CX672075

Overview
NameCX672075
Unique NameCX672075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX672075 vs. ExPASy Swiss-Prot
Match: JMJD5_MOUSE (JmjC domain-containing protein 5 OS=Mus musculus GN=Jmjd5 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.039e-16
Identity = 52/171 (30.41%), Postives = 76/171 (44.44%), Query Frame = 1 
Query:  196 WEQLHSGPWHSVLPVWRDAYSMACLHGA----KYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIETLSLKXXXXXXXXXXXXXXXXLVSE-EFNTAKALQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEL 693
            WE+L++GPW  V   WR  YS  CL  A    +   +     EALRV DMG+LMG  +L   L   +  L                      + + + + A  V+  R     +V +     L+ F   + + G PVI+     HWP    W+ L Y++ +AG RTVPVE+
Sbjct:   73 WEKLNTGPWRDVDKEWRRVYSFGCLLKALCLCQAPQKATTVVEALRVCDMGLLMGAAILEDILLKVVAVLQTHQLPGKQPARGPHQDQPATKKAKCDASPAPDVMLER-----MVPRLRCPPLQYFKQHFLVPGRPVILEGVADHWPCMKKWS-LQYIQEIAGCRTVPVEV 237

HSP 2 Score: 30.4166 bits (67), Expect = 3.039e-16
Identity = 15/42 (35.71%), Postives = 23/42 (54.76%), Query Frame = 2 
Query:  701 LQVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQH 826
            ++VG  Y  +DW Q L+   +F+++     S A    YLAQH
Sbjct:  235 VEVGSRYTDEDWSQTLMTVDEFIQKFIL--SEAKDVGYLAQH 274
The following BLAST results are available for this feature:
BLAST of CX672075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
JMJD5_MOUSE3.039e-1630.41JmjC domain-containing protein 5 OS=Mus musculus G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_14G07_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14G07-M14-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672075 ID=CX672075; Name=CX672075; organism=Citrus sinensis; type=EST; length=827bp
ATTTAGTCCAAAAATTTTCACGCGTACACGCGTCCACTCGACAAACTAAT
GGACGAGCTCTTGACGCCGATCATGGACGAGGAGTCGCCAAGGCTCCTGC
AGACCATTTCGGAGCACGGCGGATACGCCTACGTCGGCATGGCGGCTCAG
GCGGCGGCGGACATACGCGCGGCGGAGGCGGCGCGTGACTTGGCGTGGGA
GCAGCTGCATTCGGGGCCATGGCACTCGGTGTTACCGGTGTGGCGCGACG
CGTACTCGATGGCGTGCTTGCACGGGGCGAAGTACCATTATCGGAACGGC
GAGTTTAAGGAGGCGCTTAGGGTTTTGGATATGGGAGTGCTCATGGGCGG
GCCGGTTTTGCGAAAGGATTTGGATTCTGCTATCGAAACATTGTCGTTGA
AAGCTAGAGAAGGTGAAAATGAGCGTTTTGGTGAAAGAGAAGCTAATCGA
TTAGTCTCTGAGGAGTTTAATACAGCTAAGGCGCTTCAGGTTTTGCCAAA
TAGGTCTCTATCTTGTAAGCTTGTGGTGAAGAGGTCTGCTTTATCGCTGG
AGGGATTTTTAAGTGAATATTTCCTATCAGGTTCTCCGGTTATAATTACT
GATTGTATGGCACATTGGCCAGCTAGGACAAACTGGAATGACTTGGATTA
CCTTAAAAGAGTTGCTGGTGACCGCACAGTTCCAGTTGAGTTGAAATGCT
TTACAGGTTGGTAAAAACTATTTGTGCCAAGATTGGAAGCAAGAGCTGAT
CCCCTTCTCCCAATTTCTTGAAAGGATTCAATCGAATGGCAGTTCTGCTA
GTGTCCCTACTTATCTTGCTCAGCATC
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