CX672053

Overview
NameCX672053
Unique NameCX672053
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX672053_ssr1 microsatellite CX672053_ssr1:1..10. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7105 contig Csv1_Contig7105:61..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672053 vs. ExPASy Swiss-Prot
Match: Y2734_ARATH (Uncharacterized protein At2g17340 OS=Arabidopsis thaliana GN=At2g17340 PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 6.418e-84
Identity = 151/185 (81.62%), Postives = 169/185 (91.35%), Query Frame = 1
Query:  193 MESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLA 747
            MES+SE+VPFP LP PIE NYRACTIPYRFP+D+PKK T  EI+W+++F NSIPSFKKRAESD TVPDA  RAEKFA+RY+ ILED+KKDPE+HGGPPD ILLCRLREQVLRELGFRDIFKKVKDEENAKAISLF  VV L+D IED+GKR+E+L+RGIFAGNIFDLGSAQLAEVFS+DGMSFLA
Sbjct:    1 MESDSEMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAESDITVPDAPARAEKFAERYAGILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDGMSFLA 185          
BLAST of CX672053 vs. ExPASy Swiss-Prot
Match: PANK4_PONAB (Pantothenate kinase 4 OS=Pongo abelii GN=PANK4 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.001e-14
Identity = 50/136 (36.76%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  325 WLDLFLNSIPSFKKRA-ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKD 729
            WL  F  ++    KRA  S P   DA  RAEKF Q+Y   L+ +++ P  +G      LL   RE  L E  F D + KVK  EN  A+  F  VVR  D +  E +++ +L++G+ AGN+FD G+  +++V   D
Sbjct:  448 WLTCFEEALDGVVKRAVASQPDSVDAAERAEKFRQKYWNKLQTLRQQPFAYGTLTVRSLL-DTREHCLNEFNFPDPYSKVKQRENGVALRCFPGVVRSLDALGWEERQL-ALVKGLLAGNVFDWGAKAVSDVLESD 581          
BLAST of CX672053 vs. ExPASy Swiss-Prot
Match: PANK4_MACFA (Pantothenate kinase 4 OS=Macaca fascicularis GN=PANK4 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.001e-14
Identity = 50/136 (36.76%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  325 WLDLFLNSIPSFKKRA-ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKD 729
            WL  F  ++    KRA  S P   DA  RAEKF Q+Y   L+ +++ P  +G      LL   RE  L E  F D + KVK  EN  A+  F  VVR  D +  E +++ +L++G+ AGN+FD G+  +++V   D
Sbjct:  448 WLTCFEEALDGVVKRAVASQPDSVDAAERAEKFRQKYWNKLQTLRQQPFAYGTLTVRSLL-DTREHCLNEFNFPDPYSKVKQRENGVALRCFPGVVRSLDTLGWEERQL-ALVKGLLAGNVFDWGAKAVSDVLESD 581          
BLAST of CX672053 vs. ExPASy Swiss-Prot
Match: PANK4_HUMAN (Pantothenate kinase 4 OS=Homo sapiens GN=PANK4 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.560e-13
Identity = 50/136 (36.76%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  325 WLDLFLNSIPSFKKRA-ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKD 729
            WL  F  ++    KRA  S P   DA  RAEKF Q+Y   L+ +++ P  +G      LL   RE  L E  F D + KVK  EN  A+  F  VVR  D +  E +++ +L++G+ AGN+FD G+  ++ V   D
Sbjct:  448 WLTCFEEALDGVVKRAVASQPDSVDAAERAEKFRQKYWNKLQTLRQQPFAYGTLTVRSLL-DTREHCLNEFNFPDPYSKVKQRENGVALRCFPGVVRSLDALGWEERQL-ALVKGLLAGNVFDWGAKAVSAVLESD 581          
BLAST of CX672053 vs. ExPASy Swiss-Prot
Match: PANK4_RAT (Pantothenate kinase 4 OS=Rattus norvegicus GN=Pank4 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.538e-13
Identity = 49/136 (36.03%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  325 WLDLFLNSIPSFKKRA-ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKD 729
            WL  F  ++    KRA  S P   DA  RAEKF Q+Y   L+ ++  P  +G      LL   RE  L E  F D + KVK +EN  A+  F  V R  D +  E +++ +L++G+ AGN+FD G+  +++V   D
Sbjct:  448 WLTCFEEALDGVVKRAVASQPESVDAAERAEKFRQKYWGKLQTLRHQPFAYGTLTVRSLL-DTREHCLNEFNFPDPYSKVKQKENGLALKCFQSVTRSLDSLGWEERQL-ALVKGLLAGNVFDWGAKAVSDVLESD 581          
BLAST of CX672053 vs. ExPASy Swiss-Prot
Match: PANK4_MOUSE (Pantothenate kinase 4 OS=Mus musculus GN=Pank4 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.927e-13
Identity = 49/136 (36.03%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  325 WLDLFLNSIPSFKKRA-ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKD 729
            WL  F  ++    KRA  S P   DA  RAEKF Q+Y   L+ ++  P  +G      LL   RE  L E  F D + KVK +EN  A+  F  V R  D +  E +++ +L++G+ AGN+FD G+  +++V   D
Sbjct:  448 WLTCFEEALDGVVKRAVASQPESMDAVERAEKFRQKYWGKLQTLRHQPFAYGTLTVRSLL-DTREHCLNEFNFPDPYSKVKQKENGLALKCFQSVTRSLDSLGWEERQL-ALVKGLLAGNVFDWGAKAVSDVLESD 581          
The following BLAST results are available for this feature:
BLAST of CX672053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
Y2734_ARATH6.418e-8481.62Uncharacterized protein At2g17340 OS=Arabidopsis t... [more]
PANK4_PONAB7.001e-1436.76Pantothenate kinase 4 OS=Pongo abelii GN=PANK4 PE=... [more]
PANK4_MACFA7.001e-1436.76Pantothenate kinase 4 OS=Macaca fascicularis GN=PA... [more]
PANK4_HUMAN1.560e-1336.76Pantothenate kinase 4 OS=Homo sapiens GN=PANK4 PE=... [more]
PANK4_RAT4.538e-1336.03Pantothenate kinase 4 OS=Rattus norvegicus GN=Pank... [more]
PANK4_MOUSE5.927e-1336.03Pantothenate kinase 4 OS=Mus musculus GN=Pank4 PE=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_14F08_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14F08-K16-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672053 ID=CX672053; Name=CX672053; organism=Citrus sinensis; type=EST; length=747bp
GAGAGAGAGAGGGAGGATTTGGGCGGTCGCAGACGCAGAGCACGGCCCCC
AAGACAACGGAATCCATTCTCAGCAGACCAACTTGAGAGGATAGCTGTTG
CCTTGCCATTCTCTCCCTTTTTCTATACATATAATAAGTCAGCTGCTTCG
CATTTTGTTTCTTCATTCTTCATTTCATTCATTCCGCAAGAAATGGAGAG
TGAATCGGAGCTTGTTCCATTCCCACTGCTTCCGACTCCGATCGAAACAA
ACTACAGGGCATGCACAATTCCGTACAGATTCCCAACTGACAATCCCAAA
AAGCCTACTCGTACTGAGATTGCTTGGCTCGACCTCTTCCTCAATTCTAT
TCCTTCTTTCAAGAAGCGAGCTGAGAGTGATCCCACTGTGCCTGATGCTC
ACGTCAGAGCTGAGAAATTTGCTCAAAGGTATTCAGAGATACTTGAGGAC
ATGAAGAAAGATCCAGAAACTCATGGTGGACCACCTGATTGCATTCTTCT
TTGCCGACTTCGTGAGCAAGTCCTTAGAGAATTGGGCTTCAGAGATATAT
TCAAGAAAGTCAAGGATGAAGAGAATGCAAAGGCTATATCCTTATTTGGG
GATGTGGTTCGTCTTAACGATGTTATCGAAGATGAAGGCAAGCGCGTAGA
GAGCCTGATCAGAGGAATATTTGCTGGAAACATATTTGATCTTGGTTCAG
CACAGCTTGCTGAGGTCTTCTCAAAGGACGGTATGTCCTTTTTGGCT
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