CX672040

Overview
NameCX672040
Unique NameCX672040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX672040_ssr122 microsatellite CX672040_ssr122:122..133. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX672040 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 431.409 bits (1108), Expect = 3.426e-120
Identity = 207/227 (91.19%), Postives = 216/227 (95.15%), Query Frame = 3
Query:  222 FAEFSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDYCSSEGRPLYHDLNAYRVLFDENGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIFSFGTVLLDLLSGKHIPPSHALDMIRGK 902
            F+EFS ADL+AATNNFSSD IVSESGEKAPN+VYKGRLQ    NRRWIAVKKFTK AWP+PKQFA+EAWGVGKLRH RLANLIGYCCDGDERLLVAE+MPNDTLAKHLFHWENQTIEWAMRLRV  YIAEALDYCS+EGRPLYHDLNAYRVLFDE+GDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESV +SFGTVLLDLLSGKHIPPSHALDMIRGK
Sbjct:   58 FSEFSFADLKAATNNFSSDNIVSESGEKAPNLVYKGRLQ----NRRWIAVKKFTKMAWPEPKQFAEEAWGVGKLRHNRLANLIGYCCDGDERLLVAEFMPNDTLAKHLFHWENQTIEWAMRLRVGYYIAEALDYCSTEGRPLYHDLNAYRVLFDEDGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVTYSFGTVLLDLLSGKHIPPSHALDMIRGK 280          
BLAST of CX672040 vs. ExPASy Swiss-Prot
Match: Y5126_ARATH (Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 7.954e-93
Identity = 160/227 (70.48%), Postives = 200/227 (88.11%), Query Frame = 3
Query:  222 FAEFSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDYCSSEGRPLYHDLNAYRVLFDENGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIFSFGTVLLDLLSGKHIPPSHALDMIRGK 902
            F EFS+  +R AT+ F+++ IVSE GE+APNVVYKG+L+    N+R IAVK+F + +WPD +QF +EA  VG+LR+ R+ANL+G C + +ERLL+AE+MPN+TLAKHLFHWE+Q ++WAMRLRVAL+IA+AL+YC+S+GR LYHDLNAYRVLFD++ +PRLSCFGLMKNSRDGKSYSTNLA+TPPEYLR GRVTPESVI+SFGT+LLDLLSGKHIPPSHALD+IR +
Sbjct:   41 FREFSIETIRNATSGFAAENIVSEHGERAPNVVYKGKLE----NQRRIAVKRFNRKSWPDSRQFLEEAKAVGQLRNHRMANLLGCCYEDEERLLIAEFMPNETLAKHLFHWESQPMKWAMRLRVALHIAQALEYCTSKGRALYHDLNAYRVLFDDDANPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDR 263          
BLAST of CX672040 vs. ExPASy Swiss-Prot
Match: SSP_ARATH (Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.259e-62
Identity = 123/228 (53.95%), Postives = 163/228 (71.49%), Query Frame = 3
Query:  228 EFSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDYCSSEGRPLYHDLNAYRVLFDENGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIFSFGTVLLDLLSGKHIPPSHALDMIRGKIFF 911
            +FS + L+ ATN+FS + IVS+   +  +VV+KGRLQ+G     ++A+K+F   AW DPK F +EA  VGKLRHKRL NLIGYCCDGD+R LVA++M NDTLAK LF  + QT++W++RLRVA ++AEALDYC++ G   Y++L+AY+VLFDE+GD  LSCFGLMK   +             + +  G V PE+VI+ FGTVL++LLSGK IPPSHA +MI  K  F
Sbjct:   37 KFSFSALKTATNHFSPENIVSD---QTSDVVFKGRLQNGG----FVAIKRFNNMAWSDPKLFLEEAQRVGKLRHKRLVNLIGYCCDGDKRFLVADFMANDTLAKRLFQRKYQTMDWSIRLRVAYFVAEALDYCNTAGFASYNNLSAYKVLFDEDGDACLSCFGLMKEINN-------------DQITTGSVNPENVIYRFGTVLVNLLSGKQIPPSHAPEMIHRKNVF 244          
BLAST of CX672040 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.629e-31
Identity = 83/221 (37.56%), Postives = 125/221 (56.56%), Query Frame = 3
Query:  234 SLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKH--AWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIE---WAMRLRVALYIAEALDYCSSEGRP--LYHDLNAYRVLFDENGDPRLSCFGLMKNSRDGK-SYSTNLA----YTPPEYLRNGRVTPESVIFSFGTVLLDLLSGK 860
            S+  LR+ TNNFSSD I+   G     VVYKG L DG      IAVK+      A     +F  E   + K+RH+ L  L+GYC DG+E+LLV EYMP  TL++HLF W  + ++   W  RL +AL +A  ++Y         ++ DL    +L  ++   +++ FGL++ + +GK S  T +A    Y  PEY   GRVT +  ++SFG +L++L++G+
Sbjct:  577 SIQVLRSVTNNFSSDNILGSGGF---GVVYKGELHDGTK----IAVKRMENGVIAGKGFAEFKSEIAVLTKVRHRHLVTLLGYCLDGNEKLLVYEYMPQGTLSRHLFEWSEEGLKPLLWKQRLTLALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMELITGR 790          
BLAST of CX672040 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.290e-30
Identity = 86/225 (38.22%), Postives = 124/225 (55.11%), Query Frame = 3
Query:  231 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGN------DNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFH--WENQTIEWAMRLRVALYIAEALDYC-SSEGRPLYHDLNAYRVLFDENGDPRLSCFGLMKNSRDG-KSY-STNL----AYTPPEYLRNGRVTPESVIFSFGTVLLDLLSGK 860
            FS A+L++AT NF  D ++ E G      V+KG + + +           IAVKK  +  W   +++  E   +G+  H+ L  LIGYC + + RLLV E+MP  +L  HLF      Q + W +RL+VAL  A+ L +  SSE R +Y D     +L D   + +LS FGL K+   G KS+ ST +     Y  PEYL  G +T +S ++SFG VLL+LLSG+
Sbjct:   56 FSFAELKSATRNFRPDSVLGEGGF---GCVFKGWIDEKSLTASRPGTGLVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHRHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGLYFQPLSWKLRLKVALGAAKGLAFLHSSETRVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPIGDKSHVSTRVMGTHGYAAPEYLATGHLTTKSDVYSFGVVLLELLSGR 277          
BLAST of CX672040 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.633e-29
Identity = 81/220 (36.82%), Postives = 122/220 (55.45%), Query Frame = 3
Query:  231 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHW--ENQTIEWAMRLRVALYIAEALDYCSSEGRP--LYHDLNAYRVLFDENGDPRLSCFGLMKNSRDG-KSY-STNL----AYTPPEYLRNGRVTPESVIFSFGTVLLDLLSGK 860
            F+  +L AAT NF  D  + E G      VYKGRL   +   + +AVK+  ++     ++F  E   +  L H  L NLIGYC DGD+RLLV E+MP  +L  HL     + + ++W MR+++A   A+ L++   +  P  +Y D  +  +L DE   P+LS FGL K    G KS+ ST +     Y  PEY   G++T +S ++SFG V L+L++G+
Sbjct:   74 FAFRELAAATMNFHPDTFLGEGGFGR---VYKGRL---DSTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEALDWNMRMKIAAGAAKGLEFLHDKANPPVIYRDFKSSNILLDEGFHPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGR 287          
BLAST of CX672040 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.058e-28
Identity = 80/224 (35.71%), Postives = 121/224 (54.02%), Query Frame = 3
Query:  231 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGND-------NRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDYC-SSEGRPLYHDLNAYRVLFDENGDPRLSCFGLMKNSRDGKS--YSTNL----AYTPPEYLRNGRVTPESVIFSFGTVLLDLLSGK 860
            F+  +L+ AT NF  D ++ E G      V+KG + DG         +   +AVKK     +   K++  E   +G+L H  L  L+GYC +G+ RLLV E+MP  +L  HLF    Q + WA+R++VA+  A+ L +   ++ + +Y D  A  +L D   + +LS FGL K    G     ST +     Y  PEY+  GR+T +S ++SFG VLL+LLSG+
Sbjct:   71 FTFNELKNATRNFRPDSLLGEGGF---GYVFKGWI-DGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLGQLSHPNLVKLVGYCVEGENRLLVYEFMPKGSLENHLFRRGAQPLTWAIRMKVAIGAAKGLTFLHDAKSQVIYRDFKAANILLDAEFNSKLSDFGLAKAGPTGDKTHVSTQVMGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGR 290          
BLAST of CX672040 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 2.358e-28
Identity = 81/225 (36.00%), Postives = 123/225 (54.67%), Query Frame = 3
Query:  231 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRW------IAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWEN--QTIEWAMRLRVALYIAEALDYC-SSEGRPLYHDLNAYRVLFDENGDPRLSCFGLMKNSRDG-KSY-STNL----AYTPPEYLRNGRVTPESVIFSFGTVLLDLLSGK 860
            F+ A+L+AAT NF  D ++ E G  +   V+KG + +             IAVKK  +  W   +++  E   +G+  H  L  LIGYC + + RLLV E+MP  +L  HLF   +  Q + W +RL+VAL  A+ L +  ++E   +Y D     +L D   + +LS FGL K+   G KS+ ST +     Y  PEYL  G +T +S ++S+G VLL++LSG+
Sbjct:   57 FTFAELKAATRNFRPDSVLGEGGFGS---VFKGWIDEQTLTASKPGTGVVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHPNLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWTLRLKVALGAAKGLAFLHNAETSVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPTGDKSHVSTRIMGTYGYAAPEYLATGHLTTKSDVYSYGVVLLEVLSGR 278          
BLAST of CX672040 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.959e-28
Identity = 76/223 (34.08%), Postives = 122/223 (54.71%), Query Frame = 3
Query:  231 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGN------DNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDYC-SSEGRPLYHDLNAYRVLFDENGDPRLSCFGLMK--NSRDGKSYSTNL----AYTPPEYLRNGRVTPESVIFSFGTVLLDLLSGK 860
            F+  +L+ AT NF  D ++ E G      V+KG +   +       +   +AVK+     +   K++  E   +G+L H  L  L+GYC +G+ RLLV E+MP  +L  HLF    Q + WA+R++VA+  A+ L +   ++ + +Y D  A  +L D + + +LS FGL K   + D    ST +     Y  PEY+  GR+T +S ++SFG VLL+L+SG+
Sbjct:   74 FTFNELKNATKNFRQDNLLGEGGF---GCVFKGWIDQTSLTASRPGSGIVVAVKQLKPEGFQGHKEWLTEVNYLGQLSHPNLVLLVGYCAEGENRLLVYEFMPKGSLENHLFRRGAQPLTWAIRMKVAVGAAKGLTFLHEAKSQVIYRDFKAANILLDADFNAKLSDFGLAKAGPTGDNTHVSTKVIGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELISGR 293          
BLAST of CX672040 vs. ExPASy Swiss-Prot
Match: Y5707_ARATH (Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.996e-27
Identity = 77/223 (34.53%), Postives = 115/223 (51.57%), Query Frame = 3
Query:  231 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQ---DGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCD----GDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDYCSSEGRPLYHDLNAYRVLFDENGDPRLSCFGLMKNSRDGKSYSTNLA------YTPPEYLRNGRVTPESVIFSFGTVLLDLLSGK 860
            FS  +L  AT  FS   ++ E G     +VYKG++    D +D    +A+KK  +      KQ+  E   +G + H  +  LIGYC +    G ERLLV EYM N +L  HLF   + T+ W  RL + L  AE L Y   + + +Y D  +  VL D+   P+LS FGL +   DG +     A      Y  PEY++ G +  +S ++SFG VL ++++G+
Sbjct:   74 FSYEELSKATYVFSRKLVIGEGGF---GIVYKGKILSNGDSSDPPLVVAIKKLNRQGLQGHKQWLAEVQFLGVVNHPNVVKLIGYCSEDGETGIERLLVYEYMSNRSLEDHLFPRRSHTLPWKKRLEIMLGAAEGLTYL-HDLKVIYRDFKSSNVLLDDQFCPKLSDFGLAREGPDGDNTHVTTARVGTHGYAAPEYVQTGHLRLKSDVYSFGVVLYEIITGR 292          
The following BLAST results are available for this feature:
BLAST of CX672040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
Y4523_ARATH3.426e-12091.19Probable serine/threonine-protein kinase At4g35230... [more]
Y5126_ARATH7.954e-9370.48Probable serine/threonine-protein kinase At5g41260... [more]
SSP_ARATH3.259e-6253.95Probable inactive receptor-like kinase SSP OS=Arab... [more]
TMK1_ARATH6.629e-3137.56Probable receptor protein kinase TMK1 OS=Arabidops... [more]
APK1A_ARATH3.290e-3038.22Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
PBS1_ARATH1.633e-2936.82Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
APK2B_ARATH1.058e-2835.71Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
APK1B_ARATH2.358e-2836.00Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
APK2A_ARATH8.959e-2834.08Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
Y5707_ARATH1.996e-2734.53Probable receptor-like protein kinase At5g47070 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14F02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14F02-K4-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672040 ID=CX672040; Name=CX672040; organism=Citrus sinensis; type=EST; length=912bp
CTTCAGCTGCTGAGCTGGGGGGTTTGGTTGGTTCATTTCTTCTGAGTCAA
CTCGGCCGAGTTATGGGCTGTTGCGAATCAACCTTCTTAAAAGGACACCT
CTCGGTTGATACCAAAAATCGCCACCACCACCAACAGAATCACCGCAATC
ATCCGACTCAGCCGTCTAATGGTACTGAGGGCTCAGGCGGACTCGCTGCC
GGCTCAGATGGCGCGCCGGCTTTCGCCGAGTTCTCCTTAGCCGACCTCAG
AGCCGCTACGAATAACTTCAGTTCTGATTTTATCGTATCCGAGAGCGGCG
AAAAGGCTCCCAATGTCGTCTATAAAGGCCGCCTTCAAGACGGAAATGAT
AACCGCCGTTGGATCGCCGTTAAAAAATTCACCAAACATGCCTGGCCCGA
TCCCAAACAGTTTGCTGATGAGGCTTGGGGTGTTGGGAAGCTGAGGCATA
AGAGGCTGGCGAATTTGATTGGCTATTGTTGTGATGGTGATGAGAGATTG
CTGGTGGCTGAGTACATGCCAAATGATACTCTTGCTAAACATTTATTTCA
CTGGGAGAATCAAACCATTGAGTGGGCTATGCGTCTAAGAGTTGCTCTGT
ATATTGCTGAAGCTTTAGATTATTGCAGTAGTGAAGGACGTCCATTATAC
CATGATTTGAATGCTTATAGGGTTCTCTTTGATGAGAATGGTGATCCTCG
GCTTTCATGTTTTGGCTTGATGAAAAATAGTAGGGATGGAAAAAGTTACA
GCACAAATCTTGCCTATACTCCTCCAGAGTACCTAAGAAATGGAAGGGTC
ACTCCAGAAAGTGTTATTTTCAGCTTCGGGACTGTCCTTTTGGATCTTCT
CAGTGGAAAGCATATTCCCCCTAGTCATGCACTTGATATGATTCGGGGAA
AGATATTCTTCA
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