CX672100

Overview
NameCX672100
Unique NameCX672100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX672100_ssr211 microsatellite CX672100_ssr211:211..226. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5138 contig Csv1_Contig5138:252..1136. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672100 vs. ExPASy Swiss-Prot
Match: RL25_EHRCJ (50S ribosomal protein L25 OS=Ehrlichia canis (strain Jake) GN=rplY PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.736e-12
Identity = 36/111 (32.43%), Postives = 62/111 (55.86%), Query Frame = -1
Query:  346 VHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISATKLE 678
            V +   T RI ++ F + D GTE+K++VP++F   + C G+K+GG L  +  +L   C    I   IE+D+S+L  G  + +SD+ + P   ++ K     +  IS+T +E
Sbjct:   82 VQKHPVTDRIQHVDFQFIDYGTEIKIEVPLIFTNEQKCIGVKRGGVLNILHRTLSIKCLPNAILQNIEIDLSDLTAGHSIHVSDLNLPPEINVVMKEHNPAIVTISSTSME 192          
BLAST of CX672100 vs. ExPASy Swiss-Prot
Match: RL25_EHRRW (50S ribosomal protein L25 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rplY PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.051e-12
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = -1
Query:  355 VHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISAT 678
            + +   T RI ++ F + D GTE+K++VP+VF   + C G+KKGG L  +  +L   C    I   IEVD++NL IG  + +SD+ +     ++ K     L  IS T
Sbjct:   82 IQKHPVTDRIQHVDFQFIDHGTEIKIEVPLVFVNEQRCVGVKKGGVLNILHRTLHIKCLPNAILQSIEVDLANLTIGHSIHVSDLNLPSEVTVVMKEHNPTLVTISGT 189          
BLAST of CX672100 vs. ExPASy Swiss-Prot
Match: RL25_EHRRG (50S ribosomal protein L25 OS=Ehrlichia ruminantium (strain Gardel) GN=rplY PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.051e-12
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = -1
Query:  355 VHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISAT 678
            + +   T RI ++ F + D GTE+K++VP+VF   + C G+KKGG L  +  +L   C    I   IEVD++NL IG  + +SD+ +     ++ K     L  IS T
Sbjct:   82 IQKHPVTDRIQHVDFQFIDHGTEIKIEVPLVFVNEQRCVGVKKGGVLNILHRTLHIKCLPNAILQSIEVDLANLTIGHSIHVSDLNLPSEVTVVMKEHNPTLVTISGT 189          
BLAST of CX672100 vs. ExPASy Swiss-Prot
Match: RL25_EHRCR (50S ribosomal protein L25 OS=Ehrlichia chaffeensis (strain Arkansas) GN=rplY PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.616e-12
Identity = 35/111 (31.53%), Postives = 60/111 (54.05%), Query Frame = -1
Query:  346 VHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISATKLE 678
            V +   T RI ++ F + D GTE+K++VP++F   + C G+K+GG L  +  +L   C  + I   IE+D+S L  G  + +SD+++ P   +  K     +  IS+   E
Sbjct:   82 VQKHPVTDRIQHVDFQFIDYGTEIKIEVPLIFTNEQKCIGIKRGGVLNILHRTLSIKCSPKAILQNIEIDLSGLTTGHSIHVSDLKLPPEVNVTMKEHNPAIVTISSASTE 192          
BLAST of CX672100 vs. ExPASy Swiss-Prot
Match: RL25_ANAMM (50S ribosomal protein L25 OS=Anaplasma marginale (strain St. Maries) GN=rplY PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.585e-11
Identity = 34/108 (31.48%), Postives = 60/108 (55.56%), Query Frame = -1
Query:  355 VHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISAT 678
            + +   +G + ++ F + D G E+KV+VP+VF   + C G+K GG L  +  SL   C  + I   +EVD+ +L IG  + +SD+ +  + ++  K E   +  +SAT
Sbjct:   82 IQKHPVSGAVSHVDFQFVDRGAEIKVEVPLVFLNEQKCAGVKLGGALNILHRSLLIRCAPDAIPQSLEVDLLDLAIGHSIHVSDLALPETMQVAMKEENPVIASVSAT 189          
BLAST of CX672100 vs. ExPASy Swiss-Prot
Match: RL25_ANAMF (50S ribosomal protein L25 OS=Anaplasma marginale (strain Florida) GN=rplY PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.294e-11
Identity = 34/108 (31.48%), Postives = 60/108 (55.56%), Query Frame = -1
Query:  355 VHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISAT 678
            + +   +G + ++ F + D G E+KV+VP+VF   + C G+K GG L  +  SL   C  + I   +EVD+ +L IG  + +SD+ +  + ++  K E   +  +SAT
Sbjct:   82 IQKHPVSGAVSHVDFQFVDRGAEIKVEVPLVFLNEQKCAGVKLGGALNILHRSLLIRCAPDAIPQSLEVDLLDLAIGHSIHVSDLALPETMQVAMKEENPVVASVSAT 189          
The following BLAST results are available for this feature:
BLAST of CX672100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RL25_EHRCJ1.736e-1232.4350S ribosomal protein L25 OS=Ehrlichia canis (stra... [more]
RL25_EHRRW5.051e-1235.1950S ribosomal protein L25 OS=Ehrlichia ruminantium... [more]
RL25_EHRRG5.051e-1235.1950S ribosomal protein L25 OS=Ehrlichia ruminantium... [more]
RL25_EHRCR8.616e-1231.5350S ribosomal protein L25 OS=Ehrlichia chaffeensis... [more]
RL25_ANAMM5.585e-1131.4850S ribosomal protein L25 OS=Anaplasma marginale (... [more]
RL25_ANAMF7.294e-1131.4850S ribosomal protein L25 OS=Anaplasma marginale (... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_15A02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15A02-B3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672100 ID=CX672100; Name=CX672100; organism=Citrus sinensis; type=EST; length=885bp
TTTTTTTTTTTTTACTAAAATGAATGATACAACCATTCACCTAGTTGTAT
AATAAAATTATCAAATATAACATGCAATGAAATCTATCCACGAATGCTAC
AGAACAACCGGTATTTTTTAATTTAAGCTCTGACCATTAATTGTCCCTTC
TTTTACACGGAAACCAAAGCACATCCTGAAGCCCGGTTAAAAGAACCGGC
TTATTCCATCTCTTTCTTTCTTTCTTTTTTTAACCCCCACCCCCATTTCT
TTTTTTCCGCTTCTTCTCTTAGGTATTCTACTCATAAATCTGCAAACCTT
GCCCAAGTTCCACTTCAGTGCCTACATCACTGCAGGTTCTGGGTTTTCCA
ACTTAGTTGCCGAGATCTTGCATAGAGGCATTTTCTCATTCTTGCTCAGA
AGCTTCCAGGATGGATGAACCTCAATGTCGCTCATGAATACTCTATCTCC
AATATCGAGATTGCTGACATCTACCTCAATTTTGGGAGAAATATGTTCAG
CTGGGCACAGATATTTTAAGCTGGTTCTAATACTTTTCAAATATCCCCCT
TTCTTGAGACCAGGACAGCTCTCTACTCCTTTAAAGACAACAGGCACATC
AACTTTCAACTCCGTTCCATCATCAGCCCAGACAAAAACCAAATTCAATA
TTCTCCCAGTCTCTTCATCTCTATGAACCTACCCACGAAAACAGAAAAAA
TTTCAAACACTATGTAAAAACCAAAATAAAATGAAGCAGACGGGTTTTAC
CTTAATGGGAAGCACTTTTCCTGAATCAAGCAAAACCGACGACCCAGAAC
CGGCACGGATCTGCAGCGGGAAAGTAGTGGAGCAAAAGAAGGGGAGTTCT
ACGGACTTGAGGATGGAGTNGATCTGCTTTCTTTC
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