CX672082

Overview
NameCX672082
Unique NameCX672082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX672082_ssr721 microsatellite CX672082_ssr721:721..732. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13133 contig Csv1_Contig13133:40..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX672082 vs. ExPASy Swiss-Prot
Match: HSP80_SOLLC (Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.402e-65
Identity = 134/196 (68.37%), Postives = 142/196 (72.45%), Query Frame = -3 
Query:  220 LKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADADMPPLEDAADDAEGSKMEEVD 807
            LKEFEGKKLVSAT                         LCKV+KDVLG              SPCCLVTGEYGWTANMERIMKAQALRD+SMAGYMSSKKTMEINPEN IM+ELRKRADADKNDKSVKD          LTSGFSL++PNTFGNRIHRMLKLGLSI+E++GDADADMP LED   DAEGSKMEEVD
Sbjct:  504 LKEFEGKKLVSATKEGLKLDESEDEKKKQEELKEKFEGLCKVMKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENSIMDELRKRADADKNDKSVKDLVLLLFETALLTSGFSLEEPNTFGNRIHRMLKLGLSIDEESGDADADMPALEDPEADAEGSKMEEVD 699
[Close]
BLAST of CX672082 vs. ExPASy Swiss-Prot
Match: HSP82_ARATH (Heat shock protein 81-2 OS=Arabidopsis thaliana GN=HSP81-2 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 9.265e-63
Identity = 135/197 (68.53%), Postives = 143/197 (72.59%), Query Frame = -3 
Query:  220 LKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSI-EEDAGDADADMPPLEDAADDAEGSKMEEVD 807
            LKEFEGKKLVSAT                         LCKVIKDVLG              SPCCLVTGEYGWTANMERIMKAQALRD+SMAGYMSSKKTMEINPEN IM+ELRKRADADKNDKSVKD          LTSGFSLD+PNTFG+RIHRMLKLGLSI ++DA +ADA+MPPLED A DAEGSKMEEVD
Sbjct:  504 LKEFEGKKLVSATKEGLKLDETEDEKKKKEELKEKFEGLCKVIKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENSIMDELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDEPNTFGSRIHRMLKLGLSIDDDDAVEADAEMPPLEDDA-DAEGSKMEEVD 699
[Close]
BLAST of CX672082 vs. ExPASy Swiss-Prot
Match: HSP83_ARATH (Heat shock protein 81-3 OS=Arabidopsis thaliana GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 2.696e-62
Identity = 134/197 (68.02%), Postives = 141/197 (71.57%), Query Frame = -3 
Query:  220 LKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSI-EEDAGDADADMPPLEDAADDAEGSKMEEVD 807
            LKEFEGKKLVSAT                         LCKVIKDVLG              SPCCLVTGEYGWTANMERIMKAQALRD+SM GYMSSKKTMEINPEN IM+ELRKRADADKNDKSVKD          LTSGFSLD+PNTFG+RIHRMLKLGLSI ++D  +ADADMPPLED A DAEGSKMEEVD
Sbjct:  504 LKEFEGKKLVSATKEGLKLDETEDEKKKKEELKEKFEGLCKVIKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMGGYMSSKKTMEINPENSIMDELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDEPNTFGSRIHRMLKLGLSIDDDDVVEADADMPPLEDDA-DAEGSKMEEVD 699
[Close]
BLAST of CX672082 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSJ (Heat shock protein 81-1 OS=Oryza sativa subsp. japonica GN=HSP81-1 PE=2 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 3.892e-61
Identity = 133/197 (67.51%), Postives = 138/197 (70.05%), Query Frame = -3 
Query:  220 LKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEED-AGDADADMPPLEDAADDAEGSKMEEVD 807
            LKEFEGKKLVSAT                         LCKVIK+VLG              SPCCLVTGEYGWTANMERIMKAQALRD+SMAGYMSSKKTMEINPEN IMEELRKRADADKNDKSVKD          LTSGFSLDDPNTFG+RIHRMLKLGLSI+ED   +AD DMPPLE   DDA  SKMEEVD
Sbjct:  506 LKEFEGKKLVSATKEGLKLDESEDEKKRKEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENAIMEELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLSIDEDETAEADTDMPPLE---DDAGESKMEEVD 699
[Close]
BLAST of CX672082 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSI (Heat shock protein 81-1 OS=Oryza sativa subsp. indica GN=HSP81-1 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.892e-61
Identity = 133/197 (67.51%), Postives = 138/197 (70.05%), Query Frame = -3 
Query:  220 LKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEED-AGDADADMPPLEDAADDAEGSKMEEVD 807
            LKEFEGKKLVSAT                         LCKVIK+VLG              SPCCLVTGEYGWTANMERIMKAQALRD+SMAGYMSSKKTMEINPEN IMEELRKRADADKNDKSVKD          LTSGFSLDDPNTFG+RIHRMLKLGLSI+ED   +AD DMPPLE   DDA  SKMEEVD
Sbjct:  506 LKEFEGKKLVSATKEGLKLDESEDEKKRKEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENAIMEELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLSIDEDETAEADTDMPPLE---DDAGESKMEEVD 699
[Close]
BLAST of CX672082 vs. ExPASy Swiss-Prot
Match: HSP83_ORYSJ (Heat shock protein 81-3 OS=Oryza sativa subsp. japonica GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 8.672e-61
Identity = 132/197 (67.01%), Postives = 139/197 (70.56%), Query Frame = -3 
Query:  220 LKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEED-AGDADADMPPLEDAADDAEGSKMEEVD 807
            LKEFEGKKLVSAT                         LCKVIK+VLG              SPCCLVTGEYGWTANMERIMKAQALRD+SMAGYMSSKKTMEINPEN IM+ELRKRADADKNDKSVKD          LTSGFSL+DPNTFG RIHRMLKLGLSI+ED + +ADADMPPLE   DDA  SKMEEVD
Sbjct:  506 LKEFEGKKLVSATKEGLKLDESEDEKKRQEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENAIMDELRKRADADKNDKSVKDLVMLLFETALLTSGFSLEDPNTFGTRIHRMLKLGLSIDEDESAEADADMPPLE---DDAGESKMEEVD 699
[Close]
BLAST of CX672082 vs. ExPASy Swiss-Prot
Match: HSP82_ORYSJ (Heat shock protein 81-2 OS=Oryza sativa subsp. japonica GN=HSP81-2 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 8.672e-61
Identity = 132/197 (67.01%), Postives = 139/197 (70.56%), Query Frame = -3 
Query:  220 LKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEED-AGDADADMPPLEDAADDAEGSKMEEVD 807
            LKEFEGKKLVSAT                         LCKVIK+VLG              SPCCLVTGEYGWTANMERIMKAQALRD+SMAGYMSSKKTMEINPEN IM+ELRKRADADKNDKSVKD          LTSGFSL+DPNTFG RIHRMLKLGLSI+ED + +ADADMPPLE   DDA  SKMEEVD
Sbjct:  506 LKEFEGKKLVSATKEGLKLDESEDEKKRQEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENSIMDELRKRADADKNDKSVKDLVMLLFETALLTSGFSLEDPNTFGTRIHRMLKLGLSIDEDESAEADADMPPLE---DDAGESKMEEVD 699
[Close]
BLAST of CX672082 vs. ExPASy Swiss-Prot
Match: HSP83_IPONI (Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.431e-56
Identity = 122/197 (61.93%), Postives = 133/197 (67.51%), Query Frame = -3 
Query:  220 LKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXL-CKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADADMPPLEDAADDAEGSKMEEVD 807
            LKE++GKKLVSAT                           CK+IKD+LG              SPCCLVTGEYGWTANMERIMKAQALRD+SM+ YMSSKKTMEINP+N IMEELRKRA+ADKNDKSVKD          LTSGFSLDDPNTFG RIHRMLKLGLSI+E+    DADMP LE+ A   E SKMEEVD
Sbjct:  509 LKEYDGKKLVSATKEGLKLEDDDEEEKKKREEKKKSFENLCKIIKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFGARIHRMLKLGLSIDEEEAGDDADMPALEEEA--GEESKMEEVD 703
[Close]
BLAST of CX672082 vs. ExPASy Swiss-Prot
Match: HSP82_MAIZE (Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.444e-55
Identity = 123/199 (61.81%), Postives = 135/199 (67.84%), Query Frame = -3 
Query:  220 LKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXL--CKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEED-AGDADADMPPLEDAADDAEGSKMEEVD 807
            LKE++GKKLVSAT                            CKVIKD+LG              SPCCLVTGEYGWTANMERIMKAQALRD+SM+ YMSSKKTMEINP+N IMEELRKRA+AD+NDKSVKD          LTSGFSLDDPNTF  RIHRMLKLGL+I+ED A D DADMP L++ A  AE SKMEEVD
Sbjct:  519 LKEYDGKKLVSATKEGLKLDDEDDEEAKKRREERKKRFEELCKVIKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSAYMSSKKTMEINPDNGIMEELRKRAEADRNDKSVKDLVLLLFETALLTSGFSLDDPNTFAARIHRMLKLGLNIDEDAAADEDADMPALDEGA--AEESKMEEVD 715
[Close]
BLAST of CX672082 vs. ExPASy Swiss-Prot
Match: HSP81_ARATH (Heat shock protein 81-1 OS=Arabidopsis thaliana GN=HSP81-1 PE=1 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 2.702e-54
Identity = 121/198 (61.11%), Postives = 133/198 (67.17%), Query Frame = -3 
Query:  220 LKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXL-CKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAG-DADADMPPLEDAADDAEGSKMEEVD 807
            LKE++GKKLVSAT                           CK IK++LG              SPCCLVTGEYGWTANMERIMKAQALRD+SM+GYMSSKKTMEINP+N IMEELRKRA+ADKNDKSVKD          LTSGFSLD+PNTF  RIHRMLKLGLSI+ED   + D DMP LE+  D AE SKMEEVD
Sbjct:  505 LKEYDGKKLVSATKEGLKLEDETEEEKKKREEKKKSFENLCKTIKEILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSGYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVMLLYETALLTSGFSLDEPNTFAARIHRMLKLGLSIDEDENVEEDGDMPELEE--DAAEESKMEEVD 700
The following BLAST results are available for this feature:
BLAST of CX672082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
HSP80_SOLLC3.402e-6568.37Heat shock cognate protein 80 OS=Solanum lycopersi... [more]
HSP82_ARATH9.265e-6368.53Heat shock protein 81-2 OS=Arabidopsis thaliana GN... [more]
HSP83_ARATH2.696e-6268.02Heat shock protein 81-3 OS=Arabidopsis thaliana GN... [more]
HSP81_ORYSJ3.892e-6167.51Heat shock protein 81-1 OS=Oryza sativa subsp. jap... [more]
HSP81_ORYSI3.892e-6167.51Heat shock protein 81-1 OS=Oryza sativa subsp. ind... [more]
HSP83_ORYSJ8.672e-6167.01Heat shock protein 81-3 OS=Oryza sativa subsp. jap... [more]
HSP82_ORYSJ8.672e-6167.01Heat shock protein 81-2 OS=Oryza sativa subsp. jap... [more]
HSP83_IPONI6.431e-5661.93Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=... [more]
HSP82_MAIZE2.444e-5561.81Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV... [more]
HSP81_ARATH2.702e-5461.11Heat shock protein 81-1 OS=Arabidopsis thaliana GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_14G12_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14G12-M24-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672082 ID=CX672082; Name=CX672082; organism=Citrus sinensis; type=EST; length=809bp
TTTAAGATAACTATATCAAATACCATAGATTCGGAAACAGCATACTTTTT
AAGCATTTGCAAAACAATAAAACAAAACCTCCACCAAAGAGGGAAAATAA
AAATATAAAAGCACTACTCCCACAGTACTACCACCACACAACGCATAACA
AAAAGAAACTACCTAGTTAAAAGAGTTTCATGAAAAAAGACTACTATAGC
AGACTATTATAGCTTCTTAATCAACTTCCTCCATCTTGCTGCCCTCAGCA
TCGTCAGCAGCATCCTCCAATGGTGGCATGTCAGCATCAGCATCACCAGC
ATCCTCCTCGATGCTCAGCCCGAGTTTCAACATCCTGTGGATTCTGTTGC
CGAAAGTGTTAGGGTCATCAAGGCTGAAACCAGAAGTGAGGAGAGCAGTC
TCAAAGAGCAGAAGGACAAGGTCCTTCACAGACTTGTCATTCTTGTCAGC
ATCAGCCCTCTTCCTGAGCTCCTCCATGATGGGGTTCTCCGGATTGATCT
CCATGGTCTTCTTGCTGGACATGTAACCAGCCATGCTGTTGTCTCTCAAG
GCCTGAGCCTTCATGATCCTCTCCATGTTGGCTGTCCATCCATACTCACC
AGTCACCAAACAGCAGGGTGAGTCAACAACACGGTCAGACACCACAACCT
TCTCGACCTTGTCACCCAAAACATCCTTGATCACCTTGCAGAGACCCTCA
AATTTCTCCTTCAAGGTTTCCTTCTTCTTCTTCTCATCTTCACTCTCGTC
AAGCTTGAGACCTTCTTTGGTGGCTGAGACAAGCTTCTTTCCCTCAAACT
CCTTGAGCT
back to top