672226 vs. ExPASy Swiss-Prot
Match: IF6_YEAST (Eukaryotic translation initiation factor 6 OS=Saccharomyces cerevisiae GN=TIF6 PE=1 SV=1)

HSP 1 Score: 361.303 bits (926), Expect = 3.865e-99
Identity = 175/244 (71.72%), Postives = 208/244 (85.25%), Query Frame = -2
Query:  105 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDSY 836
            MATR  FENS E+GVFSKLTN YCLVA+GGSE+FYS FEAEL D  P+V T+I GTRIIGR+ AGN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D+DRETEE+I+DVLGVEVFRQTI+GNILVGSYCS SN+GGLVHP TS++D +ELS+LLQVPLVAGTVNRGS V+ AG+ VND+ A  G DTTA ELSVIES+F+L++AQP ++   +R +LI++Y
Sbjct:    1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPESISGNLRDTLIETY 244          
BLAST of CX672226 vs. ExPASy Swiss-Prot
Match: IF6_SCHPO (Eukaryotic translation initiation factor 6 OS=Schizosaccharomyces pombe GN=tif6 PE=2 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 9.521e-98
Identity = 174/244 (71.31%), Postives = 208/244 (85.25%), Query Frame = -2
Query:  105 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDSY 836
            MA R  FENS E+GVFS LTN+Y LVA+GGSE+FYS FEAEL DV PVV T+IGGTRIIGRL  GN+ GLL+P +TTD ELQHLRNSLPD V +QR++ERLSALGN +ACND+VAL H D++RETEE+IADVL VEVFRQT+AGN+L GSYC+ SN+G LVHP TSI++ DELS+LLQVPLVAGT+NRGS+VI AGL VNDW AF G DTTATEL+V ES+FKL++AQPSA++   R +L++SY
Sbjct:    1 MALRAQFENSNEIGVFSNLTNSYALVALGGSENFYSVFEAELGDVVPVVHTTIGGTRIIGRLTCGNRKGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPDIERETEEIIADVLDVEVFRQTVAGNVLTGSYCALSNQGALVHPRTSIQEQDELSSLLQVPLVAGTINRGSDVIGAGLVVNDWCAFAGLDTTATELAVCESIFKLQDAQPSAIISN-RDTLVESY 243          
BLAST of CX672226 vs. ExPASy Swiss-Prot
Match: IF6_DROME (Probable eukaryotic translation initiation factor 6 OS=Drosophila melanogaster GN=eIF6 PE=2 SV=3)

HSP 1 Score: 351.288 bits (900), Expect = 4.000e-96
Identity = 172/242 (71.07%), Postives = 206/242 (85.12%), Query Frame = -2
Query:  111 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLID 836
            MA R+ FEN+ ++GVF+KLTN YCLVAIGGSE+FYS FEAEL D  PVV  ++GG RIIGRL  GN+NGLL+P++TTD+ELQHLRNSLPD V + R+EERLSALGN IACND+VAL H DLD+ETEE+IADVL VEVFRQTIA N LVGSY   SN+GG+VHP TSI+D DELS+LLQVPLVAGTVNRGSEV+AAG+ VNDW +F G +TTATE+SVIESVFKL +AQP+ +  ++R +LI+
Sbjct:    1 MALRVQFENNDDIGVFTKLTNTYCLVAIGGSETFYSAFEAELGDTIPVVHANVGGCRIIGRLTVGNRNGLLVPNSTTDEELQHLRNSLPDAVKIYRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTIADNSLVGSYAVLSNQGGMVHPKTSIQDQDELSSLLQVPLVAGTVNRGSEVLAAGMVVNDWLSFVGMNTTATEISVIESVFKLNQAQPATVTTKLRAALIE 242          
BLAST of CX672226 vs. ExPASy Swiss-Prot
Match: IF6_DICDI (Probable eukaryotic translation initiation factor 6 OS=Dictyostelium discoideum GN=eif6 PE=3 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 1.164e-95
Identity = 171/243 (70.37%), Postives = 205/243 (84.36%), Query Frame = -2
Query:  108 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDS 836
            MATRL +ENSC+VGVF KLTN YCLV   GS+ F  T E  LAD  PVV+TSI GTRI+GRL AGNKNGLLLP+T TDQELQ +RNSLPD VVVQRIEE+ SALGNCIA ND+VAL H D+DRETEE+IADVLGVEVFRQT++GN+LVG+YC+ +N+G LVHP TSI D DELS+LLQVPLVAGTVNRG+E +AAG  VNDWTA  G+DTTATE+SVIES+F L+ ++PS +++ +R S++D+
Sbjct:    1 MATRLQYENSCDVGVFLKLTNKYCLVGQCGSKQFLHTVENRLADHIPVVETSIAGTRIVGRLSAGNKNGLLLPNTCTDQELQQIRNSLPDDVVVQRIEEKFSALGNCIATNDYVALVHPDIDRETEEIIADVLGVEVFRQTVSGNVLVGTYCALTNQGALVHPMTSIADQDELSSLLQVPLVAGTVNRGNECVAAGCVVNDWTAIVGADTTATEISVIESIFALQGSKPSNIINNIRNSIVDN 243          
BLAST of CX672226 vs. ExPASy Swiss-Prot
Match: IF6_ARATH (Eukaryotic translation initiation factor 6 OS=Arabidopsis thaliana GN=At2g39820 PE=2 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 6.386e-94
Identity = 170/247 (68.83%), Postives = 209/247 (84.62%), Query Frame = -2
Query:  102 MATRLMFENS-CEVGVFSKLTNAYCLV-AIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDSYV 836
            MATRL ++N+ CE+GVFSKLTNAYCLV A   S +F++ +E++L  V P+V TSIGG+  IG LC GNKNGLLL HT TDQELQHLR+SLPD+VVVQRIEE + ALGN IACND+VAL H  L+++TEE+I+DVLGVEV+RQTIA N LVGSYCS SN GG+VH +T++E++ EL+ L+QVPLVAGTVNRGS+VI+AGLTVNDWTAFCGSDTTA ELSV+ ++FKL ++QP  +  EMRKSLID+YV
Sbjct:    1 MATRLQYDNNNCEIGVFSKLTNAYCLVSATSASANFFTGYESKLKGVIPIVTTSIGGSGTIGSLCVGNKNGLLLSHTITDQELQHLRDSLPDEVVVQRIEEPICALGNAIACNDYVALVHPKLEKDTEEIISDVLGVEVYRQTIANNELVGSYCSLSNNGGMVHSNTNVEEMVELANLVQVPLVAGTVNRGSQVISAGLTVNDWTAFCGSDTTAVELSVVNNIFKLVQSQPDFVGSEMRKSLIDTYV 247          
BLAST of CX672226 vs. ExPASy Swiss-Prot
Match: IF6_BETVU (Eukaryotic translation initiation factor 6 (Fragment) OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 2.054e-92
Identity = 169/193 (87.56%), Postives = 179/193 (92.75%), Query Frame = -2
Query:  258 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 836
            MATRL FEN+CEVGVFSKLTNAYCLVAIGGSE+FYSTFE ELAD  PVVKTSI GTRIIG     NKNGLL+PHTTTDQELQHLRN LPD VVVQRIEE+LSALGNCIACND+VALTHTDLD+ETEE+IADVLGVEVF QTIAGNILVGSYC+ +N+GGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI
Sbjct:    1 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSTFETELADYIPVVKTSIAGTRIIGPNVCRNKNGLLVPHTTTDQELQHLRNCLPDSVVVQRIEEKLSALGNCIACNDYVALTHTDLDKETEELIADVLGVEVFGQTIAGNILVGSYCAITNKGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 193          
BLAST of CX672226 vs. ExPASy Swiss-Prot
Match: IF6_CAEEL (Eukaryotic translation initiation factor 6 OS=Caenorhabditis elegans GN=eif-6 PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.804e-80
Identity = 145/244 (59.43%), Postives = 192/244 (78.69%), Query Frame = -2
Query:  108 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE-AQPSALVDEMRKSLIDS 836
            MA R+ +E S +VGVF  LTN+YCLV +GG+++FYS  EAEL+D+ PVV TSI  TRI+GRL  GN++GLL+P+ TTDQELQHLRNSLPD+V ++R++ERLSALGN IACNDHVA+ H ++  ETE+ + +VL VEVFR ++A N LVGSYC  S+ G LV   T  E   E++ LLQ+P+VAGT NRGSE+I AG+ VNDW AFCG D+T+TELSV+ES+FKL E   P+++ +++R +LI+S
Sbjct:    1 MALRVDYEGSNDVGVFCTLTNSYCLVGVGGTQNFYSILEAELSDLIPVVHTSIASTRIVGRLTVGNRHGLLVPNATTDQELQHLRNSLPDEVAIRRVDERLSALGNVIACNDHVAIVHAEISAETEQALVEVLKVEVFRVSLAQNSLVGSYCILSSNGCLVAARTPPETQREIAALLQIPVVAGTCNRGSELIGAGMVVNDWVAFCGLDSTSTELSVVESIFKLGEQGAPTSISNQLRDTLIES 244          
The following BLAST results are available for this feature:
BLAST of CX672226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_MOUSE9.830e-10374.90Eukaryotic translation initiation factor 6 OS=Mus ... [more]
IF6_HUMAN1.677e-10274.49Eukaryotic translation initiation factor 6 OS=Homo... [more]
IF6_BOVIN1.087e-10174.07Eukaryotic translation initiation factor 6 OS=Bos ... [more]
IF6_YEAST3.865e-9971.72Eukaryotic translation initiation factor 6 OS=Sacc... [more]
IF6_SCHPO9.521e-9871.31Eukaryotic translation initiation factor 6 OS=Schi... [more]
IF6_DROME4.000e-9671.07Probable eukaryotic translation initiation factor ... [more]
IF6_DICDI1.164e-9570.37Probable eukaryotic translation initiation factor ... [more]
IF6_ARATH6.386e-9468.83Eukaryotic translation initiation factor 6 OS=Arab... [more]
IF6_BETVU2.054e-9287.56Eukaryotic translation initiation factor 6 (Fragme... [more]
IF6_CAEEL1.804e-8059.43Eukaryotic translation initiation factor 6 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_15G04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15G04-N7-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672226 ID=CX672226; Name=CX672226; organism=Citrus sinensis; type=EST; length=849bp
TTTTGGAAAATAACATACTATCATTAAGGGAAAACATCTTCAGAGTTGAC
AAACACCGCTTCAACTTCATGACAAAAAAGACTGTAAGCCAAAGTAACTT
AGACATAACTGTCAATTAAAGATTTCCTCATCTCGTCCACAAGGGCACTA
GGTTGAGCTTCCCTCAACTTGAAAACACTCTCAATAACAGAGAGTTCAGT
TGCTGTGGTGTCTGATCCACAGAATGCTGTCCAGTCATTCACAGTTAACC
CAGCAGCTATGACTTCGCTTCCACGGTTCACAGTCCCAGCCACCAAAGGT
ACTTGCAAGAGAGTTGAAAGTTCATCCAAGTCCTCAATGGATGTGTGAGG
GTGAACCAAGCCTCCTCTGTTGGAGAAGGAACAGTAACTGCCAACAAGGA
TATTACCAGCAATTGTCTGCCTAAAAACTTCTACTCCAAGAACATCTGCA
ATCATTTCCTCTGTTTCCCTGTCAAGATCTGTGTGTGTAAGAGCAACATG
GTCGTTGCATGCTATACAGTTGCCCAGGGCAGATAGCCTCTCTTCAATAC
GCTGAACGACAACTTGATCAGGTAGGCTGTTCCTCAAGTGTTGAAGTTCT
TGGTCTGTGGTAGTGTGCGGCAAGAGAAGCCCATTTTTGTTTCCAGCACA
AAGCCGGCCGATAATCCTAGTGCCACCAATAGATGTTTTAACAACAGGAA
AAACATCTGCTAACTCAGCCTCAAATGTGCTGTAGAAGCTTTCAGAACCT
CCTATTGCAACCAAGCAATAAGCATTAGTGAGCTTGGAAAACACACCAAC
CTCACATGAATTCTCAAACATAAGCCTGGTTGCCATGATTACAGATTGA
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