CX672181

Overview
NameCX672181
Unique NameCX672181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7554 contig Csv1_Contig7554:161..993. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672181 vs. ExPASy Swiss-Prot
Match: HTH_ARATH (Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 6.968e-69
Identity = 143/279 (51.25%), Postives = 176/279 (63.08%), Query Frame = 3
Query:    3 PADQLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSP--RDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXY-ESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPXATVMMLXRYMGVRIL 830
            P  +L+   I VVL+   VG+GM+DNPMN I VPS  P+E SLIQ VGIT+ G Y+EA++G    G SP      YG+ S K    S +P KQR PEA    I   K     AF G FILEK+  P+S GHL L   N +DNPSVTFNYFK P DLQRCV+                    +  +V  +++++  A +NL P+  N + S+ QFC+DTV+TIWHYHGGC VGKVV  + KVLGVD LRVIDGSTF  SPGTNP AT+MM+ RYMGV+IL
Sbjct:  309 PKKELQRLKIPVVLENEHVGKGMADNPMNTILVPSKAPIEQSLIQTVGITKMGVYVEASTG---FGQSPESIHTHYGIMSNKNELFSTIPAKQRRPEATQAYITRNKYQLHEAFNGSFILEKLAYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVTSNRFLNYTQCDKQNVHKMLSLSVKANINLRPKQLNDTKSMAQFCKDTVVTIWHYHGGCLVGKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMGRYMGVKIL 584          
BLAST of CX672181 vs. ExPASy Swiss-Prot
Match: MDL1_PRUSE ((R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.241e-33
Identity = 93/277 (33.57%), Postives = 130/277 (46.93%), Query Frame = 3
Query:    3 PADQLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTR-NPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPXATVMMLXRYMGVRIL 830
            P   L + NI VVL  P VGQ + DNP N I +  P P+E +++ V+GI+            +F   S S   +             PP    P           +   P         KV GP+S G L L++  N   +P+V FNY+  P DL  CV G                  E +      N+        LP+      + E FCR++V + WHYHGGC VGKV+D D++V G+DALRV+DGSTF Y+P ++P    +ML RY+G++IL
Sbjct:  300 PESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISN-----------DFYQCSFSSLPF-----------TTPPFSFFPST---------SYPLPNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNPTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGIEGFNILGIP----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGIDALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKIL 541          
BLAST of CX672181 vs. ExPASy Swiss-Prot
Match: MDL4_PRUSE ((R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.381e-31
Identity = 93/277 (33.57%), Postives = 135/277 (48.74%), Query Frame = 3
Query:    3 PADQLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTR-NPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPXATVMMLXRYMGVRIL 830
            P   L + NI+VV   P VGQ ++DNP N I +  P P+E S + V+GIT    + + +        S  P D   FS        + P    P            L +  F    I+ KV GP+S G L L++  N +  P+V FNY  +P DL  CV G                  + +      N+  +     LP +     + E+FCRDTV + WHYHGG  VGKV+D +++V G++ALRV+DGSTF  +P ++P    +ML RY+G +I+
Sbjct:  302 PESYLTSLNISVVASHPYVGQYVNDNPRNFINILPPNPIEPSTVTVLGITS--DFYQCSL-------SSLPFDTPPFS--------LFPTTSYP------------LPNQTF--AHIVSKVPGPLSAGSLTLQSSSNVSVAPNVKFNYCSDPVDLTHCVSGMKKIGVFLSTDALKPYKVDDLPGIDGFNILGTP----LPENQTDDAAFEKFCRDTVASYWHYHGGAIVGKVIDGNFRVTGINALRVVDGSTFPATPASHPQGFYLMLGRYVGTKIV 543          
BLAST of CX672181 vs. ExPASy Swiss-Prot
Match: MDL2_PRUSE ((R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.862e-30
Identity = 95/274 (34.67%), Postives = 131/274 (47.81%), Query Frame = 3
Query:   15 LKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELR-TRNPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNM-TASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPXATVMMLXRYMGVRIL 830
            L + NI+VV   P VGQ + DNP N I +  P P+E S + V+GIT    Y  + S   F     S   +G F           P    P            L +  F    I+ KV GP+S G + L+ T +    P+VTFNY+    DL  CV G                 Y+   +P +        P   LP +     + E FCR+ V + WHYHGGC VG+V+D D++V G++ALRV+DGSTF  +P ++P    +ML RYMG +IL
Sbjct:  306 LTSLNISVVASHPYVGQYIYDNPRNFINILPPNPIEASTVTVLGITS-DFYQCSISSLPF-----STAPFGFF-----------PNPTYP------------LPNTTF--AHIVNKVPGPLSHGTVLLQSTSDVRVAPNVTFNYYSNTTDLAHCVSG--MKKIGEFLSSDALKPYKVEDLPGIEGFDILGIP---LPENQTDDAAFETFCREAVASYWHYHGGCLVGEVLDDDFRVTGINALRVVDGSTFPSTPASHPQGFYLMLGRYMGTKIL 543          
BLAST of CX672181 vs. ExPASy Swiss-Prot
Match: MDL3_PRUSE ((R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.327e-30
Identity = 90/278 (32.37%), Postives = 125/278 (44.96%), Query Frame = 3
Query:    3 PADQLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLS-KVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNP-NDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPXATVMMLXRYMGVRIL 830
            P   L + NI+VV   P VGQ + DNP N I +  P P+E S + V+GIT                          +   I  L    PP    P            L +  F    I+ KV GP+S G + L + +     P+V FNY+    DL  CV G                  E +      N+        LP +     + E FCR++V + WHYHGGC VGKV+D  ++V G++ALRV+DGSTF  +P ++P    +ML RYMG++IL
Sbjct:  301 PESYLTSLNISVVASHPYVGQYIYDNPRNFINILPPNPIEASTVTVLGITS-----------------------DFYQCSISSLPFDTPPFSFFPTT-------SYPLPNQTF--AHIVNKVPGPLSHGTVTLNSSSDVRVGPNVKFNYYSNLTDLSHCVSGMKKLGEVLSTDALEPYKVEDLPGIDGFNILGIP----LPENQTDDAAFETFCRESVASYWHYHGGCLVGKVLDDGFRVTGINALRVVDGSTFPSTPASHPQGFYLMLGRYMGIQIL 542          
BLAST of CX672181 vs. ExPASy Swiss-Prot
Match: MDL1_PRUDU ((R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.275e-26
Identity = 88/278 (31.65%), Postives = 122/278 (43.88%), Query Frame = 3
Query:    3 PADQLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNP-NDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMT-ASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPXATVMMLXRYMGVRIL 830
            P   L + NITVV   P VGQ + +NP N I    P P+E S++ V+GI                       DY   S      S  PP    P           +   P      I+ +V GP+S G + L + +     P++ FNY+    DL  CV G                 Y++  V  +        P   LP +     S E FC D V + WHYHGG  VGKV+D  ++V+G+ ALRV+D STF Y P ++P    +ML RY+G++IL
Sbjct:  301 PESYLSSLNITVVQPNPYVGQFLYNNPRNFINNFPPNPIEASVVTVLGIRS---------------------DYYQVSLSSLPFS-TPPFSLFPTT---------SYPLPNSTFAHIVSQVPGPLSHGSVTLNSSSDVRIAPNIKFNYYSNSTDLANCVSG--MKKLGDLLRTKALEPYKARDVLGIDGFNYLGVP---LPENQTDDASFETFCLDNVASYWHYHGGSLVGKVLDDSFRVMGIKALRVVDASTFPYEPNSHPQGFYLMLGRYVGLQIL 542          
The following BLAST results are available for this feature:
BLAST of CX672181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
HTH_ARATH6.968e-6951.25Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=... [more]
MDL1_PRUSE1.241e-3333.57(R)-mandelonitrile lyase 1 OS=Prunus serotina GN=M... [more]
MDL4_PRUSE3.381e-3133.57(R)-mandelonitrile lyase 4 OS=Prunus serotina GN=M... [more]
MDL2_PRUSE2.862e-3034.67(R)-mandelonitrile lyase 2 OS=Prunus serotina GN=M... [more]
MDL3_PRUSE8.327e-3032.37(R)-mandelonitrile lyase 3 OS=Prunus serotina GN=M... [more]
MDL1_PRUDU3.275e-2631.65(R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_15E01_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15E01-J1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672181 ID=CX672181; Name=CX672181; organism=Citrus sinensis; type=EST; length=833bp
GCCCAGCAGACCAGCTCAAGGCCCATAACATCACGGTTGTGTTGGACCAG
CCCTTGGTTGGTCAGGGGATGTCTGATAATCCCATGAATGCCATTTTTGT
ACCGTCCCCTGTTCCGGTGGAGGTTTCCCTCATCCAGGTCGTCGGAATTA
CCCAGTTTGGAAGCTACATAGAAGCCGCAAGTGGCGAAAACTTCGCCGGT
GGGTCGCCATCGCCAAGAGACTATGGCATGTTCTCTCCCAAGATTGGACA
GCTGTCTAAAGTGCCTCCCAAACAAAGGACCCCAGAGGCTATAGCCGAAG
CAATTGAAAACATGAAAGCACTTGATGATCCAGCTTTCAGAGGCGGATTC
ATTCTCGAAAAGGTTATGGGCCCAGTATCCACGGGACATTTGGAGCTCCG
AACCCGAAACCCGAACGATAACCCGTCCGTCACGTTCAATTACTTCAAGG
AACCTGAAGACTTACAAAGATGTGTACAGGGCATTTCAACCATAGAGAAA
ATAATTGAATCAAAATCTTTTTCTAAGTTTAAATACGAGAGTATGTCAGT
GCCAATACTGGTAAACATGACTGCCAGTGCCCCGGTCAATTTGCTGCCCA
GACACAGCAATGCATCAACATCACTGGAACAATTTTGCAGGGACACAGTG
ATGACCATATGGCATTATCATGGAGGTTGCCAAGTTGGTAAGGTTGTTGA
TCATGATTATAAGGTTCTTGGGGTCGATGCATTGAGGGTCATCGACGGAT
CCACGTTTTATTACTCCCCGGGGACTAATCCGNCAGCAACGGTCATGATG
CTTGNAAGGTACATGGGAGTCAGGATTCTGAGT
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